data_5A44 # _model_server_result.job_id 3rZNocq50lmtSRXASl5p8Q _model_server_result.datetime_utc '2024-11-13 04:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1230}' # _entry.id 5A44 # _exptl.entry_id 5A44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A44 _cell.length_a 61.127 _cell.length_b 61.127 _cell.length_c 110.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 30.5635 -52.937535 0 3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -30.5635 -52.937535 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 1229 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.272 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H86 O3' _chem_comp.formula_weight 639.13 _chem_comp.id LI1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LI1 sing 182 n n C1 O1 LI1 sing 183 n n C1 H11 LI1 sing 184 n n C1 H12 LI1 sing 185 n n C2 C3 LI1 sing 186 n n C2 O2 LI1 sing 187 n n C2 H2 LI1 sing 188 n n C3 O3 LI1 sing 189 n n C3 H31 LI1 sing 190 n n C3 H32 LI1 sing 191 n n O1 C11 LI1 sing 192 n n O2 C41 LI1 sing 193 n n O3 HO3 LI1 sing 194 n n C41 C42 LI1 sing 195 n n C41 H411 LI1 sing 196 n n C41 H412 LI1 sing 197 n n C42 C43 LI1 sing 198 n n C42 H421 LI1 sing 199 n n C42 H422 LI1 sing 200 n n C43 C44 LI1 sing 201 n n C43 C45 LI1 sing 202 n n C43 H43 LI1 sing 203 n n C44 H441 LI1 sing 204 n n C44 H442 LI1 sing 205 n n C44 H443 LI1 sing 206 n n C45 C46 LI1 sing 207 n n C45 H451 LI1 sing 208 n n C45 H452 LI1 sing 209 n n C46 C47 LI1 sing 210 n n C46 H461 LI1 sing 211 n n C46 H462 LI1 sing 212 n n C47 C48 LI1 sing 213 n n C47 H471 LI1 sing 214 n n C47 H472 LI1 sing 215 n n C48 C49 LI1 sing 216 n n C48 C50 LI1 sing 217 n n C48 H48 LI1 sing 218 n n C49 H491 LI1 sing 219 n n C49 H492 LI1 sing 220 n n C49 H493 LI1 sing 221 n n C50 C51 LI1 sing 222 n n C50 H501 LI1 sing 223 n n C50 H502 LI1 sing 224 n n C51 C52 LI1 sing 225 n n C51 H511 LI1 sing 226 n n C51 H512 LI1 sing 227 n n C52 C53 LI1 sing 228 n n C52 H521 LI1 sing 229 n n C52 H522 LI1 sing 230 n n C53 C55 LI1 sing 231 n n C53 H531 LI1 sing 232 n n C53 H532 LI1 sing 233 n n C55 C56 LI1 sing 234 n n C55 H551 LI1 sing 235 n n C55 H552 LI1 sing 236 n n C56 C57 LI1 sing 237 n n C56 H561 LI1 sing 238 n n C56 H562 LI1 sing 239 n n C57 C58 LI1 sing 240 n n C57 H571 LI1 sing 241 n n C57 H572 LI1 sing 242 n n C58 C59 LI1 sing 243 n n C58 C60 LI1 sing 244 n n C58 H58 LI1 sing 245 n n C59 H591 LI1 sing 246 n n C59 H592 LI1 sing 247 n n C59 H593 LI1 sing 248 n n C60 H601 LI1 sing 249 n n C60 H602 LI1 sing 250 n n C60 H603 LI1 sing 251 n n C11 C12 LI1 sing 252 n n C11 H111 LI1 sing 253 n n C11 H112 LI1 sing 254 n n C12 C13 LI1 sing 255 n n C12 H121 LI1 sing 256 n n C12 H122 LI1 sing 257 n n C13 C14 LI1 sing 258 n n C13 C15 LI1 sing 259 n n C13 H13 LI1 sing 260 n n C14 H141 LI1 sing 261 n n C14 H142 LI1 sing 262 n n C14 H143 LI1 sing 263 n n C15 C16 LI1 sing 264 n n C15 H151 LI1 sing 265 n n C15 H152 LI1 sing 266 n n C16 C17 LI1 sing 267 n n C16 H161 LI1 sing 268 n n C16 H162 LI1 sing 269 n n C17 C18 LI1 sing 270 n n C17 H171 LI1 sing 271 n n C17 H172 LI1 sing 272 n n C18 C19 LI1 sing 273 n n C18 C20 LI1 sing 274 n n C18 H18 LI1 sing 275 n n C19 H191 LI1 sing 276 n n C19 H192 LI1 sing 277 n n C19 H193 LI1 sing 278 n n C20 C21 LI1 sing 279 n n C20 H201 LI1 sing 280 n n C20 H202 LI1 sing 281 n n C21 C22 LI1 sing 282 n n C21 H211 LI1 sing 283 n n C21 H212 LI1 sing 284 n n C22 C23 LI1 sing 285 n n C22 H221 LI1 sing 286 n n C22 H222 LI1 sing 287 n n C23 C24 LI1 sing 288 n n C23 C25 LI1 sing 289 n n C23 H23 LI1 sing 290 n n C24 H241 LI1 sing 291 n n C24 H242 LI1 sing 292 n n C24 H243 LI1 sing 293 n n C25 C26 LI1 sing 294 n n C25 H251 LI1 sing 295 n n C25 H252 LI1 sing 296 n n C26 C27 LI1 sing 297 n n C26 H261 LI1 sing 298 n n C26 H262 LI1 sing 299 n n C27 C28 LI1 sing 300 n n C27 H271 LI1 sing 301 n n C27 H272 LI1 sing 302 n n C28 C29 LI1 sing 303 n n C28 C30 LI1 sing 304 n n C28 H28 LI1 sing 305 n n C29 H291 LI1 sing 306 n n C29 H292 LI1 sing 307 n n C29 H293 LI1 sing 308 n n C30 H301 LI1 sing 309 n n C30 H302 LI1 sing 310 n n C30 H303 LI1 sing 311 n n # _atom_sites.entry_id 5A44 _atom_sites.fract_transf_matrix[1][1] 0.016359 _atom_sites.fract_transf_matrix[1][2] 0.009445 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 1229 1229 RET RET . C 3 LI1 A 1 1230 1230 LI1 LI1 . D 3 LI1 A 1 1231 1231 LI1 LI1 . E 3 LI1 A 1 1232 1232 LI1 LI1 . F 3 LI1 A 1 1233 1233 LI1 LI1 . G 3 LI1 A 1 1234 1234 LI1 LI1 . H 3 LI1 A 1 1235 1235 LI1 LI1 . I 3 LI1 A 1 1236 1236 LI1 LI1 . J 3 LI1 A 1 1238 1238 LI1 LI1 . K 3 LI1 A 1 1239 1239 LI1 LI1 . L 4 HP6 A 1 1300 1300 HP6 HP6 . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C41 LI1 . . . C 3 21.245 -27.783 1.81 1 32.56 ? C41 LI1 1230 A 1 HETATM 2 C C42 LI1 . . . C 3 20.568 -29.126 1.512 1 33.73 ? C42 LI1 1230 A 1 HETATM 3 C C43 LI1 . . . C 3 19.203 -29.308 2.182 1 37.03 ? C43 LI1 1230 A 1 HETATM 4 C C45 LI1 . . . C 3 18.384 -30.459 1.568 1 42.05 ? C45 LI1 1230 A 1 HETATM 5 C C46 LI1 . . . C 3 18.488 -31.917 2.064 1 44.55 ? C46 LI1 1230 A 1 HETATM 6 C C47 LI1 . . . C 3 19.283 -32.247 3.333 1 46.32 ? C47 LI1 1230 A 1 HETATM 7 C C48 LI1 . . . C 3 18.416 -32.805 4.461 1 46.66 ? C48 LI1 1230 A 1 HETATM 8 C C50 LI1 . . . C 3 18.031 -31.676 5.419 1 49.35 ? C50 LI1 1230 A 1 HETATM 9 C C51 LI1 . . . C 3 17.255 -32.161 6.64 1 48.89 ? C51 LI1 1230 A 1 HETATM 10 C C52 LI1 . . . C 3 16.539 -30.998 7.326 1 46.99 ? C52 LI1 1230 A 1 HETATM 11 C C53 LI1 . . . C 3 16.027 -31.333 8.738 1 45.27 ? C53 LI1 1230 A 1 HETATM 12 C C55 LI1 . . . C 3 16.914 -30.685 9.804 1 46.43 ? C55 LI1 1230 A 1 HETATM 13 C C56 LI1 . . . C 3 16.251 -30.674 11.168 1 45.07 ? C56 LI1 1230 A 1 HETATM 14 C C57 LI1 . . . C 3 17.061 -29.978 12.263 1 44.58 ? C57 LI1 1230 A 1 HETATM 15 C C58 LI1 . . . C 3 16.368 -30.264 13.601 1 46 ? C58 LI1 1230 A 1 HETATM 16 C C59 LI1 . . . C 3 17.314 -30.307 14.792 1 49.59 ? C59 LI1 1230 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #