data_5A3Q # _model_server_result.job_id xnJinusVA5Sg7Eg-_qRD5w _model_server_result.datetime_utc '2024-11-06 07:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 5A3Q # _exptl.entry_id 5A3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A3Q _cell.length_a 86.427 _cell.length_b 118.781 _cell.length_c 141.828 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OE1 GLN 245 A GLN 244 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 A OD1 ASP 352 A ASP 351 1_555 C V VN4 . A VN4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A OD2 ASP 352 A ASP 351 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A O THR 354 A THR 353 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 A OD1 ASN 629 A ASN 628 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 A OD1 ASP 704 A ASP 703 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 A O LEU 712 A LEU 711 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc8 A O LYS 713 A LYS 712 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc9 A O ALA 715 A ALA 714 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc10 A OE1 GLU 733 A GLU 732 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc11 A OE2 GLU 733 A GLU 732 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc12 C O2 VN4 . A VN4 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc13 C V VN4 . A VN4 1001 1_555 I O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc14 D O2B DL5 . A DL5 1002 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc15 D O1G DL5 . A DL5 1002 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc16 E MG MG . A MG 1003 1_555 I O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc17 E MG MG . A MG 1003 1_555 I O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 F MG MG . A MG 1004 1_555 I O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc19 G K K . A K 1008 1_555 I O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.4 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 365 n n C34 H341 TG1 sing 366 n n C34 H342 TG1 sing 367 n n C34 H343 TG1 sing 368 n n C11 C7 TG1 sing 369 n n C11 C12 TG1 sing 370 n n C11 O11 TG1 sing 371 n n C7 C8 TG1 sing 372 n n C7 C6 TG1 sing 373 n n C7 O6 TG1 sing 374 n n C8 C9 TG1 sing 375 n n C8 O7 TG1 sing 376 n n C8 HC8 TG1 sing 377 n n C9 C10 TG1 sing 378 n n C9 HC91 TG1 sing 379 n n C9 HC92 TG1 sing 380 n n C10 C1 TG1 sing 381 n n C10 C31 TG1 sing 382 n n C10 O9 TG1 sing 383 n n C1 C2 TG1 sing 384 n n C1 C5 TG1 sing 385 n n C1 HC1 TG1 sing 386 n n C2 O1 TG1 sing 387 n n C2 C3 TG1 sing 388 n n C2 HC2 TG1 sing 389 n n O1 C13 TG1 sing 390 n n C13 O2 TG1 doub 391 n n C13 C14 TG1 sing 392 n n C14 C15 TG1 sing 393 n n C14 H141 TG1 sing 394 n n C14 H142 TG1 sing 395 n n C15 C16 TG1 sing 396 n n C15 H151 TG1 sing 397 n n C15 H152 TG1 sing 398 n n C16 C17 TG1 sing 399 n n C16 H161 TG1 sing 400 n n C16 H162 TG1 sing 401 n n C17 C18 TG1 sing 402 n n C17 H171 TG1 sing 403 n n C17 H172 TG1 sing 404 n n C18 C19 TG1 sing 405 n n C18 H181 TG1 sing 406 n n C18 H182 TG1 sing 407 n n C19 C20 TG1 sing 408 n n C19 H191 TG1 sing 409 n n C19 H192 TG1 sing 410 n n C20 H201 TG1 sing 411 n n C20 H202 TG1 sing 412 n n C20 H203 TG1 sing 413 n n C3 O3 TG1 sing 414 n n C3 C4 TG1 sing 415 n n C3 HC3 TG1 sing 416 n n O3 C21 TG1 sing 417 n n C21 O4 TG1 doub 418 n n C21 C22 TG1 sing 419 n n C22 C23 TG1 sing 420 n n C22 C24 TG1 doub 421 z n C23 H231 TG1 sing 422 n n C23 H232 TG1 sing 423 n n C23 H233 TG1 sing 424 n n C24 C25 TG1 sing 425 n n C24 H24 TG1 sing 426 n n C25 H251 TG1 sing 427 n n C25 H252 TG1 sing 428 n n C25 H253 TG1 sing 429 n n C4 C26 TG1 sing 430 n n C4 C5 TG1 doub 431 n n C26 H261 TG1 sing 432 n n C26 H262 TG1 sing 433 n n C26 H263 TG1 sing 434 n n C5 C6 TG1 sing 435 n n C6 O5 TG1 sing 436 n n C6 HC6 TG1 sing 437 n n O5 C12 TG1 sing 438 n n C12 O12 TG1 doub 439 n n C31 H311 TG1 sing 440 n n C31 H312 TG1 sing 441 n n C31 H313 TG1 sing 442 n n O9 C32 TG1 sing 443 n n C32 O10 TG1 doub 444 n n C32 C33 TG1 sing 445 n n C33 H331 TG1 sing 446 n n C33 H332 TG1 sing 447 n n C33 H333 TG1 sing 448 n n O7 C27 TG1 sing 449 n n C27 O8 TG1 doub 450 n n C27 C28 TG1 sing 451 n n C28 C29 TG1 sing 452 n n C28 H281 TG1 sing 453 n n C28 H282 TG1 sing 454 n n C29 C30 TG1 sing 455 n n C29 H291 TG1 sing 456 n n C29 H292 TG1 sing 457 n n C30 H301 TG1 sing 458 n n C30 H302 TG1 sing 459 n n C30 H303 TG1 sing 460 n n O6 HO6 TG1 sing 461 n n O11 HO11 TG1 sing 462 n n # _atom_sites.entry_id 5A3Q _atom_sites.fract_transf_matrix[1][1] 0.01157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1000 1000 TG1 TG1 . C 3 VN4 A 1 1001 1001 VN4 VN4 . D 4 DL5 A 1 1002 1002 DL5 DL5 . E 5 MG A 1 1003 1003 MG MG . F 5 MG A 1 1004 1004 MG MG . G 6 K A 1 1008 1008 K K . H 7 CL A 1 1009 1009 CL CL . I 8 HOH A 1 2001 2001 HOH HOH . I 8 HOH A 2 2002 2002 HOH HOH . I 8 HOH A 3 2003 2003 HOH HOH . I 8 HOH A 4 2004 2004 HOH HOH . I 8 HOH A 5 2005 2005 HOH HOH . I 8 HOH A 6 2006 2006 HOH HOH . I 8 HOH A 7 2007 2007 HOH HOH . I 8 HOH A 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . B 2 0.438 28.568 -55.755 1 144.03 ? C34 TG1 1000 A 1 HETATM 2 C C11 TG1 . . . B 2 0.72 28.456 -57.251 1 145.65 ? C11 TG1 1000 A 1 HETATM 3 C C7 TG1 . . . B 2 0.274 29.659 -58.147 1 146.29 ? C7 TG1 1000 A 1 HETATM 4 C C8 TG1 . . . B 2 1.096 30.972 -58.033 1 144.07 ? C8 TG1 1000 A 1 HETATM 5 C C9 TG1 . . . B 2 0.835 32.099 -59.029 1 147.58 ? C9 TG1 1000 A 1 HETATM 6 C C10 TG1 . . . B 2 0.907 31.875 -60.564 1 149.51 ? C10 TG1 1000 A 1 HETATM 7 C C1 TG1 . . . B 2 -0.213 31.013 -61.125 1 158.06 ? C1 TG1 1000 A 1 HETATM 8 C C2 TG1 . . . B 2 -0.354 31.114 -62.673 1 152.76 ? C2 TG1 1000 A 1 HETATM 9 O O1 TG1 . . . B 2 -1.343 32.071 -63.022 1 140.33 ? O1 TG1 1000 A 1 HETATM 10 C C13 TG1 . . . B 2 -1.429 32.444 -64.336 1 141.23 ? C13 TG1 1000 A 1 HETATM 11 O O2 TG1 . . . B 2 -2.217 31.863 -65.048 1 150.79 ? O2 TG1 1000 A 1 HETATM 12 C C14 TG1 . . . B 2 -0.501 33.557 -64.763 1 149.51 ? C14 TG1 1000 A 1 HETATM 13 C C15 TG1 . . . B 2 -0.699 33.943 -66.245 1 158.2 ? C15 TG1 1000 A 1 HETATM 14 C C16 TG1 . . . B 2 -0.101 33.024 -67.327 1 157.28 ? C16 TG1 1000 A 1 HETATM 15 C C17 TG1 . . . B 2 -1.13 32.053 -67.936 1 151.9 ? C17 TG1 1000 A 1 HETATM 16 C C18 TG1 . . . B 2 -0.562 30.953 -68.839 1 147.38 ? C18 TG1 1000 A 1 HETATM 17 C C19 TG1 . . . B 2 -0.788 31.206 -70.332 1 145.17 ? C19 TG1 1000 A 1 HETATM 18 C C20 TG1 . . . B 2 -0.673 32.679 -70.671 1 147.04 ? C20 TG1 1000 A 1 HETATM 19 C C3 TG1 . . . B 2 -0.823 29.701 -63.126 1 158.44 ? C3 TG1 1000 A 1 HETATM 20 O O3 TG1 . . . B 2 -0.172 29.293 -64.317 1 166.05 ? O3 TG1 1000 A 1 HETATM 21 C C21 TG1 . . . B 2 0.884 30.002 -64.771 1 166.85 ? C21 TG1 1000 A 1 HETATM 22 O O4 TG1 . . . B 2 0.754 30.982 -65.466 1 171.54 ? O4 TG1 1000 A 1 HETATM 23 C C22 TG1 . . . B 2 2.212 29.422 -64.324 1 154.23 ? C22 TG1 1000 A 1 HETATM 24 C C23 TG1 . . . B 2 2.3 28.752 -62.946 1 150.31 ? C23 TG1 1000 A 1 HETATM 25 C C24 TG1 . . . B 2 3.357 29.724 -64.946 1 144.35 ? C24 TG1 1000 A 1 HETATM 26 C C25 TG1 . . . B 2 3.431 30.374 -66.31 1 141.16 ? C25 TG1 1000 A 1 HETATM 27 C C4 TG1 . . . B 2 -0.527 28.815 -61.947 1 156.22 ? C4 TG1 1000 A 1 HETATM 28 C C26 TG1 . . . B 2 -0.591 27.305 -62.074 1 150.91 ? C26 TG1 1000 A 1 HETATM 29 C C5 TG1 . . . B 2 -0.181 29.511 -60.853 1 158.2 ? C5 TG1 1000 A 1 HETATM 30 C C6 TG1 . . . B 2 0.223 28.88 -59.504 1 154.46 ? C6 TG1 1000 A 1 HETATM 31 O O5 TG1 . . . B 2 -0.559 27.744 -59.128 1 150.66 ? O5 TG1 1000 A 1 HETATM 32 C C12 TG1 . . . B 2 -0.124 27.325 -57.919 1 143.72 ? C12 TG1 1000 A 1 HETATM 33 O O12 TG1 . . . B 2 -0.371 26.227 -57.502 1 134.79 ? O12 TG1 1000 A 1 HETATM 34 C C31 TG1 . . . B 2 2.294 31.41 -61.023 1 144.92 ? C31 TG1 1000 A 1 HETATM 35 O O9 TG1 . . . B 2 0.784 33.167 -61.278 1 144.53 ? O9 TG1 1000 A 1 HETATM 36 C C32 TG1 . . . B 2 1.519 34.272 -61.065 1 144.09 ? C32 TG1 1000 A 1 HETATM 37 O O10 TG1 . . . B 2 2.705 34.251 -60.785 1 146.29 ? O10 TG1 1000 A 1 HETATM 38 C C33 TG1 . . . B 2 0.622 35.463 -61.26 1 142.27 ? C33 TG1 1000 A 1 HETATM 39 O O7 TG1 . . . B 2 2.533 30.714 -57.996 1 135.93 ? O7 TG1 1000 A 1 HETATM 40 C C27 TG1 . . . B 2 3.156 30.763 -56.771 1 130.24 ? C27 TG1 1000 A 1 HETATM 41 O O8 TG1 . . . B 2 2.503 30.849 -55.741 1 136.56 ? O8 TG1 1000 A 1 HETATM 42 C C28 TG1 . . . B 2 4.651 30.68 -56.881 1 125.33 ? C28 TG1 1000 A 1 HETATM 43 C C29 TG1 . . . B 2 5.149 29.381 -56.24 1 118.95 ? C29 TG1 1000 A 1 HETATM 44 C C30 TG1 . . . B 2 6.58 29.544 -55.754 1 111.43 ? C30 TG1 1000 A 1 HETATM 45 O O6 TG1 . . . B 2 -1.057 29.946 -57.813 1 146.18 ? O6 TG1 1000 A 1 HETATM 46 O O11 TG1 . . . B 2 2.068 28.185 -57.468 1 140.03 ? O11 TG1 1000 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #