data_5A50 # _model_server_result.job_id L9TNGvmrc90ZijJNC9DvMg _model_server_result.datetime_utc '2025-02-26 07:50:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5A50 # _exptl.entry_id 5A50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A50 _cell.length_a 35.737 _cell.length_b 89.15 _cell.length_c 112.475 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 33 A ARG 50 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc2 A OD1 ASP 34 A ASP 51 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A OD1 ASP 34 A ASP 51 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc4 A OD2 ASP 34 A ASP 51 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 A OD2 ASP 39 A ASP 56 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc6 A OD2 ASP 85 A ASP 102 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 A OD1 ASP 85 A ASP 102 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc8 A OD2 ASP 85 A ASP 102 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc9 A O HIS 86 A HIS 103 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc10 A OD1 ASP 87 A ASP 104 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc11 A OD2 ASP 87 A ASP 104 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 A OD1 ASP 87 A ASP 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc13 A OD2 ASP 93 A ASP 110 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc14 D CA CA . A CA 202 1_555 J O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 B O ARG 33 B ARG 50 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc16 B OD1 ASP 34 B ASP 51 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc17 B OD2 ASP 34 B ASP 51 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc18 B OD1 ASP 34 B ASP 51 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc19 B OD2 ASP 39 B ASP 56 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc20 B OD1 ASP 85 B ASP 102 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc21 B OD2 ASP 85 B ASP 102 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc22 B OD2 ASP 85 B ASP 102 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc23 B O HIS 86 B HIS 103 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc24 B ND1 HIS 86 B HIS 103 1_555 H ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc25 B OD1 ASP 87 B ASP 104 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc26 B OD1 ASP 87 B ASP 104 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc27 B OD2 ASP 87 B ASP 104 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc28 B OD2 ASP 92 B ASP 109 1_555 H ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc29 B OD2 ASP 93 B ASP 110 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc30 B OD2 ASP 114 B ASP 131 1_555 H ZN ZN . B ZN 204 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc31 E CA CA . B CA 201 1_555 K O HOH . B HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc32 F CA CA . B CA 202 1_555 K O HOH . B HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc33 H ZN ZN . B ZN 204 1_555 I O1 PC . B PC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C5 H15 N O4 P 1' _chem_comp.formula_weight 184.151 _chem_comp.id PC _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PC doub 237 n n P1 O3 PC sing 238 n n P1 O4 PC sing 239 n n P1 O2 PC sing 240 n n O3 HO3 PC sing 241 n n O4 HO4 PC sing 242 n n O2 C1 PC sing 243 n n C1 C2 PC sing 244 n n C1 H11 PC sing 245 n n C1 H12 PC sing 246 n n C2 N1 PC sing 247 n n C2 H21 PC sing 248 n n C2 H22 PC sing 249 n n N1 C3 PC sing 250 n n N1 C4 PC sing 251 n n N1 C5 PC sing 252 n n C3 H31 PC sing 253 n n C3 H32 PC sing 254 n n C3 H33 PC sing 255 n n C4 H41 PC sing 256 n n C4 H42 PC sing 257 n n C4 H43 PC sing 258 n n C5 H51 PC sing 259 n n C5 H52 PC sing 260 n n C5 H53 PC sing 261 n n # _atom_sites.entry_id 5A50 _atom_sites.fract_transf_matrix[1][1] 0.027982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 1195 CA CA . D 3 CA A 1 202 1196 CA CA . E 3 CA B 1 201 1195 CA CA . F 3 CA B 1 202 1196 CA CA . G 4 PC B 1 203 1197 PC PC . H 5 ZN B 1 204 1198 ZN ZN . I 4 PC B 1 205 1199 PC PC . J 6 HOH A 1 301 2006 HOH HOH . J 6 HOH A 2 302 2063 HOH HOH . J 6 HOH A 3 303 2062 HOH HOH . J 6 HOH A 4 304 2014 HOH HOH . J 6 HOH A 5 305 2027 HOH HOH . J 6 HOH A 6 306 2032 HOH HOH . J 6 HOH A 7 307 2050 HOH HOH . J 6 HOH A 8 308 2045 HOH HOH . J 6 HOH A 9 309 2016 HOH HOH . J 6 HOH A 10 310 2052 HOH HOH . J 6 HOH A 11 311 2003 HOH HOH . J 6 HOH A 12 312 2034 HOH HOH . J 6 HOH A 13 313 2008 HOH HOH . J 6 HOH A 14 314 2031 HOH HOH . J 6 HOH A 15 315 2009 HOH HOH . J 6 HOH A 16 316 2012 HOH HOH . J 6 HOH A 17 317 2040 HOH HOH . J 6 HOH A 18 318 2056 HOH HOH . J 6 HOH A 19 319 2054 HOH HOH . J 6 HOH A 20 320 2039 HOH HOH . J 6 HOH A 21 321 2021 HOH HOH . J 6 HOH A 22 322 2047 HOH HOH . J 6 HOH A 23 323 2007 HOH HOH . J 6 HOH A 24 324 2061 HOH HOH . J 6 HOH A 25 325 2015 HOH HOH . J 6 HOH A 26 326 2001 HOH HOH . J 6 HOH A 27 327 2038 HOH HOH . J 6 HOH A 28 328 2025 HOH HOH . J 6 HOH A 29 329 2049 HOH HOH . J 6 HOH A 30 330 2053 HOH HOH . J 6 HOH A 31 331 2051 HOH HOH . J 6 HOH A 32 332 2022 HOH HOH . J 6 HOH A 33 333 2043 HOH HOH . J 6 HOH A 34 334 2037 HOH HOH . J 6 HOH A 35 335 2058 HOH HOH . J 6 HOH A 36 336 2033 HOH HOH . J 6 HOH A 37 337 2048 HOH HOH . J 6 HOH A 38 338 2053 HOH HOH . J 6 HOH A 39 339 2064 HOH HOH . J 6 HOH A 40 340 2011 HOH HOH . J 6 HOH A 41 341 2026 HOH HOH . J 6 HOH A 42 342 2024 HOH HOH . J 6 HOH A 43 343 2042 HOH HOH . J 6 HOH A 44 344 2020 HOH HOH . J 6 HOH A 45 345 2036 HOH HOH . J 6 HOH A 46 346 2046 HOH HOH . J 6 HOH A 47 347 2029 HOH HOH . J 6 HOH A 48 348 2017 HOH HOH . J 6 HOH A 49 349 2004 HOH HOH . J 6 HOH A 50 350 2055 HOH HOH . J 6 HOH A 51 351 2028 HOH HOH . J 6 HOH A 52 352 2035 HOH HOH . J 6 HOH A 53 353 2010 HOH HOH . J 6 HOH A 54 354 2051 HOH HOH . J 6 HOH A 55 355 2023 HOH HOH . J 6 HOH A 56 356 2041 HOH HOH . J 6 HOH A 57 357 2044 HOH HOH . J 6 HOH A 58 358 2057 HOH HOH . J 6 HOH A 59 359 2019 HOH HOH . J 6 HOH A 60 360 2060 HOH HOH . J 6 HOH A 61 361 2059 HOH HOH . J 6 HOH A 62 362 2018 HOH HOH . J 6 HOH A 63 363 2005 HOH HOH . J 6 HOH A 64 364 2002 HOH HOH . K 6 HOH B 1 301 2017 HOH HOH . K 6 HOH B 2 302 2024 HOH HOH . K 6 HOH B 3 303 2032 HOH HOH . K 6 HOH B 4 304 2019 HOH HOH . K 6 HOH B 5 305 2015 HOH HOH . K 6 HOH B 6 306 2001 HOH HOH . K 6 HOH B 7 307 2021 HOH HOH . K 6 HOH B 8 308 2030 HOH HOH . K 6 HOH B 9 309 2063 HOH HOH . K 6 HOH B 10 310 2029 HOH HOH . K 6 HOH B 11 311 2031 HOH HOH . K 6 HOH B 12 312 2073 HOH HOH . K 6 HOH B 13 313 2036 HOH HOH . K 6 HOH B 14 314 2002 HOH HOH . K 6 HOH B 15 315 2044 HOH HOH . K 6 HOH B 16 316 2023 HOH HOH . K 6 HOH B 17 317 2059 HOH HOH . K 6 HOH B 18 318 2039 HOH HOH . K 6 HOH B 19 319 2042 HOH HOH . K 6 HOH B 20 320 2068 HOH HOH . K 6 HOH B 21 321 2038 HOH HOH . K 6 HOH B 22 322 2020 HOH HOH . K 6 HOH B 23 323 2003 HOH HOH . K 6 HOH B 24 324 2066 HOH HOH . K 6 HOH B 25 325 2061 HOH HOH . K 6 HOH B 26 326 2055 HOH HOH . K 6 HOH B 27 327 2011 HOH HOH . K 6 HOH B 28 328 2062 HOH HOH . K 6 HOH B 29 329 2071 HOH HOH . K 6 HOH B 30 330 2046 HOH HOH . K 6 HOH B 31 331 2022 HOH HOH . K 6 HOH B 32 332 2069 HOH HOH . K 6 HOH B 33 333 2057 HOH HOH . K 6 HOH B 34 334 2060 HOH HOH . K 6 HOH B 35 335 2052 HOH HOH . K 6 HOH B 36 336 2006 HOH HOH . K 6 HOH B 37 337 2018 HOH HOH . K 6 HOH B 38 338 2075 HOH HOH . K 6 HOH B 39 339 2012 HOH HOH . K 6 HOH B 40 340 2027 HOH HOH . K 6 HOH B 41 341 2025 HOH HOH . K 6 HOH B 42 342 2076 HOH HOH . K 6 HOH B 43 343 2007 HOH HOH . K 6 HOH B 44 344 2043 HOH HOH . K 6 HOH B 45 345 2064 HOH HOH . K 6 HOH B 46 346 2037 HOH HOH . K 6 HOH B 47 347 2008 HOH HOH . K 6 HOH B 48 348 2045 HOH HOH . K 6 HOH B 49 349 2077 HOH HOH . K 6 HOH B 50 350 2004 HOH HOH . K 6 HOH B 51 351 2048 HOH HOH . K 6 HOH B 52 352 2014 HOH HOH . K 6 HOH B 53 353 2056 HOH HOH . K 6 HOH B 54 354 2026 HOH HOH . K 6 HOH B 55 355 2034 HOH HOH . K 6 HOH B 56 356 2033 HOH HOH . K 6 HOH B 57 357 2070 HOH HOH . K 6 HOH B 58 358 2050 HOH HOH . K 6 HOH B 59 359 2030 HOH HOH . K 6 HOH B 60 360 2049 HOH HOH . K 6 HOH B 61 361 2065 HOH HOH . K 6 HOH B 62 362 2067 HOH HOH . K 6 HOH B 63 363 2047 HOH HOH . K 6 HOH B 64 364 2058 HOH HOH . K 6 HOH B 65 365 2074 HOH HOH . K 6 HOH B 66 366 2028 HOH HOH . K 6 HOH B 67 367 2041 HOH HOH . K 6 HOH B 68 368 2016 HOH HOH . K 6 HOH B 69 369 2072 HOH HOH . K 6 HOH B 70 370 2054 HOH HOH . K 6 HOH B 71 371 2013 HOH HOH . K 6 HOH B 72 372 2040 HOH HOH . K 6 HOH B 73 373 2035 HOH HOH . K 6 HOH B 74 374 2009 HOH HOH . K 6 HOH B 75 375 2010 HOH HOH . K 6 HOH B 76 376 2005 HOH HOH . K 6 HOH B 77 377 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PC . . . G 4 -4.056 19.074 -33.167 1 38.42 ? P1 PC 203 B 1 HETATM 2 O O1 PC . . . G 4 -4.934 18.183 -34.012 1 38.71 ? O1 PC 203 B 1 HETATM 3 O O3 PC . . . G 4 -4.608 19.154 -31.76 1 39.26 ? O3 PC 203 B 1 HETATM 4 O O4 PC . . . G 4 -2.645 18.549 -33.128 1 37.72 ? O4 PC 203 B 1 HETATM 5 O O2 PC . . . G 4 -3.962 20.496 -33.837 1 47.08 ? O2 PC 203 B 1 HETATM 6 C C1 PC . . . G 4 -3.173 20.658 -34.986 1 38.05 ? C1 PC 203 B 1 HETATM 7 C C2 PC . . . G 4 -3.668 21.602 -36.053 1 36.17 ? C2 PC 203 B 1 HETATM 8 N N1 PC . . . G 4 -2.754 22.609 -36.59 1 43.6 ? N1 PC 203 B 1 HETATM 9 C C3 PC . . . G 4 -3.31 23.334 -37.733 1 29.08 ? C3 PC 203 B 1 HETATM 10 C C4 PC . . . G 4 -2.434 23.595 -35.549 1 34.89 ? C4 PC 203 B 1 HETATM 11 C C5 PC . . . G 4 -1.568 21.885 -37.013 1 29.49 ? C5 PC 203 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #