data_5A4D
#
_model_server_result.job_id            Fsl8s1I7bkBkSmU1OYFyZA 
_model_server_result.datetime_utc      '2025-09-12 00:45:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1330}' 
#
_entry.id    5A4D 
#
_exptl.entry_id    5A4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.76 
_cell.angle_gamma         90 
_cell.entry_id            5A4D 
_cell.length_a            82.16 
_cell.length_b            128.6 
_cell.length_c            150.12 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J 1 1 
B,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P 5 1 
F,Q,R 6 1 
G,S,T 7 1 
H,U,V 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 283 n n 
PA O2A NAP sing 284 n n 
PA O5B NAP sing 285 n n 
PA O3 NAP sing 286 n n 
O2A HOA2 NAP sing 287 n n 
O5B C5B NAP sing 288 n n 
C5B C4B NAP sing 289 n n 
C5B H51A NAP sing 290 n n 
C5B H52A NAP sing 291 n n 
C4B O4B NAP sing 292 n n 
C4B C3B NAP sing 293 n n 
C4B H4B NAP sing 294 n n 
O4B C1B NAP sing 295 n n 
C3B O3B NAP sing 296 n n 
C3B C2B NAP sing 297 n n 
C3B H3B NAP sing 298 n n 
O3B HO3A NAP sing 299 n n 
C2B O2B NAP sing 300 n n 
C2B C1B NAP sing 301 n n 
C2B H2B NAP sing 302 n n 
O2B P2B NAP sing 303 n n 
C1B N9A NAP sing 304 n n 
C1B H1B NAP sing 305 n n 
N9A C8A NAP sing 306 n y 
N9A C4A NAP sing 307 n y 
C8A N7A NAP doub 308 n y 
C8A H8A NAP sing 309 n n 
N7A C5A NAP sing 310 n y 
C5A C6A NAP sing 311 n y 
C5A C4A NAP doub 312 n y 
C6A N6A NAP sing 313 n n 
C6A N1A NAP doub 314 n y 
N6A H61A NAP sing 315 n n 
N6A H62A NAP sing 316 n n 
N1A C2A NAP sing 317 n y 
C2A N3A NAP doub 318 n y 
C2A H2A NAP sing 319 n n 
N3A C4A NAP sing 320 n y 
O3 PN NAP sing 321 n n 
PN O1N NAP doub 322 n n 
PN O2N NAP sing 323 n n 
PN O5D NAP sing 324 n n 
O5D C5D NAP sing 325 n n 
C5D C4D NAP sing 326 n n 
C5D H51N NAP sing 327 n n 
C5D H52N NAP sing 328 n n 
C4D O4D NAP sing 329 n n 
C4D C3D NAP sing 330 n n 
C4D H4D NAP sing 331 n n 
O4D C1D NAP sing 332 n n 
C3D O3D NAP sing 333 n n 
C3D C2D NAP sing 334 n n 
C3D H3D NAP sing 335 n n 
O3D HO3N NAP sing 336 n n 
C2D O2D NAP sing 337 n n 
C2D C1D NAP sing 338 n n 
C2D H2D NAP sing 339 n n 
O2D HO2N NAP sing 340 n n 
C1D N1N NAP sing 341 n n 
C1D H1D NAP sing 342 n n 
N1N C2N NAP sing 343 n y 
N1N C6N NAP doub 344 n y 
C2N C3N NAP doub 345 n y 
C2N H2N NAP sing 346 n n 
C3N C7N NAP sing 347 n n 
C3N C4N NAP sing 348 n y 
C7N O7N NAP doub 349 n n 
C7N N7N NAP sing 350 n n 
N7N H71N NAP sing 351 n n 
N7N H72N NAP sing 352 n n 
C4N C5N NAP doub 353 n y 
C4N H4N NAP sing 354 n n 
C5N C6N NAP sing 355 n y 
C5N H5N NAP sing 356 n n 
C6N H6N NAP sing 357 n n 
P2B O1X NAP doub 358 n n 
P2B O2X NAP sing 359 n n 
P2B O3X NAP sing 360 n n 
O2X HOP2 NAP sing 361 n n 
O3X HOP3 NAP sing 362 n n 
#
_atom_sites.entry_id                     5A4D 
_atom_sites.fract_transf_matrix[1][1]    0.012171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001659 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAP A 1 1330 1330 NAP NAP . 
J 3 KZH A 1 1331 1331 KZH KZH . 
K 2 NAP B 1 1330 1330 NAP NAP . 
L 2 NAP C 1 1330 1330 NAP NAP . 
M 3 KZH C 1 1331 1331 KZH KZH . 
N 2 NAP D 1 1330 1330 NAP NAP . 
O 3 KZH D 1 1331 1331 KZH KZH . 
P 2 NAP E 1 1330 1330 NAP NAP . 
Q 2 NAP F 1 1330 1330 NAP NAP . 
R 3 KZH F 1 1331 1331 KZH KZH . 
S 2 NAP G 1 1330 1330 NAP NAP . 
T 3 KZH G 1 1331 1331 KZH KZH . 
U 2 NAP H 1 1330 1330 NAP NAP . 
V 3 KZH H 1 1331 1331 KZH KZH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . N 2 51.021 28.142 74.407 1 41.88 ? PA NAP 1330 D 1 
HETATM 2 O O1A NAP . . . N 2 52.185 28.786 73.677 1 53.2 ? O1A NAP 1330 D 1 
HETATM 3 O O2A NAP . . . N 2 49.705 28.544 73.724 1 33.67 ? O2A NAP 1330 D 1 
HETATM 4 O O5B NAP . . . N 2 51.081 28.502 75.979 1 68.02 ? O5B NAP 1330 D 1 
HETATM 5 C C5B NAP . . . N 2 51.068 29.84 76.489 1 63.45 ? C5B NAP 1330 D 1 
HETATM 6 C C4B NAP . . . N 2 50.311 29.891 77.778 1 56.53 ? C4B NAP 1330 D 1 
HETATM 7 O O4B NAP . . . N 2 50.722 28.809 78.707 1 50.68 ? O4B NAP 1330 D 1 
HETATM 8 C C3B NAP . . . N 2 50.553 31.176 78.479 1 55.76 ? C3B NAP 1330 D 1 
HETATM 9 O O3B NAP . . . N 2 49.328 31.982 78.402 1 40.06 ? O3B NAP 1330 D 1 
HETATM 10 C C2B NAP . . . N 2 51.001 30.833 79.851 1 60.9 ? C2B NAP 1330 D 1 
HETATM 11 O O2B NAP . . . N 2 50.496 31.706 80.916 1 63.89 ? O2B NAP 1330 D 1 
HETATM 12 C C1B NAP . . . N 2 50.589 29.43 80.061 1 49.2 ? C1B NAP 1330 D 1 
HETATM 13 N N9A NAP . . . N 2 51.379 28.738 80.983 1 40.18 ? N9A NAP 1330 D 1 
HETATM 14 C C8A NAP . . . N 2 52.693 28.559 80.885 1 48.42 ? C8A NAP 1330 D 1 
HETATM 15 N N7A NAP . . . N 2 53.16 27.844 81.908 1 50.93 ? N7A NAP 1330 D 1 
HETATM 16 C C5A NAP . . . N 2 52.153 27.525 82.717 1 48.49 ? C5A NAP 1330 D 1 
HETATM 17 C C6A NAP . . . N 2 52.084 26.8 83.913 1 47.17 ? C6A NAP 1330 D 1 
HETATM 18 N N6A NAP . . . N 2 53.279 26.238 84.466 1 45.05 ? N6A NAP 1330 D 1 
HETATM 19 N N1A NAP . . . N 2 50.905 26.64 84.523 1 48.82 ? N1A NAP 1330 D 1 
HETATM 20 C C2A NAP . . . N 2 49.779 27.182 83.978 1 57.23 ? C2A NAP 1330 D 1 
HETATM 21 N N3A NAP . . . N 2 49.803 27.907 82.81 1 48.52 ? N3A NAP 1330 D 1 
HETATM 22 C C4A NAP . . . N 2 50.979 28.086 82.146 1 43.4 ? C4A NAP 1330 D 1 
HETATM 23 O O3 NAP . . . N 2 51.223 26.552 74.339 1 48.98 ? O3 NAP 1330 D 1 
HETATM 24 P PN NAP . . . N 2 50.256 25.555 73.532 1 47.71 ? PN NAP 1330 D 1 
HETATM 25 O O1N NAP . . . N 2 48.846 25.516 74.111 1 46.81 ? O1N NAP 1330 D 1 
HETATM 26 O O2N NAP . . . N 2 50.195 25.957 72.065 1 52.73 ? O2N NAP 1330 D 1 
HETATM 27 O O5D NAP . . . N 2 50.967 24.113 73.711 1 43.13 ? O5D NAP 1330 D 1 
HETATM 28 C C5D NAP . . . N 2 51.402 23.766 75.052 1 42.39 ? C5D NAP 1330 D 1 
HETATM 29 C C4D NAP . . . N 2 52.366 22.622 74.971 1 48.13 ? C4D NAP 1330 D 1 
HETATM 30 O O4D NAP . . . N 2 51.701 21.467 74.28 1 54.27 ? O4D NAP 1330 D 1 
HETATM 31 C C3D NAP . . . N 2 53.526 23.008 74.156 1 48.2 ? C3D NAP 1330 D 1 
HETATM 32 O O3D NAP . . . N 2 54.724 22.528 74.837 1 46.13 ? O3D NAP 1330 D 1 
HETATM 33 C C2D NAP . . . N 2 53.34 22.388 72.839 1 49.18 ? C2D NAP 1330 D 1 
HETATM 34 O O2D NAP . . . N 2 54.627 22.147 72.176 1 47.98 ? O2D NAP 1330 D 1 
HETATM 35 C C1D NAP . . . N 2 52.598 21.152 73.113 1 52.65 ? C1D NAP 1330 D 1 
HETATM 36 N N1N NAP . . . N 2 51.818 20.673 72.044 1 53.8 ? N1N NAP 1330 D 1 
HETATM 37 C C2N NAP . . . N 2 51.884 19.324 71.724 1 49.16 ? C2N NAP 1330 D 1 
HETATM 38 C C3N NAP . . . N 2 51.157 18.748 70.669 1 41.76 ? C3N NAP 1330 D 1 
HETATM 39 C C7N NAP . . . N 2 51.244 17.207 70.395 1 48.25 ? C7N NAP 1330 D 1 
HETATM 40 O O7N NAP . . . N 2 50.777 16.719 69.366 1 47.61 ? O7N NAP 1330 D 1 
HETATM 41 N N7N NAP . . . N 2 51.838 16.331 71.382 1 41.42 ? N7N NAP 1330 D 1 
HETATM 42 C C4N NAP . . . N 2 50.356 19.576 69.922 1 46.34 ? C4N NAP 1330 D 1 
HETATM 43 C C5N NAP . . . N 2 50.288 20.933 70.225 1 57.56 ? C5N NAP 1330 D 1 
HETATM 44 C C6N NAP . . . N 2 51.024 21.499 71.289 1 59.88 ? C6N NAP 1330 D 1 
HETATM 45 P P2B NAP . . . N 2 51.466 32.838 81.491 1 68.46 ? P2B NAP 1330 D 1 
HETATM 46 O O1X NAP . . . N 2 51.846 33.787 80.36 1 55.91 ? O1X NAP 1330 D 1 
HETATM 47 O O2X NAP . . . N 2 50.705 33.577 82.57 1 78.83 ? O2X NAP 1330 D 1 
HETATM 48 O O3X NAP . . . N 2 52.76 32.262 82.045 1 53.34 ? O3X NAP 1330 D 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#