data_5A1P # _model_server_result.job_id akii70xXaRvwDcJ4VlcV4Q _model_server_result.datetime_utc '2024-10-13 03:27:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1600}' # _entry.id 5A1P # _exptl.entry_id 5A1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A1P _cell.length_a 77.34 _cell.length_b 102.17 _cell.length_c 125.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B FE HEM . A HEM 1500 1_555 E O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 392 n n C1 C10 STR sing 393 n n C1 H11 STR sing 394 n n C1 H12 STR sing 395 n n C2 C3 STR sing 396 n n C2 H21 STR sing 397 n n C2 H22 STR sing 398 n n C3 O3 STR doub 399 n n C3 C4 STR sing 400 n n C4 C5 STR doub 401 n n C4 H4 STR sing 402 n n C5 C6 STR sing 403 n n C5 C10 STR sing 404 n n C6 C7 STR sing 405 n n C6 H61 STR sing 406 n n C6 H62 STR sing 407 n n C7 C8 STR sing 408 n n C7 H71 STR sing 409 n n C7 H72 STR sing 410 n n C8 C9 STR sing 411 n n C8 C14 STR sing 412 n n C8 H8 STR sing 413 n n C9 C10 STR sing 414 n n C9 C11 STR sing 415 n n C9 H9 STR sing 416 n n C10 C19 STR sing 417 n n C11 C12 STR sing 418 n n C11 H111 STR sing 419 n n C11 H112 STR sing 420 n n C12 C13 STR sing 421 n n C12 H121 STR sing 422 n n C12 H122 STR sing 423 n n C13 C14 STR sing 424 n n C13 C17 STR sing 425 n n C13 C18 STR sing 426 n n C14 C15 STR sing 427 n n C14 H14 STR sing 428 n n C15 C16 STR sing 429 n n C15 H151 STR sing 430 n n C15 H152 STR sing 431 n n C16 C17 STR sing 432 n n C16 H161 STR sing 433 n n C16 H162 STR sing 434 n n C17 C20 STR sing 435 n n C17 H17 STR sing 436 n n C18 H181 STR sing 437 n n C18 H182 STR sing 438 n n C18 H183 STR sing 439 n n C19 H191 STR sing 440 n n C19 H192 STR sing 441 n n C19 H193 STR sing 442 n n C20 O20 STR doub 443 n n C20 C21 STR sing 444 n n C21 H211 STR sing 445 n n C21 H212 STR sing 446 n n C21 H213 STR sing 447 n n # _atom_sites.entry_id 5A1P _atom_sites.fract_transf_matrix[1][1] 0.01293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1500 1500 HEM HEM . C 3 STR A 1 1600 1600 STR STR . D 4 CIT A 1 1700 1700 CIT CIT . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . C 3 -39.509 17.272 4.478 1 85.4 ? C1 STR 1600 A 1 HETATM 2 C C2 STR . . . C 3 -40.687 16.677 3.703 1 83.77 ? C2 STR 1600 A 1 HETATM 3 C C3 STR . . . C 3 -40.206 16.365 2.31 1 84.79 ? C3 STR 1600 A 1 HETATM 4 O O3 STR . . . C 3 -40.984 16.403 1.36 1 89.25 ? O3 STR 1600 A 1 HETATM 5 C C4 STR . . . C 3 -38.788 15.98 2.12 1 77.29 ? C4 STR 1600 A 1 HETATM 6 C C5 STR . . . C 3 -37.909 15.919 3.143 1 72.08 ? C5 STR 1600 A 1 HETATM 7 C C6 STR . . . C 3 -36.51 15.409 2.872 1 56.27 ? C6 STR 1600 A 1 HETATM 8 C C7 STR . . . C 3 -35.487 16.349 3.487 1 70.17 ? C7 STR 1600 A 1 HETATM 9 C C8 STR . . . C 3 -35.74 16.54 4.979 1 80.78 ? C8 STR 1600 A 1 HETATM 10 C C9 STR . . . C 3 -37.15 17.106 5.219 1 83.66 ? C9 STR 1600 A 1 HETATM 11 C C10 STR . . . C 3 -38.303 16.341 4.542 1 78.13 ? C10 STR 1600 A 1 HETATM 12 C C11 STR . . . C 3 -37.381 17.351 6.722 1 79.98 ? C11 STR 1600 A 1 HETATM 13 C C12 STR . . . C 3 -36.331 18.285 7.342 1 78.58 ? C12 STR 1600 A 1 HETATM 14 C C13 STR . . . C 3 -34.909 17.79 7.094 1 80.72 ? C13 STR 1600 A 1 HETATM 15 C C14 STR . . . C 3 -34.746 17.536 5.594 1 81.41 ? C14 STR 1600 A 1 HETATM 16 C C15 STR . . . C 3 -33.259 17.269 5.444 1 86.38 ? C15 STR 1600 A 1 HETATM 17 C C16 STR . . . C 3 -32.633 18.234 6.463 1 86.88 ? C16 STR 1600 A 1 HETATM 18 C C17 STR . . . C 3 -33.747 18.751 7.384 1 85.8 ? C17 STR 1600 A 1 HETATM 19 C C18 STR . . . C 3 -34.649 16.525 7.906 1 75.62 ? C18 STR 1600 A 1 HETATM 20 C C19 STR . . . C 3 -38.718 15.084 5.307 1 72.16 ? C19 STR 1600 A 1 HETATM 21 C C20 STR . . . C 3 -33.261 18.863 8.833 1 87.03 ? C20 STR 1600 A 1 HETATM 22 O O20 STR . . . C 3 -32.208 18.35 9.221 1 84.6 ? O20 STR 1600 A 1 HETATM 23 C C21 STR . . . C 3 -34.07 19.658 9.816 1 79.37 ? C21 STR 1600 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #