data_5A44 # _model_server_result.job_id 3FaUkFTda0Q9hEpb2lkDKQ _model_server_result.datetime_utc '2024-11-13 04:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1229}' # _entry.id 5A44 # _exptl.entry_id 5A44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A44 _cell.length_a 61.127 _cell.length_b 61.127 _cell.length_c 110.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 30.5635 -52.937535 0 3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -30.5635 -52.937535 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 1229 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.272 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 395 n n C1 C6 RET sing 396 n n C1 C16 RET sing 397 n n C1 C17 RET sing 398 n n C2 C3 RET sing 399 n n C2 H21 RET sing 400 n n C2 H22 RET sing 401 n n C3 C4 RET sing 402 n n C3 H31 RET sing 403 n n C3 H32 RET sing 404 n n C4 C5 RET sing 405 n n C4 H41 RET sing 406 n n C4 H42 RET sing 407 n n C5 C6 RET doub 408 n n C5 C18 RET sing 409 n n C6 C7 RET sing 410 n n C7 C8 RET doub 411 e n C7 H7 RET sing 412 n n C8 C9 RET sing 413 n n C8 H8 RET sing 414 n n C9 C10 RET doub 415 e n C9 C19 RET sing 416 n n C10 C11 RET sing 417 n n C10 H10 RET sing 418 n n C11 C12 RET doub 419 e n C11 H11 RET sing 420 n n C12 C13 RET sing 421 n n C12 H12 RET sing 422 n n C13 C14 RET doub 423 e n C13 C20 RET sing 424 n n C14 C15 RET sing 425 n n C14 H14 RET sing 426 n n C15 O1 RET doub 427 n n C15 H15 RET sing 428 n n C16 H161 RET sing 429 n n C16 H162 RET sing 430 n n C16 H163 RET sing 431 n n C17 H171 RET sing 432 n n C17 H172 RET sing 433 n n C17 H173 RET sing 434 n n C18 H181 RET sing 435 n n C18 H182 RET sing 436 n n C18 H183 RET sing 437 n n C19 H191 RET sing 438 n n C19 H192 RET sing 439 n n C19 H193 RET sing 440 n n C20 H201 RET sing 441 n n C20 H202 RET sing 442 n n C20 H203 RET sing 443 n n # _atom_sites.entry_id 5A44 _atom_sites.fract_transf_matrix[1][1] 0.016359 _atom_sites.fract_transf_matrix[1][2] 0.009445 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 1229 1229 RET RET . C 3 LI1 A 1 1230 1230 LI1 LI1 . D 3 LI1 A 1 1231 1231 LI1 LI1 . E 3 LI1 A 1 1232 1232 LI1 LI1 . F 3 LI1 A 1 1233 1233 LI1 LI1 . G 3 LI1 A 1 1234 1234 LI1 LI1 . H 3 LI1 A 1 1235 1235 LI1 LI1 . I 3 LI1 A 1 1236 1236 LI1 LI1 . J 3 LI1 A 1 1238 1238 LI1 LI1 . K 3 LI1 A 1 1239 1239 LI1 LI1 . L 4 HP6 A 1 1300 1300 HP6 HP6 . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -1.24 -17.394 -3.735 1 27.92 ? C1 RET 1229 A 1 HETATM 2 C C2 RET . . . B 2 -2.173 -17.443 -4.938 1 29.74 ? C2 RET 1229 A 1 HETATM 3 C C3 RET . . . B 2 -3.158 -16.294 -5.02 1 31.09 ? C3 RET 1229 A 1 HETATM 4 C C4 RET . . . B 2 -3.994 -16.257 -3.771 1 30.96 ? C4 RET 1229 A 1 HETATM 5 C C5 RET . . . B 2 -3.116 -16.222 -2.53 1 30.92 ? C5 RET 1229 A 1 HETATM 6 C C6 RET . . . B 2 -1.851 -16.742 -2.493 1 29.55 ? C6 RET 1229 A 1 HETATM 7 C C7 RET . . . B 2 -1.077 -16.674 -1.199 1 31.71 ? C7 RET 1229 A 1 HETATM 8 C C8 RET . . . B 2 0.148 -17.175 -0.984 1 32.91 ? C8 RET 1229 A 1 HETATM 9 C C9 RET . . . B 2 0.885 -17.068 0.293 1 34.43 ? C9 RET 1229 A 1 HETATM 10 C C10 RET . . . B 2 2.125 -17.547 0.235 1 32.34 ? C10 RET 1229 A 1 HETATM 11 C C11 RET . . . B 2 3.113 -17.548 1.312 1 34.39 ? C11 RET 1229 A 1 HETATM 12 C C12 RET . . . B 2 4.356 -17.891 0.968 1 32.03 ? C12 RET 1229 A 1 HETATM 13 C C13 RET . . . B 2 5.436 -17.996 1.946 1 29.73 ? C13 RET 1229 A 1 HETATM 14 C C14 RET . . . B 2 6.503 -18.72 1.527 1 27.45 ? C14 RET 1229 A 1 HETATM 15 C C15 RET . . . B 2 7.709 -19.03 2.283 1 27.8 ? C15 RET 1229 A 1 HETATM 16 C C16 RET . . . B 2 0.028 -16.635 -4.181 1 28.32 ? C16 RET 1229 A 1 HETATM 17 C C17 RET . . . B 2 -1.003 -18.885 -3.495 1 28.81 ? C17 RET 1229 A 1 HETATM 18 C C18 RET . . . B 2 -3.833 -15.637 -1.332 1 29.13 ? C18 RET 1229 A 1 HETATM 19 C C19 RET . . . B 2 0.294 -16.443 1.531 1 36.6 ? C19 RET 1229 A 1 HETATM 20 C C20 RET . . . B 2 5.28 -17.462 3.345 1 28.49 ? C20 RET 1229 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #