data_5A1R # _model_server_result.job_id CLHa1uUNoZb-xd0Aw3nlDg _model_server_result.datetime_utc '2024-11-22 04:31:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 5A1R # _exptl.entry_id 5A1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A1R _cell.length_a 77.75 _cell.length_b 102.14 _cell.length_c 129.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 C FE HEM . A HEM 1500 1_555 D O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 372 n n C1 C10 STR sing 373 n n C1 H11 STR sing 374 n n C1 H12 STR sing 375 n n C2 C3 STR sing 376 n n C2 H21 STR sing 377 n n C2 H22 STR sing 378 n n C3 O3 STR doub 379 n n C3 C4 STR sing 380 n n C4 C5 STR doub 381 n n C4 H4 STR sing 382 n n C5 C6 STR sing 383 n n C5 C10 STR sing 384 n n C6 C7 STR sing 385 n n C6 H61 STR sing 386 n n C6 H62 STR sing 387 n n C7 C8 STR sing 388 n n C7 H71 STR sing 389 n n C7 H72 STR sing 390 n n C8 C9 STR sing 391 n n C8 C14 STR sing 392 n n C8 H8 STR sing 393 n n C9 C10 STR sing 394 n n C9 C11 STR sing 395 n n C9 H9 STR sing 396 n n C10 C19 STR sing 397 n n C11 C12 STR sing 398 n n C11 H111 STR sing 399 n n C11 H112 STR sing 400 n n C12 C13 STR sing 401 n n C12 H121 STR sing 402 n n C12 H122 STR sing 403 n n C13 C14 STR sing 404 n n C13 C17 STR sing 405 n n C13 C18 STR sing 406 n n C14 C15 STR sing 407 n n C14 H14 STR sing 408 n n C15 C16 STR sing 409 n n C15 H151 STR sing 410 n n C15 H152 STR sing 411 n n C16 C17 STR sing 412 n n C16 H161 STR sing 413 n n C16 H162 STR sing 414 n n C17 C20 STR sing 415 n n C17 H17 STR sing 416 n n C18 H181 STR sing 417 n n C18 H182 STR sing 418 n n C18 H183 STR sing 419 n n C19 H191 STR sing 420 n n C19 H192 STR sing 421 n n C19 H193 STR sing 422 n n C20 O20 STR doub 423 n n C20 C21 STR sing 424 n n C21 H211 STR sing 425 n n C21 H212 STR sing 426 n n C21 H213 STR sing 427 n n # _atom_sites.entry_id 5A1R _atom_sites.fract_transf_matrix[1][1] 0.012862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STR A 1 600 600 STR STR . C 3 HEM A 1 1500 1500 HEM HEM . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . B 2 -39.553 -17.458 -4.772 1 76.61 ? C1 STR 600 A 1 HETATM 2 C C2 STR . . . B 2 -40.692 -16.729 -4.07 1 73.67 ? C2 STR 600 A 1 HETATM 3 C C3 STR . . . B 2 -40.216 -16.451 -2.667 1 78.97 ? C3 STR 600 A 1 HETATM 4 O O3 STR . . . B 2 -40.964 -16.592 -1.704 1 94.23 ? O3 STR 600 A 1 HETATM 5 C C4 STR . . . B 2 -38.823 -15.995 -2.488 1 72.37 ? C4 STR 600 A 1 HETATM 6 C C5 STR . . . B 2 -37.931 -16.03 -3.502 1 72.05 ? C5 STR 600 A 1 HETATM 7 C C6 STR . . . B 2 -36.545 -15.466 -3.277 1 61.61 ? C6 STR 600 A 1 HETATM 8 C C7 STR . . . B 2 -35.466 -16.344 -3.892 1 69.09 ? C7 STR 600 A 1 HETATM 9 C C8 STR . . . B 2 -35.769 -16.727 -5.331 1 74.36 ? C8 STR 600 A 1 HETATM 10 C C9 STR . . . B 2 -37.135 -17.433 -5.394 1 78.76 ? C9 STR 600 A 1 HETATM 11 C C10 STR . . . B 2 -38.302 -16.586 -4.859 1 76.13 ? C10 STR 600 A 1 HETATM 12 C C11 STR . . . B 2 -37.399 -17.984 -6.803 1 78.96 ? C11 STR 600 A 1 HETATM 13 C C12 STR . . . B 2 -36.261 -18.863 -7.355 1 75.95 ? C12 STR 600 A 1 HETATM 14 C C13 STR . . . B 2 -34.929 -18.126 -7.341 1 78.21 ? C13 STR 600 A 1 HETATM 15 C C14 STR . . . B 2 -34.7 -17.675 -5.896 1 79.26 ? C14 STR 600 A 1 HETATM 16 C C15 STR . . . B 2 -33.234 -17.246 -5.859 1 80.39 ? C15 STR 600 A 1 HETATM 17 C C16 STR . . . B 2 -32.551 -18.198 -6.853 1 79.8 ? C16 STR 600 A 1 HETATM 18 C C17 STR . . . B 2 -33.655 -18.95 -7.616 1 76.07 ? C17 STR 600 A 1 HETATM 19 C C18 STR . . . B 2 -34.967 -16.932 -8.305 1 70.91 ? C18 STR 600 A 1 HETATM 20 C C19 STR . . . B 2 -38.626 -15.366 -5.722 1 76.62 ? C19 STR 600 A 1 HETATM 21 C C20 STR . . . B 2 -33.248 -19.225 -9.061 1 75.36 ? C20 STR 600 A 1 HETATM 22 O O20 STR . . . B 2 -32.35 -18.589 -9.623 1 67.08 ? O20 STR 600 A 1 HETATM 23 C C21 STR . . . B 2 -33.933 -20.347 -9.79 1 72.76 ? C21 STR 600 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #