data_5A14 # _model_server_result.job_id kCBBfwkgIHHY9hpPhFvqMw _model_server_result.datetime_utc '2025-03-04 16:08:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1297}' # _entry.id 5A14 # _exptl.entry_id 5A14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.504 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(2-azanylpyrimidin-4-yl)oxyphenyl]-3-[4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A14 _cell.length_a 64.41 _cell.length_b 67.27 _cell.length_c 89.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id MET _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MET _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.331 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H26 F3 N7 O2' _chem_comp.formula_weight 501.504 _chem_comp.id LQ5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(2-azanylpyrimidin-4-yl)oxyphenyl]-3-[4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C03 LQ5 sing 200 n y C02 C07 LQ5 doub 201 n y C03 C04 LQ5 doub 202 n y C04 C26 LQ5 sing 203 n y C04 N20 LQ5 sing 204 n n C06 C07 LQ5 sing 205 n y C06 C26 LQ5 doub 206 n y C07 O08 LQ5 sing 207 n n O08 C09 LQ5 sing 208 n n C09 C10 LQ5 doub 209 n y C09 N30 LQ5 sing 210 n y C10 C11 LQ5 sing 211 n y C11 N12 LQ5 doub 212 n y N12 C13 LQ5 sing 213 n y C13 N17 LQ5 sing 214 n n C13 N30 LQ5 doub 215 n y C18 N19 LQ5 sing 216 n n C18 O39 LQ5 doub 217 n n C18 N20 LQ5 sing 218 n n N19 C20 LQ5 sing 219 n n C20 C21 LQ5 sing 220 n y C20 C29 LQ5 doub 221 n y C21 C22 LQ5 doub 222 n y C22 C23 LQ5 sing 223 n y C23 C24 LQ5 doub 224 n y C23 C30 LQ5 sing 225 n n C24 C25 LQ5 sing 226 n n C24 C29 LQ5 sing 227 n y C25 F26 LQ5 sing 228 n n C25 F27 LQ5 sing 229 n n C25 F28 LQ5 sing 230 n n C30 N31 LQ5 sing 231 n n N31 C32 LQ5 sing 232 n n N31 C36 LQ5 sing 233 n n C32 C33 LQ5 sing 234 n n C33 N34 LQ5 sing 235 n n N34 C35 LQ5 sing 236 n n N34 C37 LQ5 sing 237 n n C35 C36 LQ5 sing 238 n n C02 H02 LQ5 sing 239 n n C03 H03 LQ5 sing 240 n n C26 H26 LQ5 sing 241 n n N20 H20 LQ5 sing 242 n n C06 H06 LQ5 sing 243 n n C10 H10 LQ5 sing 244 n n C11 H11 LQ5 sing 245 n n N17 H171 LQ5 sing 246 n n N17 H172 LQ5 sing 247 n n N19 H19 LQ5 sing 248 n n C21 H21 LQ5 sing 249 n n C29 H29 LQ5 sing 250 n n C22 H22 LQ5 sing 251 n n C30 H301 LQ5 sing 252 n n C30 H302 LQ5 sing 253 n n C32 H321 LQ5 sing 254 n n C32 H322 LQ5 sing 255 n n C36 H361 LQ5 sing 256 n n C36 H362 LQ5 sing 257 n n C33 H331 LQ5 sing 258 n n C33 H332 LQ5 sing 259 n n C35 H351 LQ5 sing 260 n n C35 H352 LQ5 sing 261 n n C37 H371 LQ5 sing 262 n n C37 H372 LQ5 sing 263 n n C37 H373 LQ5 sing 264 n n # _atom_sites.entry_id 5A14 _atom_sites.fract_transf_matrix[1][1] 0.015526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LQ5 A 1 1297 1297 LQ5 LQ5 . C 2 LQ5 A 1 1298 1298 LQ5 LQ5 . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . D 3 HOH A 44 2044 2044 HOH HOH . D 3 HOH A 45 2045 2045 HOH HOH . D 3 HOH A 46 2046 2046 HOH HOH . D 3 HOH A 47 2047 2047 HOH HOH . D 3 HOH A 48 2048 2048 HOH HOH . D 3 HOH A 49 2049 2049 HOH HOH . D 3 HOH A 50 2050 2050 HOH HOH . D 3 HOH A 51 2051 2051 HOH HOH . D 3 HOH A 52 2052 2052 HOH HOH . D 3 HOH A 53 2053 2053 HOH HOH . D 3 HOH A 54 2054 2054 HOH HOH . D 3 HOH A 55 2055 2055 HOH HOH . D 3 HOH A 56 2056 2056 HOH HOH . D 3 HOH A 57 2057 2057 HOH HOH . D 3 HOH A 58 2058 2058 HOH HOH . D 3 HOH A 59 2059 2059 HOH HOH . D 3 HOH A 60 2060 2060 HOH HOH . D 3 HOH A 61 2061 2061 HOH HOH . D 3 HOH A 62 2062 2062 HOH HOH . D 3 HOH A 63 2063 2063 HOH HOH . D 3 HOH A 64 2064 2064 HOH HOH . D 3 HOH A 65 2065 2065 HOH HOH . D 3 HOH A 66 2066 2066 HOH HOH . D 3 HOH A 67 2067 2067 HOH HOH . D 3 HOH A 68 2068 2068 HOH HOH . D 3 HOH A 69 2069 2069 HOH HOH . D 3 HOH A 70 2070 2070 HOH HOH . D 3 HOH A 71 2071 2071 HOH HOH . D 3 HOH A 72 2072 2072 HOH HOH . D 3 HOH A 73 2073 2073 HOH HOH . D 3 HOH A 74 2074 2074 HOH HOH . D 3 HOH A 75 2075 2075 HOH HOH . D 3 HOH A 76 2076 2076 HOH HOH . D 3 HOH A 77 2077 2077 HOH HOH . D 3 HOH A 78 2078 2078 HOH HOH . D 3 HOH A 79 2079 2079 HOH HOH . D 3 HOH A 80 2080 2080 HOH HOH . D 3 HOH A 81 2081 2081 HOH HOH . D 3 HOH A 82 2082 2082 HOH HOH . D 3 HOH A 83 2083 2083 HOH HOH . D 3 HOH A 84 2084 2084 HOH HOH . D 3 HOH A 85 2085 2085 HOH HOH . D 3 HOH A 86 2086 2086 HOH HOH . D 3 HOH A 87 2087 2087 HOH HOH . D 3 HOH A 88 2088 2088 HOH HOH . D 3 HOH A 89 2089 2089 HOH HOH . D 3 HOH A 90 2090 2090 HOH HOH . D 3 HOH A 91 2091 2091 HOH HOH . D 3 HOH A 92 2092 2092 HOH HOH . D 3 HOH A 93 2093 2093 HOH HOH . D 3 HOH A 94 2094 2094 HOH HOH . D 3 HOH A 95 2095 2095 HOH HOH . D 3 HOH A 96 2096 2096 HOH HOH . D 3 HOH A 97 2097 2097 HOH HOH . D 3 HOH A 98 2098 2098 HOH HOH . D 3 HOH A 99 2099 2099 HOH HOH . D 3 HOH A 100 2100 2100 HOH HOH . D 3 HOH A 101 2101 2101 HOH HOH . D 3 HOH A 102 2102 2102 HOH HOH . D 3 HOH A 103 2103 2103 HOH HOH . D 3 HOH A 104 2104 2104 HOH HOH . D 3 HOH A 105 2105 2105 HOH HOH . D 3 HOH A 106 2106 2106 HOH HOH . D 3 HOH A 107 2107 2107 HOH HOH . D 3 HOH A 108 2108 2108 HOH HOH . D 3 HOH A 109 2109 2109 HOH HOH . D 3 HOH A 110 2110 2110 HOH HOH . D 3 HOH A 111 2111 2111 HOH HOH . D 3 HOH A 112 2112 2112 HOH HOH . D 3 HOH A 113 2113 2113 HOH HOH . D 3 HOH A 114 2114 2114 HOH HOH . D 3 HOH A 115 2115 2115 HOH HOH . D 3 HOH A 116 2116 2116 HOH HOH . D 3 HOH A 117 2117 2117 HOH HOH . D 3 HOH A 118 2118 2118 HOH HOH . D 3 HOH A 119 2119 2119 HOH HOH . D 3 HOH A 120 2120 2120 HOH HOH . D 3 HOH A 121 2121 2121 HOH HOH . D 3 HOH A 122 2122 2122 HOH HOH . D 3 HOH A 123 2123 2123 HOH HOH . D 3 HOH A 124 2124 2124 HOH HOH . D 3 HOH A 125 2125 2125 HOH HOH . D 3 HOH A 126 2126 2126 HOH HOH . D 3 HOH A 127 2127 2127 HOH HOH . D 3 HOH A 128 2128 2128 HOH HOH . D 3 HOH A 129 2129 2129 HOH HOH . D 3 HOH A 130 2130 2130 HOH HOH . D 3 HOH A 131 2131 2131 HOH HOH . D 3 HOH A 132 2132 2132 HOH HOH . D 3 HOH A 133 2133 2133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 LQ5 . . . B 2 30.151 6.671 5.84 1 31.68 ? C02 LQ5 1297 A 1 HETATM 2 C C03 LQ5 . . . B 2 30.733 5.991 6.9 1 31.56 ? C03 LQ5 1297 A 1 HETATM 3 C C04 LQ5 . . . B 2 30.088 5.912 8.15 1 31.64 ? C04 LQ5 1297 A 1 HETATM 4 C C06 LQ5 . . . B 2 28.264 7.234 7.292 1 37.19 ? C06 LQ5 1297 A 1 HETATM 5 C C07 LQ5 . . . B 2 28.925 7.294 6.053 1 34.16 ? C07 LQ5 1297 A 1 HETATM 6 O O08 LQ5 . . . B 2 28.348 7.994 5.004 1 33.88 ? O08 LQ5 1297 A 1 HETATM 7 C C09 LQ5 . . . B 2 27.216 7.473 4.394 1 30.2 ? C09 LQ5 1297 A 1 HETATM 8 C C10 LQ5 . . . B 2 26.881 6.102 4.406 1 29.03 ? C10 LQ5 1297 A 1 HETATM 9 C C11 LQ5 . . . B 2 25.718 5.707 3.728 1 29.35 ? C11 LQ5 1297 A 1 HETATM 10 N N12 LQ5 . . . B 2 24.979 6.669 3.101 1 29.47 ? N12 LQ5 1297 A 1 HETATM 11 C C13 LQ5 . . . B 2 25.333 7.974 3.11 1 30.68 ? C13 LQ5 1297 A 1 HETATM 12 N N17 LQ5 . . . B 2 24.595 8.918 2.504 1 31.09 ? N17 LQ5 1297 A 1 HETATM 13 C C18 LQ5 . . . B 2 30.113 4.656 10.262 1 30.14 ? C18 LQ5 1297 A 1 HETATM 14 N N19 LQ5 . . . B 2 30.913 3.927 11.067 1 28.96 ? N19 LQ5 1297 A 1 HETATM 15 C C20 LQ5 . . . B 2 30.524 3.392 12.312 1 32.9 ? C20 LQ5 1297 A 1 HETATM 16 C C21 LQ5 . . . B 2 31.551 3.213 13.264 1 33.26 ? C21 LQ5 1297 A 1 HETATM 17 C C22 LQ5 . . . B 2 31.221 2.716 14.525 1 31.61 ? C22 LQ5 1297 A 1 HETATM 18 C C23 LQ5 . . . B 2 29.885 2.43 14.868 1 32.02 ? C23 LQ5 1297 A 1 HETATM 19 C C24 LQ5 . . . B 2 28.849 2.627 13.914 1 33.43 ? C24 LQ5 1297 A 1 HETATM 20 C C25 LQ5 . . . B 2 27.368 2.334 14.243 1 35.51 ? C25 LQ5 1297 A 1 HETATM 21 F F26 LQ5 . . . B 2 26.913 3.215 15.17 1 36.89 ? F26 LQ5 1297 A 1 HETATM 22 F F27 LQ5 . . . B 2 27.26 1.067 14.708 1 36.89 ? F27 LQ5 1297 A 1 HETATM 23 F F28 LQ5 . . . B 2 26.529 2.47 13.2 1 34.23 ? F28 LQ5 1297 A 1 HETATM 24 C C29 LQ5 . . . B 2 29.181 3.11 12.647 1 31.43 ? C29 LQ5 1297 A 1 HETATM 25 C C30 LQ5 . . . B 2 29.634 1.88 16.304 1 32.98 ? C30 LQ5 1297 A 1 HETATM 26 N N31 LQ5 . . . B 2 30.326 2.668 17.355 1 35.38 ? N31 LQ5 1297 A 1 HETATM 27 C C32 LQ5 . . . B 2 29.987 4.124 17.473 1 34.23 ? C32 LQ5 1297 A 1 HETATM 28 N N30 LQ5 . . . B 2 26.448 8.37 3.752 1 31.12 ? N30 LQ5 1297 A 1 HETATM 29 C C33 LQ5 . . . B 2 31 4.783 18.451 1 35.5 ? C33 LQ5 1297 A 1 HETATM 30 N N34 LQ5 . . . B 2 31 4.068 19.769 1 32.58 ? N34 LQ5 1297 A 1 HETATM 31 C C26 LQ5 . . . B 2 28.852 6.529 8.347 1 35.21 ? C26 LQ5 1297 A 1 HETATM 32 C C35 LQ5 . . . B 2 31.427 2.655 19.599 1 33.09 ? C35 LQ5 1297 A 1 HETATM 33 C C36 LQ5 . . . B 2 30.421 1.937 18.655 1 35.35 ? C36 LQ5 1297 A 1 HETATM 34 C C37 LQ5 . . . B 2 31.877 4.796 20.732 1 33.37 ? C37 LQ5 1297 A 1 HETATM 35 O O39 LQ5 . . . B 2 28.919 4.866 10.511 1 29.72 ? O39 LQ5 1297 A 1 HETATM 36 N N20 LQ5 . . . B 2 30.72 5.171 9.175 1 29.43 ? N20 LQ5 1297 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #