data_5A3Q # _model_server_result.job_id EsVn4tEYzHvCWnQq1bVdUg _model_server_result.datetime_utc '2024-11-06 07:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 5A3Q # _exptl.entry_id 5A3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A3Q _cell.length_a 86.427 _cell.length_b 118.781 _cell.length_c 141.828 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OE1 GLN 245 A GLN 244 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 A OD1 ASP 352 A ASP 351 1_555 C V VN4 . A VN4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A OD2 ASP 352 A ASP 351 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A O THR 354 A THR 353 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 A OD1 ASN 629 A ASN 628 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 A OD1 ASP 704 A ASP 703 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 A O LEU 712 A LEU 711 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc8 A O LYS 713 A LYS 712 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc9 A O ALA 715 A ALA 714 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc10 A OE1 GLU 733 A GLU 732 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc11 A OE2 GLU 733 A GLU 732 1_555 G K K . A K 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc12 C O2 VN4 . A VN4 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc13 C V VN4 . A VN4 1001 1_555 I O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc14 D O2B DL5 . A DL5 1002 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc15 D O1G DL5 . A DL5 1002 1_555 F MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc16 E MG MG . A MG 1003 1_555 I O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc17 E MG MG . A MG 1003 1_555 I O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 F MG MG . A MG 1004 1_555 I O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc19 G K K . A K 1008 1_555 I O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.4 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5A3Q _atom_sites.fract_transf_matrix[1][1] 0.01157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1000 1000 TG1 TG1 . C 3 VN4 A 1 1001 1001 VN4 VN4 . D 4 DL5 A 1 1002 1002 DL5 DL5 . E 5 MG A 1 1003 1003 MG MG . F 5 MG A 1 1004 1004 MG MG . G 6 K A 1 1008 1008 K K . H 7 CL A 1 1009 1009 CL CL . I 8 HOH A 1 2001 2001 HOH HOH . I 8 HOH A 2 2002 2002 HOH HOH . I 8 HOH A 3 2003 2003 HOH HOH . I 8 HOH A 4 2004 2004 HOH HOH . I 8 HOH A 5 2005 2005 HOH HOH . I 8 HOH A 6 2006 2006 HOH HOH . I 8 HOH A 7 2007 2007 HOH HOH . I 8 HOH A 8 2008 2008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 21.115 _atom_site.Cartn_y 17.258 _atom_site.Cartn_z -22.187 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.63 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #