data_5A1P # _model_server_result.job_id C0ZI8c9UI3ARfcIhrHl7_Q _model_server_result.datetime_utc '2024-11-26 00:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1500}' # _entry.id 5A1P # _exptl.entry_id 5A1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A1P _cell.length_a 77.34 _cell.length_b 102.17 _cell.length_c 125.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B FE HEM . A HEM 1500 1_555 E O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 149 n n CHA C4D HEM doub 150 n n CHA HHA HEM sing 151 n n CHB C4A HEM sing 152 n n CHB C1B HEM doub 153 n n CHB HHB HEM sing 154 n n CHC C4B HEM sing 155 n n CHC C1C HEM doub 156 n n CHC HHC HEM sing 157 n n CHD C4C HEM doub 158 n n CHD C1D HEM sing 159 n n CHD HHD HEM sing 160 n n C1A C2A HEM doub 161 n y C1A NA HEM sing 162 n y C2A C3A HEM sing 163 n y C2A CAA HEM sing 164 n n C3A C4A HEM doub 165 n y C3A CMA HEM sing 166 n n C4A NA HEM sing 167 n y CMA HMA HEM sing 168 n n CMA HMAA HEM sing 169 n n CMA HMAB HEM sing 170 n n CAA CBA HEM sing 171 n n CAA HAA HEM sing 172 n n CAA HAAA HEM sing 173 n n CBA CGA HEM sing 174 n n CBA HBA HEM sing 175 n n CBA HBAA HEM sing 176 n n CGA O1A HEM doub 177 n n CGA O2A HEM sing 178 n n C1B C2B HEM sing 179 n n C1B NB HEM sing 180 n n C2B C3B HEM doub 181 n n C2B CMB HEM sing 182 n n C3B C4B HEM sing 183 n n C3B CAB HEM sing 184 n n C4B NB HEM doub 185 n n CMB HMB HEM sing 186 n n CMB HMBA HEM sing 187 n n CMB HMBB HEM sing 188 n n CAB CBB HEM doub 189 n n CAB HAB HEM sing 190 n n CBB HBB HEM sing 191 n n CBB HBBA HEM sing 192 n n C1C C2C HEM sing 193 n y C1C NC HEM sing 194 n y C2C C3C HEM doub 195 n y C2C CMC HEM sing 196 n n C3C C4C HEM sing 197 n y C3C CAC HEM sing 198 n n C4C NC HEM sing 199 n y CMC HMC HEM sing 200 n n CMC HMCA HEM sing 201 n n CMC HMCB HEM sing 202 n n CAC CBC HEM doub 203 n n CAC HAC HEM sing 204 n n CBC HBC HEM sing 205 n n CBC HBCA HEM sing 206 n n C1D C2D HEM sing 207 n n C1D ND HEM doub 208 n n C2D C3D HEM doub 209 n n C2D CMD HEM sing 210 n n C3D C4D HEM sing 211 n n C3D CAD HEM sing 212 n n C4D ND HEM sing 213 n n CMD HMD HEM sing 214 n n CMD HMDA HEM sing 215 n n CMD HMDB HEM sing 216 n n CAD CBD HEM sing 217 n n CAD HAD HEM sing 218 n n CAD HADA HEM sing 219 n n CBD CGD HEM sing 220 n n CBD HBD HEM sing 221 n n CBD HBDA HEM sing 222 n n CGD O1D HEM doub 223 n n CGD O2D HEM sing 224 n n O2A H2A HEM sing 225 n n O2D H2D HEM sing 226 n n FE NA HEM sing 227 n n FE NB HEM sing 228 n n FE NC HEM sing 229 n n FE ND HEM sing 230 n n # _atom_sites.entry_id 5A1P _atom_sites.fract_transf_matrix[1][1] 0.01293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1500 1500 HEM HEM . C 3 STR A 1 1600 1600 STR STR . D 4 CIT A 1 1700 1700 CIT CIT . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.453 19.659 9.409 1 50.38 ? CHA HEM 1500 A 1 HETATM 2 C CHB HEM . . . B 2 -16.365 22.581 13.209 1 45.68 ? CHB HEM 1500 A 1 HETATM 3 C CHC HEM . . . B 2 -16.735 26.444 10.31 1 46.39 ? CHC HEM 1500 A 1 HETATM 4 C CHD HEM . . . B 2 -15.702 23.604 6.522 1 42.99 ? CHD HEM 1500 A 1 HETATM 5 C C1A HEM . . . B 2 -15.676 20.132 10.686 1 49.55 ? C1A HEM 1500 A 1 HETATM 6 C C2A HEM . . . B 2 -15.656 19.311 11.866 1 48.19 ? C2A HEM 1500 A 1 HETATM 7 C C3A HEM . . . B 2 -15.906 20.109 12.917 1 50.96 ? C3A HEM 1500 A 1 HETATM 8 C C4A HEM . . . B 2 -16.096 21.467 12.433 1 46.33 ? C4A HEM 1500 A 1 HETATM 9 C CMA HEM . . . B 2 -15.977 19.696 14.39 1 46.54 ? CMA HEM 1500 A 1 HETATM 10 C CAA HEM . . . B 2 -15.385 17.799 11.84 1 41.46 ? CAA HEM 1500 A 1 HETATM 11 C CBA HEM . . . B 2 -13.881 17.547 11.907 1 54.18 ? CBA HEM 1500 A 1 HETATM 12 C CGA HEM . . . B 2 -13.581 16.137 12.358 1 59.23 ? CGA HEM 1500 A 1 HETATM 13 O O1A HEM . . . B 2 -12.513 15.93 12.981 1 65.72 ? O1A HEM 1500 A 1 HETATM 14 O O2A HEM . . . B 2 -14.404 15.225 12.124 1 61.48 ? O2A HEM 1500 A 1 HETATM 15 C C1B HEM . . . B 2 -16.538 23.872 12.767 1 44.9 ? C1B HEM 1500 A 1 HETATM 16 C C2B HEM . . . B 2 -16.779 25.044 13.598 1 55.74 ? C2B HEM 1500 A 1 HETATM 17 C C3B HEM . . . B 2 -16.886 26.109 12.785 1 51.36 ? C3B HEM 1500 A 1 HETATM 18 C C4B HEM . . . B 2 -16.706 25.639 11.43 1 49.31 ? C4B HEM 1500 A 1 HETATM 19 C CMB HEM . . . B 2 -16.858 25 15.145 1 51.64 ? CMB HEM 1500 A 1 HETATM 20 C CAB HEM . . . B 2 -17.143 27.601 13.077 1 42.89 ? CAB HEM 1500 A 1 HETATM 21 C CBB HEM . . . B 2 -17.342 28.127 14.283 1 50.95 ? CBB HEM 1500 A 1 HETATM 22 C C1C HEM . . . B 2 -16.384 26.024 9.056 1 46.15 ? C1C HEM 1500 A 1 HETATM 23 C C2C HEM . . . B 2 -16.117 26.886 7.927 1 53.52 ? C2C HEM 1500 A 1 HETATM 24 C C3C HEM . . . B 2 -15.839 26.089 6.879 1 51.05 ? C3C HEM 1500 A 1 HETATM 25 C C4C HEM . . . B 2 -15.919 24.709 7.324 1 49.55 ? C4C HEM 1500 A 1 HETATM 26 C CMC HEM . . . B 2 -16.181 28.428 7.997 1 38.58 ? CMC HEM 1500 A 1 HETATM 27 C CAC HEM . . . B 2 -15.472 26.457 5.43 1 44.54 ? CAC HEM 1500 A 1 HETATM 28 C CBC HEM . . . B 2 -15.222 27.7 5.025 1 49.62 ? CBC HEM 1500 A 1 HETATM 29 C C1D HEM . . . B 2 -15.58 22.29 6.93 1 50.5 ? C1D HEM 1500 A 1 HETATM 30 C C2D HEM . . . B 2 -15.39 21.167 6.031 1 44.46 ? C2D HEM 1500 A 1 HETATM 31 C C3D HEM . . . B 2 -15.301 19.937 6.934 1 45.85 ? C3D HEM 1500 A 1 HETATM 32 C C4D HEM . . . B 2 -15.454 20.448 8.277 1 43.43 ? C4D HEM 1500 A 1 HETATM 33 C CMD HEM . . . B 2 -15.29 21.244 4.508 1 45.03 ? CMD HEM 1500 A 1 HETATM 34 C CAD HEM . . . B 2 -15.082 18.464 6.545 1 37.42 ? CAD HEM 1500 A 1 HETATM 35 C CBD HEM . . . B 2 -13.582 18.318 6.304 1 39.61 ? CBD HEM 1500 A 1 HETATM 36 C CGD HEM . . . B 2 -13.3 17 5.603 1 53.81 ? CGD HEM 1500 A 1 HETATM 37 O O1D HEM . . . B 2 -14.232 16.149 5.455 1 58.62 ? O1D HEM 1500 A 1 HETATM 38 O O2D HEM . . . B 2 -12.135 16.81 5.168 1 53.44 ? O2D HEM 1500 A 1 HETATM 39 N NA HEM . . . B 2 -15.952 21.438 11.069 1 46.82 ? NA HEM 1500 A 1 HETATM 40 N NB HEM . . . B 2 -16.492 24.279 11.46 1 47.37 ? NB HEM 1500 A 1 HETATM 41 N NC HEM . . . B 2 -16.269 24.71 8.651 1 50.62 ? NC HEM 1500 A 1 HETATM 42 N ND HEM . . . B 2 -15.608 21.826 8.24 1 41.28 ? ND HEM 1500 A 1 HETATM 43 FE FE HEM . . . B 2 -15.853 23.175 9.891 1 49.3 ? FE HEM 1500 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #