data_5A2I
#
_model_server_result.job_id            OAGT1smarIrL2D7Cdyqzhg 
_model_server_result.datetime_utc      '2024-10-12 15:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a2i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1009}' 
#
_entry.id    5A2I 
#
_exptl.entry_id    5A2I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-galactopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A2I 
_cell.length_a            33.181 
_cell.length_b            66.006 
_cell.length_c            90.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A2I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
covale ? covale1 B OG SER 4 P SER 4 1_555 E C1 A2G . P A2G 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                A2G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-galactopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 A2G sing 1 n n 
C1 O5 A2G sing 2 n n 
C1 C2 A2G sing 3 n n 
C1 H1 A2G sing 4 n n 
O1 C1 A2G sing 5 n n 
O1 HO1 A2G sing 6 n n 
C2 C3 A2G sing 7 n n 
C2 H2 A2G sing 8 n n 
N2 C2 A2G sing 9 n n 
N2 HN2 A2G sing 10 n n 
C3 C4 A2G sing 11 n n 
C3 O3 A2G sing 12 n n 
C3 H3 A2G sing 13 n n 
O3 HO3 A2G sing 14 n n 
C4 O4 A2G sing 15 n n 
C4 H4 A2G sing 16 n n 
O4 HO4 A2G sing 17 n n 
C5 C4 A2G sing 18 n n 
C5 C6 A2G sing 19 n n 
C5 H5 A2G sing 20 n n 
C6 O6 A2G sing 21 n n 
C6 H61 A2G sing 22 n n 
C7 N2 A2G sing 23 n n 
O7 C7 A2G doub 24 n n 
C8 C7 A2G sing 25 n n 
C8 H81 A2G sing 26 n n 
C8 H82 A2G sing 27 n n 
C8 H83 A2G sing 28 n n 
C6 H62 A2G sing 29 n n 
O6 HO6 A2G sing 30 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 
A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5A2I 
_atom_sites.fract_transf_matrix[1][1]    0.030138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO H 1 3113 3113 EDO EDO . 
D 3 EDO H 1 3108 3108 EDO EDO . 
E 4 A2G P 1 1009 1009 A2G A2G . 
F 5 HOH H 1 2001 2001 HOH HOH . 
F 5 HOH H 2 2002 2002 HOH HOH . 
F 5 HOH H 3 2003 2003 HOH HOH . 
F 5 HOH H 4 2004 2004 HOH HOH . 
F 5 HOH H 5 2005 2005 HOH HOH . 
F 5 HOH H 6 2006 2006 HOH HOH . 
F 5 HOH H 7 2007 2007 HOH HOH . 
F 5 HOH H 8 2008 2008 HOH HOH . 
F 5 HOH H 9 2009 2009 HOH HOH . 
F 5 HOH H 10 2010 2010 HOH HOH . 
F 5 HOH H 11 2011 2011 HOH HOH . 
F 5 HOH H 12 2012 2012 HOH HOH . 
F 5 HOH H 13 2013 2013 HOH HOH . 
F 5 HOH H 14 2014 2014 HOH HOH . 
F 5 HOH H 15 2015 2015 HOH HOH . 
F 5 HOH H 16 2016 2016 HOH HOH . 
F 5 HOH H 17 2017 2017 HOH HOH . 
F 5 HOH H 18 2018 2018 HOH HOH . 
F 5 HOH H 19 2019 2019 HOH HOH . 
F 5 HOH H 20 2020 2020 HOH HOH . 
F 5 HOH H 21 2021 2021 HOH HOH . 
F 5 HOH H 22 2022 2022 HOH HOH . 
F 5 HOH H 23 2023 2023 HOH HOH . 
F 5 HOH H 24 2024 2024 HOH HOH . 
F 5 HOH H 25 2025 2025 HOH HOH . 
F 5 HOH H 26 2026 2026 HOH HOH . 
F 5 HOH H 27 2027 2027 HOH HOH . 
F 5 HOH H 28 2028 2028 HOH HOH . 
F 5 HOH H 29 2029 2029 HOH HOH . 
F 5 HOH H 30 2030 2030 HOH HOH . 
F 5 HOH H 31 2031 2031 HOH HOH . 
F 5 HOH H 32 2032 2032 HOH HOH . 
F 5 HOH H 33 2033 2033 HOH HOH . 
F 5 HOH H 34 2034 2034 HOH HOH . 
F 5 HOH H 35 2035 2035 HOH HOH . 
F 5 HOH H 36 2036 2036 HOH HOH . 
F 5 HOH H 37 2037 2037 HOH HOH . 
F 5 HOH H 38 2038 2038 HOH HOH . 
F 5 HOH H 39 2039 2039 HOH HOH . 
F 5 HOH H 40 2040 2040 HOH HOH . 
F 5 HOH H 41 2041 2041 HOH HOH . 
F 5 HOH H 42 2042 2042 HOH HOH . 
F 5 HOH H 43 2043 2043 HOH HOH . 
F 5 HOH H 44 2044 2044 HOH HOH . 
F 5 HOH H 45 2045 2045 HOH HOH . 
F 5 HOH H 46 2046 2046 HOH HOH . 
F 5 HOH H 47 2047 2047 HOH HOH . 
F 5 HOH H 48 2048 2048 HOH HOH . 
F 5 HOH H 49 2049 2049 HOH HOH . 
F 5 HOH H 50 2050 2050 HOH HOH . 
F 5 HOH H 51 2051 2051 HOH HOH . 
F 5 HOH H 52 2052 2052 HOH HOH . 
F 5 HOH H 53 2053 2053 HOH HOH . 
F 5 HOH H 54 2054 2054 HOH HOH . 
F 5 HOH H 55 2055 2055 HOH HOH . 
F 5 HOH H 56 2056 2056 HOH HOH . 
F 5 HOH H 57 2057 2057 HOH HOH . 
F 5 HOH H 58 2058 2058 HOH HOH . 
F 5 HOH H 59 2059 2059 HOH HOH . 
G 5 HOH P 1 2001 2001 HOH HOH . 
G 5 HOH P 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 A2G . . . E 4 17.591 14.081 5.682 1 57.62 ? O5 A2G 1009 P 1 
HETATM 2 C C1 A2G . . . E 4 17.251 13.993 4.28 1 53.43 ? C1 A2G 1009 P 1 
HETATM 3 C C2 A2G . . . E 4 17.338 15.455 3.786 1 61.96 ? C2 A2G 1009 P 1 
HETATM 4 N N2 A2G . . . E 4 16.934 15.729 2.419 1 62.27 ? N2 A2G 1009 P 1 
HETATM 5 C C3 A2G . . . E 4 18.729 16.05 3.956 1 66.27 ? C3 A2G 1009 P 1 
HETATM 6 O O3 A2G . . . E 4 18.717 17.414 3.526 1 68.67 ? O3 A2G 1009 P 1 
HETATM 7 C C4 A2G . . . E 4 19.072 15.962 5.433 1 68.38 ? C4 A2G 1009 P 1 
HETATM 8 O O4 A2G . . . E 4 18.13 16.757 6.172 1 72.73 ? O4 A2G 1009 P 1 
HETATM 9 C C5 A2G . . . E 4 18.972 14.495 5.848 1 63.21 ? C5 A2G 1009 P 1 
HETATM 10 C C6 A2G . . . E 4 19.584 14.222 7.231 1 61.22 ? C6 A2G 1009 P 1 
HETATM 11 O O6 A2G . . . E 4 18.786 14.652 8.341 1 58.23 ? O6 A2G 1009 P 1 
HETATM 12 C C7 A2G . . . E 4 15.815 16.427 2.204 1 64.23 ? C7 A2G 1009 P 1 
HETATM 13 O O7 A2G . . . E 4 15.119 16.812 3.122 1 59.98 ? O7 A2G 1009 P 1 
HETATM 14 C C8 A2G . . . E 4 15.429 16.703 0.781 1 67.91 ? C8 A2G 1009 P 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#