data_5A2J
#
_model_server_result.job_id            s5EyHMbhbSnOlWF3vsLa0g 
_model_server_result.datetime_utc      '2024-11-14 07:20:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2109}' 
#
_entry.id    5A2J 
#
_exptl.entry_id    5A2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.99 
_cell.angle_gamma         90 
_cell.entry_id            5A2J 
_cell.length_a            45.853 
_cell.length_b            35.486 
_cell.length_c            69.518 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5A2J 
_atom_sites.fract_transf_matrix[1][1]    0.021809 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00345 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02818 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO H 1 2108 2108 EDO EDO . 
D 3 EDO H 1 2109 2109 EDO EDO . 
E 3 EDO H 1 2110 2110 EDO EDO . 
F 3 EDO H 1 2111 2111 EDO EDO . 
G 4 HOH H 1 3001 3001 HOH HOH . 
G 4 HOH H 2 3002 3002 HOH HOH . 
G 4 HOH H 3 3003 3003 HOH HOH . 
G 4 HOH H 4 3004 3004 HOH HOH . 
G 4 HOH H 5 3005 3005 HOH HOH . 
G 4 HOH H 6 3006 3006 HOH HOH . 
G 4 HOH H 7 3007 3007 HOH HOH . 
G 4 HOH H 8 3008 3008 HOH HOH . 
G 4 HOH H 9 3009 3009 HOH HOH . 
G 4 HOH H 10 3010 3010 HOH HOH . 
G 4 HOH H 11 3011 3011 HOH HOH . 
G 4 HOH H 12 3012 3012 HOH HOH . 
G 4 HOH H 13 3013 3013 HOH HOH . 
G 4 HOH H 14 3014 3014 HOH HOH . 
G 4 HOH H 15 3015 3015 HOH HOH . 
G 4 HOH H 16 3016 3016 HOH HOH . 
G 4 HOH H 17 3017 3017 HOH HOH . 
G 4 HOH H 18 3018 3018 HOH HOH . 
G 4 HOH H 19 3019 3019 HOH HOH . 
G 4 HOH H 20 3020 3020 HOH HOH . 
G 4 HOH H 21 3021 3021 HOH HOH . 
G 4 HOH H 22 3022 3022 HOH HOH . 
G 4 HOH H 23 3023 3023 HOH HOH . 
G 4 HOH H 24 3024 3024 HOH HOH . 
G 4 HOH H 25 3025 3025 HOH HOH . 
G 4 HOH H 26 3026 3026 HOH HOH . 
G 4 HOH H 27 3027 3027 HOH HOH . 
G 4 HOH H 28 3028 3028 HOH HOH . 
G 4 HOH H 29 3029 3029 HOH HOH . 
G 4 HOH H 30 3030 3030 HOH HOH . 
G 4 HOH H 31 3031 3031 HOH HOH . 
G 4 HOH H 32 3032 3032 HOH HOH . 
G 4 HOH H 33 3033 3033 HOH HOH . 
G 4 HOH H 34 3034 3034 HOH HOH . 
G 4 HOH H 35 3035 3035 HOH HOH . 
G 4 HOH H 36 3036 3036 HOH HOH . 
G 4 HOH H 37 3037 3037 HOH HOH . 
G 4 HOH H 38 3038 3038 HOH HOH . 
G 4 HOH H 39 3039 3039 HOH HOH . 
G 4 HOH H 40 3040 3040 HOH HOH . 
G 4 HOH H 41 3041 3041 HOH HOH . 
G 4 HOH H 42 3042 3042 HOH HOH . 
G 4 HOH H 43 3043 3043 HOH HOH . 
G 4 HOH H 44 3044 3044 HOH HOH . 
G 4 HOH H 45 3045 3045 HOH HOH . 
G 4 HOH H 46 3046 3046 HOH HOH . 
G 4 HOH H 47 3047 3047 HOH HOH . 
G 4 HOH H 48 3048 3048 HOH HOH . 
G 4 HOH H 49 3049 3049 HOH HOH . 
G 4 HOH H 50 3050 3050 HOH HOH . 
G 4 HOH H 51 3051 3051 HOH HOH . 
G 4 HOH H 52 3052 3052 HOH HOH . 
G 4 HOH H 53 3053 3053 HOH HOH . 
G 4 HOH H 54 3054 3054 HOH HOH . 
G 4 HOH H 55 3055 3055 HOH HOH . 
G 4 HOH H 56 3056 3056 HOH HOH . 
G 4 HOH H 57 3057 3057 HOH HOH . 
G 4 HOH H 58 3058 3058 HOH HOH . 
G 4 HOH H 59 3059 3059 HOH HOH . 
G 4 HOH H 60 3060 3060 HOH HOH . 
G 4 HOH H 61 3061 3061 HOH HOH . 
G 4 HOH H 62 3062 3062 HOH HOH . 
G 4 HOH H 63 3063 3063 HOH HOH . 
G 4 HOH H 64 3064 3064 HOH HOH . 
G 4 HOH H 65 3065 3065 HOH HOH . 
G 4 HOH H 66 3066 3066 HOH HOH . 
G 4 HOH H 67 3067 3067 HOH HOH . 
G 4 HOH H 68 3068 3068 HOH HOH . 
G 4 HOH H 69 3069 3069 HOH HOH . 
G 4 HOH H 70 3070 3070 HOH HOH . 
G 4 HOH H 71 3071 3071 HOH HOH . 
G 4 HOH H 72 3072 3072 HOH HOH . 
G 4 HOH H 73 3073 3073 HOH HOH . 
G 4 HOH H 74 3074 3074 HOH HOH . 
G 4 HOH H 75 3075 3075 HOH HOH . 
G 4 HOH H 76 3076 3076 HOH HOH . 
G 4 HOH H 77 3077 3077 HOH HOH . 
G 4 HOH H 78 3078 3078 HOH HOH . 
G 4 HOH H 79 3079 3079 HOH HOH . 
G 4 HOH H 80 3080 3080 HOH HOH . 
G 4 HOH H 81 3081 3081 HOH HOH . 
G 4 HOH H 82 3082 3082 HOH HOH . 
G 4 HOH H 83 3083 3083 HOH HOH . 
G 4 HOH H 84 3084 3084 HOH HOH . 
G 4 HOH H 85 3085 3085 HOH HOH . 
G 4 HOH H 86 3086 3086 HOH HOH . 
G 4 HOH H 87 3087 3087 HOH HOH . 
G 4 HOH H 88 3088 3088 HOH HOH . 
G 4 HOH H 89 3089 3089 HOH HOH . 
G 4 HOH H 90 3090 3090 HOH HOH . 
G 4 HOH H 91 3091 3091 HOH HOH . 
G 4 HOH H 92 3092 3092 HOH HOH . 
G 4 HOH H 93 3093 3093 HOH HOH . 
G 4 HOH H 94 3094 3094 HOH HOH . 
G 4 HOH H 95 3095 3095 HOH HOH . 
G 4 HOH H 96 3096 3096 HOH HOH . 
G 4 HOH H 97 3097 3097 HOH HOH . 
G 4 HOH H 98 3098 3098 HOH HOH . 
G 4 HOH H 99 3099 3099 HOH HOH . 
G 4 HOH H 100 3100 3100 HOH HOH . 
G 4 HOH H 101 3101 3101 HOH HOH . 
G 4 HOH H 102 3102 3102 HOH HOH . 
G 4 HOH H 103 3103 3103 HOH HOH . 
G 4 HOH H 104 3104 3104 HOH HOH . 
G 4 HOH H 105 3105 3105 HOH HOH . 
G 4 HOH H 106 3106 3106 HOH HOH . 
G 4 HOH H 107 3107 3107 HOH HOH . 
G 4 HOH H 108 3108 3108 HOH HOH . 
G 4 HOH H 109 3109 3109 HOH HOH . 
G 4 HOH H 110 3110 3110 HOH HOH . 
G 4 HOH H 111 3111 3111 HOH HOH . 
G 4 HOH H 112 3112 3112 HOH HOH . 
G 4 HOH H 113 3113 3113 HOH HOH . 
G 4 HOH H 114 3114 3114 HOH HOH . 
G 4 HOH H 115 3115 3115 HOH HOH . 
G 4 HOH H 116 3116 3116 HOH HOH . 
G 4 HOH H 117 3117 3117 HOH HOH . 
G 4 HOH H 118 3118 3118 HOH HOH . 
G 4 HOH H 119 3119 3119 HOH HOH . 
G 4 HOH H 120 3120 3120 HOH HOH . 
G 4 HOH H 121 3121 3121 HOH HOH . 
G 4 HOH H 122 3122 3122 HOH HOH . 
G 4 HOH H 123 3123 3123 HOH HOH . 
G 4 HOH H 124 3124 3124 HOH HOH . 
G 4 HOH H 125 3125 3125 HOH HOH . 
G 4 HOH H 126 3126 3126 HOH HOH . 
G 4 HOH H 127 3127 3127 HOH HOH . 
G 4 HOH H 128 3128 3128 HOH HOH . 
G 4 HOH H 129 3129 3129 HOH HOH . 
G 4 HOH H 130 3130 3130 HOH HOH . 
G 4 HOH H 131 3131 3131 HOH HOH . 
G 4 HOH H 132 3132 3132 HOH HOH . 
G 4 HOH H 133 3133 3133 HOH HOH . 
G 4 HOH H 134 3134 3134 HOH HOH . 
G 4 HOH H 135 3135 3135 HOH HOH . 
G 4 HOH H 136 3136 3136 HOH HOH . 
G 4 HOH H 137 3137 3137 HOH HOH . 
G 4 HOH H 138 3138 3138 HOH HOH . 
G 4 HOH H 139 3139 3139 HOH HOH . 
G 4 HOH H 140 3140 3140 HOH HOH . 
G 4 HOH H 141 3141 3141 HOH HOH . 
G 4 HOH H 142 3142 3142 HOH HOH . 
G 4 HOH H 143 3143 3143 HOH HOH . 
G 4 HOH H 144 3144 3144 HOH HOH . 
G 4 HOH H 145 3145 3145 HOH HOH . 
G 4 HOH H 146 3146 3146 HOH HOH . 
G 4 HOH H 147 3147 3147 HOH HOH . 
G 4 HOH H 148 3148 3148 HOH HOH . 
G 4 HOH H 149 3149 3149 HOH HOH . 
G 4 HOH H 150 3150 3150 HOH HOH . 
G 4 HOH H 151 3151 3151 HOH HOH . 
G 4 HOH H 152 3152 3152 HOH HOH . 
G 4 HOH H 153 3153 3153 HOH HOH . 
G 4 HOH H 154 3154 3154 HOH HOH . 
G 4 HOH H 155 3155 3155 HOH HOH . 
G 4 HOH H 156 3156 3156 HOH HOH . 
G 4 HOH H 157 3157 3157 HOH HOH . 
G 4 HOH H 158 3158 3158 HOH HOH . 
G 4 HOH H 159 3159 3159 HOH HOH . 
G 4 HOH H 160 3160 3160 HOH HOH . 
G 4 HOH H 161 3161 3161 HOH HOH . 
G 4 HOH H 162 3162 3162 HOH HOH . 
G 4 HOH H 163 3163 3163 HOH HOH . 
G 4 HOH H 164 3164 3164 HOH HOH . 
G 4 HOH H 165 3165 3165 HOH HOH . 
G 4 HOH H 166 3166 3166 HOH HOH . 
G 4 HOH H 167 3167 3167 HOH HOH . 
G 4 HOH H 168 3168 3168 HOH HOH . 
G 4 HOH H 169 3169 3169 HOH HOH . 
G 4 HOH H 170 3170 3170 HOH HOH . 
G 4 HOH H 171 3171 3171 HOH HOH . 
G 4 HOH H 172 3172 3172 HOH HOH . 
G 4 HOH H 173 3173 3173 HOH HOH . 
G 4 HOH H 174 3174 3174 HOH HOH . 
G 4 HOH H 175 3175 3175 HOH HOH . 
G 4 HOH H 176 3176 3176 HOH HOH . 
G 4 HOH H 177 3177 3177 HOH HOH . 
G 4 HOH H 178 3178 3178 HOH HOH . 
G 4 HOH H 179 3179 3179 HOH HOH . 
G 4 HOH H 180 3180 3180 HOH HOH . 
G 4 HOH H 181 3181 3181 HOH HOH . 
G 4 HOH H 182 3182 3182 HOH HOH . 
G 4 HOH H 183 3183 3183 HOH HOH . 
G 4 HOH H 184 3184 3184 HOH HOH . 
G 4 HOH H 185 3185 3185 HOH HOH . 
G 4 HOH H 186 3186 3186 HOH HOH . 
G 4 HOH H 187 3187 3187 HOH HOH . 
G 4 HOH H 188 3188 3188 HOH HOH . 
G 4 HOH H 189 3189 3189 HOH HOH . 
G 4 HOH H 190 3190 3190 HOH HOH . 
G 4 HOH H 191 3191 3191 HOH HOH . 
G 4 HOH H 192 3192 3192 HOH HOH . 
G 4 HOH H 193 3193 3193 HOH HOH . 
G 4 HOH H 194 3194 3194 HOH HOH . 
G 4 HOH H 195 3195 3195 HOH HOH . 
G 4 HOH H 196 3196 3196 HOH HOH . 
G 4 HOH H 197 3197 3197 HOH HOH . 
G 4 HOH H 198 3198 3198 HOH HOH . 
H 4 HOH P 1 3201 3201 HOH HOH . 
H 4 HOH P 2 3202 3202 HOH HOH . 
H 4 HOH P 3 3203 3203 HOH HOH . 
H 4 HOH P 4 3204 3204 HOH HOH . 
H 4 HOH P 5 3205 3205 HOH HOH . 
H 4 HOH P 6 3206 3206 HOH HOH . 
H 4 HOH P 7 3207 3207 HOH HOH . 
H 4 HOH P 8 3208 3208 HOH HOH . 
H 4 HOH P 9 3209 3209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 5.44 -8.707 16.471 1 20.44 ? C1 EDO 2109 H 1 
HETATM 2 O O1 EDO . . . D 3 5.978 -9.411 15.391 1 19.63 ? O1 EDO 2109 H 1 
HETATM 3 C C2 EDO . . . D 3 4.26 -7.871 16.103 1 19.14 ? C2 EDO 2109 H 1 
HETATM 4 O O2 EDO . . . D 3 3.145 -8.2 16.864 1 21.19 ? O2 EDO 2109 H 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#