data_5A3U
#
_model_server_result.job_id            rCvmLGJMY1K7J7_qnVv8ww 
_model_server_result.datetime_utc      '2024-11-12 19:33:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a3u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1407}' 
#
_entry.id    5A3U 
#
_exptl.entry_id    5A3U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              272.22 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-(5-oxo-4-(1H-1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5A3U 
_cell.length_a            154.939 
_cell.length_b            154.939 
_cell.length_c            85.401 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A3U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        153 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 1 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 -y,-x,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 28.467 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 D MN MN . A MN 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 D MN MN . A MN 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 D MN MN . A MN 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc4 D MN MN . A MN 1420 1_555 E NAK R8J . A R8J 1421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc5 D MN MN . A MN 1420 1_555 E NAM R8J . A R8J 1421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc6 B NE2 HIS 139 B HIS 313 1_555 F MN MN . B MN 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc7 B OD1 ASP 141 B ASP 315 1_555 F MN MN . B MN 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 F MN MN . B MN 1405 1_555 G NAK R8J . B R8J 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc9 F MN MN . B MN 1405 1_555 G NAM R8J . B R8J 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc10 C OD1 ASP 141 C ASP 315 1_555 H MN MN . C MN 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc11 C NE2 HIS 200 C HIS 374 1_555 H MN MN . C MN 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc12 H MN MN . C MN 1406 1_555 I NAT R8J . C R8J 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc13 H MN MN . C MN 1406 1_555 I NAM R8J . C R8J 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc14 H MN MN . C MN 1406 1_555 I NAK R8J . C R8J 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc15 H MN MN . C MN 1406 1_555 I CAP R8J . C R8J 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
#
_chem_comp.formula           'C11 H8 N6 O3' 
_chem_comp.formula_weight    272.22 
_chem_comp.id                R8J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-(5-oxo-4-(1H-1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAN R8J doub 275 n n 
OAB CAR R8J doub 276 n n 
CAN OAC R8J sing 277 n n 
OAC HOAC R8J sing 278 n n 
CAG CAD R8J doub 279 n y 
CAD NAJ R8J sing 280 n y 
CAD HAD R8J sing 281 n n 
CAE CAO R8J doub 282 n y 
CAE CAF R8J sing 283 n y 
CAE HAE R8J sing 284 n n 
CAF CAP R8J doub 285 n y 
CAF HAF R8J sing 286 n n 
CAG NAS R8J sing 287 n y 
CAG HAG R8J sing 288 n n 
CAO CAH R8J sing 289 n y 
CAH NAK R8J doub 290 n y 
CAH HAH R8J sing 291 n n 
NAM CAI R8J sing 292 n n 
CAQ CAI R8J doub 293 n n 
CAI HAI R8J sing 294 n n 
NAL NAJ R8J doub 295 n y 
CAP NAK R8J sing 296 n y 
NAS NAL R8J sing 297 n y 
NAT NAM R8J sing 298 n n 
NAM HNAM R8J sing 299 n n 
CAN CAO R8J sing 300 n n 
CAP NAT R8J sing 301 n n 
CAR CAQ R8J sing 302 n n 
CAQ NAS R8J sing 303 n n 
NAT CAR R8J sing 304 n n 
#
_atom_sites.entry_id                     5A3U 
_atom_sites.fract_transf_matrix[1][1]    0.006454 
_atom_sites.fract_transf_matrix[1][2]    0.003726 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MN A 1 1420 1420 MN MN . 
E 3 R8J A 1 1421 1421 R8J R8J . 
F 2 MN B 1 1405 1405 MN MN . 
G 3 R8J B 1 1406 1406 R8J R8J . 
H 2 MN C 1 1406 1406 MN MN . 
I 3 R8J C 1 1407 1407 R8J R8J . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA R8J . . . I 3 -29.169 12.694 -3.789 1 121.65 ? OAA R8J 1407 C 1 
HETATM 2 O OAB R8J . . . I 3 -33.493 6.987 -3.863 1 159.42 ? OAB R8J 1407 C 1 
HETATM 3 O OAC R8J . . . I 3 -28.337 11.497 -5.389 1 113.34 ? OAC R8J 1407 C 1 
HETATM 4 C CAD R8J . . . I 3 -37.816 5.006 -4.353 1 122.68 ? CAD R8J 1407 C 1 
HETATM 5 C CAE R8J . . . I 3 -30.535 9.85 -5.408 1 153.12 ? CAE R8J 1407 C 1 
HETATM 6 C CAF R8J . . . I 3 -31.732 9.143 -5.472 1 159.67 ? CAF R8J 1407 C 1 
HETATM 7 C CAG R8J . . . I 3 -37.491 6.209 -4.783 1 128.03 ? CAG R8J 1407 C 1 
HETATM 8 C CAH R8J . . . I 3 -31.617 11.509 -4.064 1 153.98 ? CAH R8J 1407 C 1 
HETATM 9 C CAI R8J . . . I 3 -36.028 8.523 -5.361 1 160.92 ? CAI R8J 1407 C 1 
HETATM 10 N NAJ R8J . . . I 3 -36.708 4.524 -3.802 1 124.26 ? NAJ R8J 1407 C 1 
HETATM 11 N NAK R8J . . . I 3 -32.812 10.781 -4.147 1 160.37 ? NAK R8J 1407 C 1 
HETATM 12 N NAL R8J . . . I 3 -35.816 5.36 -3.896 1 129.93 ? NAL R8J 1407 C 1 
HETATM 13 N NAM R8J . . . I 3 -35.042 9.418 -5.436 1 163.61 ? NAM R8J 1407 C 1 
HETATM 14 C CAN R8J . . . I 3 -29.287 11.766 -4.621 1 124.9 ? CAN R8J 1407 C 1 
HETATM 15 C CAO R8J . . . I 3 -30.474 11.042 -4.698 1 144.12 ? CAO R8J 1407 C 1 
HETATM 16 C CAP R8J . . . I 3 -32.863 9.628 -4.827 1 162.52 ? CAP R8J 1407 C 1 
HETATM 17 C CAQ R8J . . . I 3 -35.534 7.467 -4.737 1 153.82 ? CAQ R8J 1407 C 1 
HETATM 18 C CAR R8J . . . I 3 -34.274 7.737 -4.449 1 159.65 ? CAR R8J 1407 C 1 
HETATM 19 N NAS R8J . . . I 3 -36.214 6.36 -4.461 1 137.43 ? NAS R8J 1407 C 1 
HETATM 20 N NAT R8J . . . I 3 -34.01 8.962 -4.9 1 163.16 ? NAT R8J 1407 C 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           20 
#