data_5A2L
#
_model_server_result.job_id            Ndofd0lkUXKz7Zuo5pmRzQ 
_model_server_result.datetime_utc      '2024-11-14 07:44:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1009}' 
#
_entry.id    5A2L 
#
_exptl.entry_id    5A2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-galactopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.01 
_cell.angle_gamma         90 
_cell.entry_id            5A2L 
_cell.length_a            46.08 
_cell.length_b            35.19 
_cell.length_c            66.29 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 B SG CYS 4 P CYS 4 1_555 G C1 A2G . P A2G 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                A2G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-galactopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 A2G sing 1 n n 
C1 O5 A2G sing 2 n n 
C1 C2 A2G sing 3 n n 
C1 H1 A2G sing 4 n n 
O1 C1 A2G sing 5 n n 
O1 HO1 A2G sing 6 n n 
C2 C3 A2G sing 7 n n 
C2 H2 A2G sing 8 n n 
N2 C2 A2G sing 9 n n 
N2 HN2 A2G sing 10 n n 
C3 C4 A2G sing 11 n n 
C3 O3 A2G sing 12 n n 
C3 H3 A2G sing 13 n n 
O3 HO3 A2G sing 14 n n 
C4 O4 A2G sing 15 n n 
C4 H4 A2G sing 16 n n 
O4 HO4 A2G sing 17 n n 
C5 C4 A2G sing 18 n n 
C5 C6 A2G sing 19 n n 
C5 H5 A2G sing 20 n n 
C6 O6 A2G sing 21 n n 
C6 H61 A2G sing 22 n n 
C7 N2 A2G sing 23 n n 
O7 C7 A2G doub 24 n n 
C8 C7 A2G sing 25 n n 
C8 H81 A2G sing 26 n n 
C8 H82 A2G sing 27 n n 
C8 H83 A2G sing 28 n n 
C6 H62 A2G sing 29 n n 
O6 HO6 A2G sing 30 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 
A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5A2L 
_atom_sites.fract_transf_matrix[1][1]    0.021701 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO H 1 3001 3001 EDO EDO . 
D 3 EDO H 1 3002 3002 EDO EDO . 
E 3 EDO H 1 3003 3003 EDO EDO . 
F 3 EDO H 1 3004 3004 EDO EDO . 
G 4 A2G P 1 1009 1009 A2G A2G . 
H 5 HOH H 1 2001 2001 HOH HOH . 
H 5 HOH H 2 2002 2002 HOH HOH . 
H 5 HOH H 3 2003 2003 HOH HOH . 
H 5 HOH H 4 2004 2004 HOH HOH . 
H 5 HOH H 5 2005 2005 HOH HOH . 
H 5 HOH H 6 2006 2006 HOH HOH . 
H 5 HOH H 7 2007 2007 HOH HOH . 
H 5 HOH H 8 2008 2008 HOH HOH . 
H 5 HOH H 9 2009 2009 HOH HOH . 
H 5 HOH H 10 2010 2010 HOH HOH . 
H 5 HOH H 11 2011 2011 HOH HOH . 
H 5 HOH H 12 2012 2012 HOH HOH . 
H 5 HOH H 13 2013 2013 HOH HOH . 
H 5 HOH H 14 2014 2014 HOH HOH . 
H 5 HOH H 15 2015 2015 HOH HOH . 
H 5 HOH H 16 2016 2016 HOH HOH . 
H 5 HOH H 17 2017 2017 HOH HOH . 
H 5 HOH H 18 2018 2018 HOH HOH . 
H 5 HOH H 19 2019 2019 HOH HOH . 
H 5 HOH H 20 2020 2020 HOH HOH . 
H 5 HOH H 21 2021 2021 HOH HOH . 
H 5 HOH H 22 2022 2022 HOH HOH . 
H 5 HOH H 23 2023 2023 HOH HOH . 
H 5 HOH H 24 2024 2024 HOH HOH . 
H 5 HOH H 25 2025 2025 HOH HOH . 
H 5 HOH H 26 2026 2026 HOH HOH . 
H 5 HOH H 27 2027 2027 HOH HOH . 
H 5 HOH H 28 2028 2028 HOH HOH . 
H 5 HOH H 29 2029 2029 HOH HOH . 
H 5 HOH H 30 2030 2030 HOH HOH . 
H 5 HOH H 31 2031 2031 HOH HOH . 
H 5 HOH H 32 2032 2032 HOH HOH . 
H 5 HOH H 33 2033 2033 HOH HOH . 
H 5 HOH H 34 2034 2034 HOH HOH . 
H 5 HOH H 35 2035 2035 HOH HOH . 
H 5 HOH H 36 2036 2036 HOH HOH . 
H 5 HOH H 37 2037 2037 HOH HOH . 
H 5 HOH H 38 2038 2038 HOH HOH . 
H 5 HOH H 39 2039 2039 HOH HOH . 
H 5 HOH H 40 2040 2040 HOH HOH . 
H 5 HOH H 41 2041 2041 HOH HOH . 
H 5 HOH H 42 2042 2042 HOH HOH . 
H 5 HOH H 43 2043 2043 HOH HOH . 
H 5 HOH H 44 2044 2044 HOH HOH . 
H 5 HOH H 45 2045 2045 HOH HOH . 
H 5 HOH H 46 2046 2046 HOH HOH . 
H 5 HOH H 47 2047 2047 HOH HOH . 
H 5 HOH H 48 2048 2048 HOH HOH . 
H 5 HOH H 49 2049 2049 HOH HOH . 
H 5 HOH H 50 2050 2050 HOH HOH . 
H 5 HOH H 51 2051 2051 HOH HOH . 
H 5 HOH H 52 2052 2052 HOH HOH . 
H 5 HOH H 53 2053 2053 HOH HOH . 
H 5 HOH H 54 2054 2054 HOH HOH . 
H 5 HOH H 55 2055 2055 HOH HOH . 
H 5 HOH H 56 2056 2056 HOH HOH . 
H 5 HOH H 57 2057 2057 HOH HOH . 
H 5 HOH H 58 2058 2058 HOH HOH . 
H 5 HOH H 59 2059 2059 HOH HOH . 
H 5 HOH H 60 2060 2060 HOH HOH . 
H 5 HOH H 61 2061 2061 HOH HOH . 
H 5 HOH H 62 2062 2062 HOH HOH . 
H 5 HOH H 63 2063 2063 HOH HOH . 
H 5 HOH H 64 2064 2064 HOH HOH . 
H 5 HOH H 65 2065 2065 HOH HOH . 
H 5 HOH H 66 2066 2066 HOH HOH . 
H 5 HOH H 67 2067 2067 HOH HOH . 
H 5 HOH H 68 2068 2068 HOH HOH . 
H 5 HOH H 69 2069 2069 HOH HOH . 
H 5 HOH H 70 2070 2070 HOH HOH . 
H 5 HOH H 71 2071 2071 HOH HOH . 
H 5 HOH H 72 2072 2072 HOH HOH . 
H 5 HOH H 73 2073 2073 HOH HOH . 
H 5 HOH H 74 2074 2074 HOH HOH . 
H 5 HOH H 75 2075 2075 HOH HOH . 
H 5 HOH H 76 2076 2076 HOH HOH . 
H 5 HOH H 77 2077 2077 HOH HOH . 
H 5 HOH H 78 2078 2078 HOH HOH . 
H 5 HOH H 79 2079 2079 HOH HOH . 
H 5 HOH H 80 2080 2080 HOH HOH . 
H 5 HOH H 81 2081 2081 HOH HOH . 
H 5 HOH H 82 2082 2082 HOH HOH . 
H 5 HOH H 83 2083 2083 HOH HOH . 
H 5 HOH H 84 2084 2084 HOH HOH . 
H 5 HOH H 85 2085 2085 HOH HOH . 
H 5 HOH H 86 2086 2086 HOH HOH . 
H 5 HOH H 87 2087 2087 HOH HOH . 
H 5 HOH H 88 2088 2088 HOH HOH . 
H 5 HOH H 89 2089 2089 HOH HOH . 
H 5 HOH H 90 2090 2090 HOH HOH . 
H 5 HOH H 91 2091 2091 HOH HOH . 
H 5 HOH H 92 2092 2092 HOH HOH . 
H 5 HOH H 93 2093 2093 HOH HOH . 
H 5 HOH H 94 2094 2094 HOH HOH . 
H 5 HOH H 95 2095 2095 HOH HOH . 
H 5 HOH H 96 2096 2096 HOH HOH . 
H 5 HOH H 97 2097 2097 HOH HOH . 
H 5 HOH H 98 2098 2098 HOH HOH . 
H 5 HOH H 99 2099 2099 HOH HOH . 
H 5 HOH H 100 2100 2100 HOH HOH . 
H 5 HOH H 101 2101 2101 HOH HOH . 
H 5 HOH H 102 2102 2102 HOH HOH . 
H 5 HOH H 103 2103 2103 HOH HOH . 
H 5 HOH H 104 2104 2104 HOH HOH . 
H 5 HOH H 105 2105 2105 HOH HOH . 
H 5 HOH H 106 2106 2106 HOH HOH . 
H 5 HOH H 107 2107 2107 HOH HOH . 
H 5 HOH H 108 2108 2108 HOH HOH . 
I 5 HOH P 1 2001 2001 HOH HOH . 
I 5 HOH P 2 2002 2002 HOH HOH . 
I 5 HOH P 3 2003 2003 HOH HOH . 
I 5 HOH P 4 2004 2004 HOH HOH . 
I 5 HOH P 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 A2G . . . G 4 -6.872 6.889 9.966 1 36.19 ? O5 A2G 1009 P 1 
HETATM 2 C C1 A2G . . . G 4 -6.872 6.547 8.572 1 38.44 ? C1 A2G 1009 P 1 
HETATM 3 C C2 A2G . . . G 4 -8.345 6.431 8.206 1 41.76 ? C2 A2G 1009 P 1 
HETATM 4 N N2 A2G . . . G 4 -8.568 5.839 6.891 1 42.58 ? N2 A2G 1009 P 1 
HETATM 5 C C3 A2G . . . G 4 -8.966 7.808 8.36 1 39.33 ? C3 A2G 1009 P 1 
HETATM 6 O O3 A2G . . . G 4 -10.341 7.713 8.025 1 44.1 ? O3 A2G 1009 P 1 
HETATM 7 C C4 A2G . . . G 4 -8.799 8.267 9.799 1 39.29 ? C4 A2G 1009 P 1 
HETATM 8 O O4 A2G . . . G 4 -9.469 7.397 10.721 1 40.02 ? O4 A2G 1009 P 1 
HETATM 9 C C5 A2G . . . G 4 -7.343 8.224 10.2 1 39.93 ? C5 A2G 1009 P 1 
HETATM 10 C C6 A2G . . . G 4 -7.16 8.629 11.661 1 42.74 ? C6 A2G 1009 P 1 
HETATM 11 O O6 A2G . . . G 4 -7.315 7.473 12.496 1 49.87 ? O6 A2G 1009 P 1 
HETATM 12 C C7 A2G . . . G 4 -9.236 4.686 6.75 1 43.17 ? C7 A2G 1009 P 1 
HETATM 13 O O7 A2G . . . G 4 -9.754 4.099 7.694 1 45.77 ? O7 A2G 1009 P 1 
HETATM 14 C C8 A2G . . . G 4 -9.293 4.113 5.363 1 44.23 ? C8 A2G 1009 P 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#