data_5A2L
#
_model_server_result.job_id            TztjhBn6BUaw5oZAW1e97w 
_model_server_result.datetime_utc      '2024-12-21 15:08:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3002}' 
#
_entry.id    5A2L 
#
_exptl.entry_id    5A2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.01 
_cell.angle_gamma         90 
_cell.entry_id            5A2L 
_cell.length_a            46.08 
_cell.length_b            35.19 
_cell.length_c            66.29 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 B SG CYS 4 P CYS 4 1_555 G C1 A2G . P A2G 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 113 n n 
C1 C2 EDO sing 114 n n 
C1 H11 EDO sing 115 n n 
C1 H12 EDO sing 116 n n 
O1 HO1 EDO sing 117 n n 
C2 O2 EDO sing 118 n n 
C2 H21 EDO sing 119 n n 
C2 H22 EDO sing 120 n n 
O2 HO2 EDO sing 121 n n 
#
_atom_sites.entry_id                     5A2L 
_atom_sites.fract_transf_matrix[1][1]    0.021701 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO H 1 3001 3001 EDO EDO . 
D 3 EDO H 1 3002 3002 EDO EDO . 
E 3 EDO H 1 3003 3003 EDO EDO . 
F 3 EDO H 1 3004 3004 EDO EDO . 
G 4 A2G P 1 1009 1009 A2G A2G . 
H 5 HOH H 1 2001 2001 HOH HOH . 
H 5 HOH H 2 2002 2002 HOH HOH . 
H 5 HOH H 3 2003 2003 HOH HOH . 
H 5 HOH H 4 2004 2004 HOH HOH . 
H 5 HOH H 5 2005 2005 HOH HOH . 
H 5 HOH H 6 2006 2006 HOH HOH . 
H 5 HOH H 7 2007 2007 HOH HOH . 
H 5 HOH H 8 2008 2008 HOH HOH . 
H 5 HOH H 9 2009 2009 HOH HOH . 
H 5 HOH H 10 2010 2010 HOH HOH . 
H 5 HOH H 11 2011 2011 HOH HOH . 
H 5 HOH H 12 2012 2012 HOH HOH . 
H 5 HOH H 13 2013 2013 HOH HOH . 
H 5 HOH H 14 2014 2014 HOH HOH . 
H 5 HOH H 15 2015 2015 HOH HOH . 
H 5 HOH H 16 2016 2016 HOH HOH . 
H 5 HOH H 17 2017 2017 HOH HOH . 
H 5 HOH H 18 2018 2018 HOH HOH . 
H 5 HOH H 19 2019 2019 HOH HOH . 
H 5 HOH H 20 2020 2020 HOH HOH . 
H 5 HOH H 21 2021 2021 HOH HOH . 
H 5 HOH H 22 2022 2022 HOH HOH . 
H 5 HOH H 23 2023 2023 HOH HOH . 
H 5 HOH H 24 2024 2024 HOH HOH . 
H 5 HOH H 25 2025 2025 HOH HOH . 
H 5 HOH H 26 2026 2026 HOH HOH . 
H 5 HOH H 27 2027 2027 HOH HOH . 
H 5 HOH H 28 2028 2028 HOH HOH . 
H 5 HOH H 29 2029 2029 HOH HOH . 
H 5 HOH H 30 2030 2030 HOH HOH . 
H 5 HOH H 31 2031 2031 HOH HOH . 
H 5 HOH H 32 2032 2032 HOH HOH . 
H 5 HOH H 33 2033 2033 HOH HOH . 
H 5 HOH H 34 2034 2034 HOH HOH . 
H 5 HOH H 35 2035 2035 HOH HOH . 
H 5 HOH H 36 2036 2036 HOH HOH . 
H 5 HOH H 37 2037 2037 HOH HOH . 
H 5 HOH H 38 2038 2038 HOH HOH . 
H 5 HOH H 39 2039 2039 HOH HOH . 
H 5 HOH H 40 2040 2040 HOH HOH . 
H 5 HOH H 41 2041 2041 HOH HOH . 
H 5 HOH H 42 2042 2042 HOH HOH . 
H 5 HOH H 43 2043 2043 HOH HOH . 
H 5 HOH H 44 2044 2044 HOH HOH . 
H 5 HOH H 45 2045 2045 HOH HOH . 
H 5 HOH H 46 2046 2046 HOH HOH . 
H 5 HOH H 47 2047 2047 HOH HOH . 
H 5 HOH H 48 2048 2048 HOH HOH . 
H 5 HOH H 49 2049 2049 HOH HOH . 
H 5 HOH H 50 2050 2050 HOH HOH . 
H 5 HOH H 51 2051 2051 HOH HOH . 
H 5 HOH H 52 2052 2052 HOH HOH . 
H 5 HOH H 53 2053 2053 HOH HOH . 
H 5 HOH H 54 2054 2054 HOH HOH . 
H 5 HOH H 55 2055 2055 HOH HOH . 
H 5 HOH H 56 2056 2056 HOH HOH . 
H 5 HOH H 57 2057 2057 HOH HOH . 
H 5 HOH H 58 2058 2058 HOH HOH . 
H 5 HOH H 59 2059 2059 HOH HOH . 
H 5 HOH H 60 2060 2060 HOH HOH . 
H 5 HOH H 61 2061 2061 HOH HOH . 
H 5 HOH H 62 2062 2062 HOH HOH . 
H 5 HOH H 63 2063 2063 HOH HOH . 
H 5 HOH H 64 2064 2064 HOH HOH . 
H 5 HOH H 65 2065 2065 HOH HOH . 
H 5 HOH H 66 2066 2066 HOH HOH . 
H 5 HOH H 67 2067 2067 HOH HOH . 
H 5 HOH H 68 2068 2068 HOH HOH . 
H 5 HOH H 69 2069 2069 HOH HOH . 
H 5 HOH H 70 2070 2070 HOH HOH . 
H 5 HOH H 71 2071 2071 HOH HOH . 
H 5 HOH H 72 2072 2072 HOH HOH . 
H 5 HOH H 73 2073 2073 HOH HOH . 
H 5 HOH H 74 2074 2074 HOH HOH . 
H 5 HOH H 75 2075 2075 HOH HOH . 
H 5 HOH H 76 2076 2076 HOH HOH . 
H 5 HOH H 77 2077 2077 HOH HOH . 
H 5 HOH H 78 2078 2078 HOH HOH . 
H 5 HOH H 79 2079 2079 HOH HOH . 
H 5 HOH H 80 2080 2080 HOH HOH . 
H 5 HOH H 81 2081 2081 HOH HOH . 
H 5 HOH H 82 2082 2082 HOH HOH . 
H 5 HOH H 83 2083 2083 HOH HOH . 
H 5 HOH H 84 2084 2084 HOH HOH . 
H 5 HOH H 85 2085 2085 HOH HOH . 
H 5 HOH H 86 2086 2086 HOH HOH . 
H 5 HOH H 87 2087 2087 HOH HOH . 
H 5 HOH H 88 2088 2088 HOH HOH . 
H 5 HOH H 89 2089 2089 HOH HOH . 
H 5 HOH H 90 2090 2090 HOH HOH . 
H 5 HOH H 91 2091 2091 HOH HOH . 
H 5 HOH H 92 2092 2092 HOH HOH . 
H 5 HOH H 93 2093 2093 HOH HOH . 
H 5 HOH H 94 2094 2094 HOH HOH . 
H 5 HOH H 95 2095 2095 HOH HOH . 
H 5 HOH H 96 2096 2096 HOH HOH . 
H 5 HOH H 97 2097 2097 HOH HOH . 
H 5 HOH H 98 2098 2098 HOH HOH . 
H 5 HOH H 99 2099 2099 HOH HOH . 
H 5 HOH H 100 2100 2100 HOH HOH . 
H 5 HOH H 101 2101 2101 HOH HOH . 
H 5 HOH H 102 2102 2102 HOH HOH . 
H 5 HOH H 103 2103 2103 HOH HOH . 
H 5 HOH H 104 2104 2104 HOH HOH . 
H 5 HOH H 105 2105 2105 HOH HOH . 
H 5 HOH H 106 2106 2106 HOH HOH . 
H 5 HOH H 107 2107 2107 HOH HOH . 
H 5 HOH H 108 2108 2108 HOH HOH . 
I 5 HOH P 1 2001 2001 HOH HOH . 
I 5 HOH P 2 2002 2002 HOH HOH . 
I 5 HOH P 3 2003 2003 HOH HOH . 
I 5 HOH P 4 2004 2004 HOH HOH . 
I 5 HOH P 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -5.722 -9.954 35.368 1 36.58 ? C1 EDO 3002 H 1 
HETATM 2 O O1 EDO . . . D 3 -5.223 -10.603 34.185 1 40.6 ? O1 EDO 3002 H 1 
HETATM 3 C C2 EDO . . . D 3 -6.198 -10.993 36.393 1 34.85 ? C2 EDO 3002 H 1 
HETATM 4 O O2 EDO . . . D 3 -7.142 -11.917 35.811 1 29.16 ? O2 EDO 3002 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#