data_5A45 # _model_server_result.job_id zyhF6ZoK4fxwmggnPtro3Q _model_server_result.datetime_utc '2024-11-14 05:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5A45 # _exptl.entry_id 5A45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A45 _cell.length_a 61.127 _cell.length_b 61.127 _cell.length_c 110.313 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 30.5635 -52.937535 0 3 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -30.5635 -52.937535 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.259 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5A45 _atom_sites.fract_transf_matrix[1][1] 0.016359 _atom_sites.fract_transf_matrix[1][2] 0.009445 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RET _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id RET _pdbx_nonpoly_scheme.auth_mon_id RET _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 1.425 -17.282 3.634 1 20.8 ? C1 RET 300 A 1 HETATM 2 C C2 RET . . . B 2 2.338 -17 4.837 1 21.6 ? C2 RET 300 A 1 HETATM 3 C C3 RET . . . B 2 3.796 -16.963 4.438 1 23.79 ? C3 RET 300 A 1 HETATM 4 C C4 RET . . . B 2 4.043 -15.918 3.364 1 23.57 ? C4 RET 300 A 1 HETATM 5 C C5 RET . . . B 2 3.15 -16.14 2.176 1 22.59 ? C5 RET 300 A 1 HETATM 6 C C6 RET . . . B 2 1.901 -16.676 2.292 1 22.63 ? C6 RET 300 A 1 HETATM 7 C C7 RET . . . B 2 1.006 -16.658 1.062 1 23.75 ? C7 RET 300 A 1 HETATM 8 C C8 RET . . . B 2 -0.236 -17.149 0.931 1 21.88 ? C8 RET 300 A 1 HETATM 9 C C9 RET . . . B 2 -1.002 -17.082 -0.335 1 21.94 ? C9 RET 300 A 1 HETATM 10 C C10 RET . . . B 2 -2.219 -17.653 -0.317 1 24.52 ? C10 RET 300 A 1 HETATM 11 C C11 RET . . . B 2 -3.186 -17.674 -1.434 1 23.88 ? C11 RET 300 A 1 HETATM 12 C C12 RET . . . B 2 -4.4 -18.081 -1.108 1 22.71 ? C12 RET 300 A 1 HETATM 13 C C13 RET . . . B 2 -5.518 -18.257 -2.035 1 23.99 ? C13 RET 300 A 1 HETATM 14 C C14 RET . . . B 2 -6.504 -19 -1.501 1 22.49 ? C14 RET 300 A 1 HETATM 15 C C15 RET . . . B 2 -7.776 -19.404 -2.098 1 21.05 ? C15 RET 300 A 1 HETATM 16 C C16 RET . . . B 2 0.107 -16.685 4.109 1 21.19 ? C16 RET 300 A 1 HETATM 17 C C17 RET . . . B 2 1.294 -18.794 3.459 1 18.91 ? C17 RET 300 A 1 HETATM 18 C C18 RET . . . B 2 3.807 -15.686 0.89 1 24.62 ? C18 RET 300 A 1 HETATM 19 C C19 RET . . . B 2 -0.467 -16.424 -1.571 1 20.08 ? C19 RET 300 A 1 HETATM 20 C C20 RET . . . B 2 -5.515 -17.758 -3.455 1 26.54 ? C20 RET 300 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #