data_5A2E # _model_server_result.job_id 2WpwVf7rSpEMIlUHYyf0eQ _model_server_result.datetime_utc '2024-11-23 01:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1367}' # _entry.id 5A2E # _exptl.entry_id 5A2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A2E _cell.length_a 161.48 _cell.length_b 161.48 _cell.length_c 93.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 144 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 83 A CYS 83 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 129 A CYS 129 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 170 A CYS 170 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 186 A CYS 186 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 199 A CYS 199 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 230 A CYS 230 1_555 A SG CYS 240 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 274 A CYS 274 1_555 A SG CYS 308 A CYS 308 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 290 A CYS 290 1_555 A SG CYS 350 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 303 A CYS 303 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 A SG CYS 330 A CYS 330 1_555 A SG CYS 340 A CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 229 A ASN 229 1_555 B C1 NAG . A NAG 1367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5A2E _atom_sites.fract_transf_matrix[1][1] 0.006193 _atom_sites.fract_transf_matrix[1][2] 0.003575 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1367 1367 NAG NAG . C 3 EDO A 1 1368 1368 EDO EDO . D 3 EDO A 1 1369 1369 EDO EDO . E 3 EDO A 1 1370 1370 EDO EDO . F 3 EDO A 1 1371 1371 EDO EDO . G 3 EDO A 1 1372 1372 EDO EDO . H 3 EDO A 1 1373 1373 EDO EDO . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -60.078 19.932 -25.786 1 60 ? C1 NAG 1367 A 1 HETATM 2 C C2 NAG . . . B 2 -59.748 20.227 -27.249 1 60.82 ? C2 NAG 1367 A 1 HETATM 3 C C3 NAG . . . B 2 -58.828 19.137 -27.798 1 60.91 ? C3 NAG 1367 A 1 HETATM 4 C C4 NAG . . . B 2 -57.593 18.99 -26.917 1 61.07 ? C4 NAG 1367 A 1 HETATM 5 C C5 NAG . . . B 2 -58.015 18.725 -25.475 1 61.2 ? C5 NAG 1367 A 1 HETATM 6 C C6 NAG . . . B 2 -56.851 18.675 -24.512 1 61.55 ? C6 NAG 1367 A 1 HETATM 7 C C7 NAG . . . B 2 -61.177 21.173 -29.027 1 61.72 ? C7 NAG 1367 A 1 HETATM 8 C C8 NAG . . . B 2 -62.519 21.104 -29.691 1 61.74 ? C8 NAG 1367 A 1 HETATM 9 N N2 NAG . . . B 2 -60.974 20.298 -28.029 1 61.35 ? N2 NAG 1367 A 1 HETATM 10 O O3 NAG . . . B 2 -58.436 19.472 -29.124 1 60.77 ? O3 NAG 1367 A 1 HETATM 11 O O4 NAG . . . B 2 -56.794 17.91 -27.385 1 61.09 ? O4 NAG 1367 A 1 HETATM 12 O O5 NAG . . . B 2 -58.879 19.781 -25.023 1 60.68 ? O5 NAG 1367 A 1 HETATM 13 O O6 NAG . . . B 2 -57.282 18.326 -23.203 1 61.56 ? O6 NAG 1367 A 1 HETATM 14 O O7 NAG . . . B 2 -60.317 21.973 -29.383 1 61.82 ? O7 NAG 1367 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #