data_5A5I
#
_model_server_result.job_id            68wL8x5pqeSqGAFH7hxviw 
_model_server_result.datetime_utc      '2024-12-03 11:22:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a5i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1494}' 
#
_entry.id    5A5I 
#
_exptl.entry_id    5A5I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5A5I 
_cell.length_a            92.217 
_cell.length_b            92.217 
_cell.length_c            170.414 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A5I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 418 A CYS 435 1_555 C FE HEM . A HEM 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc2 C FE HEM . A HEM 1494 1_555 D O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5A5I 
_atom_sites.fract_transf_matrix[1][1]    0.010844 
_atom_sites.fract_transf_matrix[1][2]    0.006261 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XI1 A 1 1493 1493 XI1 XI1 . 
C 3 HEM A 1 1494 1494 HEM HEM . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 63.924 7.289 -3.729 1 18.72 ? CHA HEM 1494 A 1 
HETATM 2 C CHB HEM . . . C 3 65.465 11.8 -3.048 1 19.08 ? CHB HEM 1494 A 1 
HETATM 3 C CHC HEM . . . C 3 65.479 10.877 1.734 1 19.85 ? CHC HEM 1494 A 1 
HETATM 4 C CHD HEM . . . C 3 63.636 6.402 0.966 1 18.16 ? CHD HEM 1494 A 1 
HETATM 5 C C1A HEM . . . C 3 64.37 8.563 -3.959 1 18.62 ? C1A HEM 1494 A 1 
HETATM 6 C C2A HEM . . . C 3 64.458 9.146 -5.251 1 18.4 ? C2A HEM 1494 A 1 
HETATM 7 C C3A HEM . . . C 3 64.845 10.444 -5.085 1 17.78 ? C3A HEM 1494 A 1 
HETATM 8 C C4A HEM . . . C 3 65 10.656 -3.675 1 17.01 ? C4A HEM 1494 A 1 
HETATM 9 C CMA HEM . . . C 3 65.1 11.457 -6.157 1 15.77 ? CMA HEM 1494 A 1 
HETATM 10 C CAA HEM . . . C 3 64.181 8.515 -6.607 1 22.73 ? CAA HEM 1494 A 1 
HETATM 11 C CBA HEM . . . C 3 62.781 8.784 -7.136 1 21.34 ? CBA HEM 1494 A 1 
HETATM 12 C CGA HEM . . . C 3 62.674 8.382 -8.626 1 24.09 ? CGA HEM 1494 A 1 
HETATM 13 O O1A HEM . . . C 3 62.373 9.187 -9.545 1 25 ? O1A HEM 1494 A 1 
HETATM 14 O O2A HEM . . . C 3 63.012 7.254 -8.989 1 23.86 ? O2A HEM 1494 A 1 
HETATM 15 C C1B HEM . . . C 3 65.649 11.918 -1.627 1 15.49 ? C1B HEM 1494 A 1 
HETATM 16 C C2B HEM . . . C 3 66.165 13.06 -0.972 1 16.83 ? C2B HEM 1494 A 1 
HETATM 17 C C3B HEM . . . C 3 66.164 12.831 0.359 1 18.03 ? C3B HEM 1494 A 1 
HETATM 18 C C4B HEM . . . C 3 65.667 11.465 0.498 1 17.89 ? C4B HEM 1494 A 1 
HETATM 19 C CMB HEM . . . C 3 66.623 14.371 -1.583 1 19.2 ? CMB HEM 1494 A 1 
HETATM 20 C CAB HEM . . . C 3 66.622 13.631 1.578 1 19.99 ? CAB HEM 1494 A 1 
HETATM 21 C CBB HEM . . . C 3 67.228 14.79 1.5 1 21.52 ? CBB HEM 1494 A 1 
HETATM 22 C C1C HEM . . . C 3 64.93 9.587 1.949 1 21.31 ? C1C HEM 1494 A 1 
HETATM 23 C C2C HEM . . . C 3 64.599 9.044 3.2 1 20.25 ? C2C HEM 1494 A 1 
HETATM 24 C C3C HEM . . . C 3 64.112 7.754 2.987 1 21.48 ? C3C HEM 1494 A 1 
HETATM 25 C C4C HEM . . . C 3 64.049 7.543 1.583 1 19.38 ? C4C HEM 1494 A 1 
HETATM 26 C CMC HEM . . . C 3 64.799 9.696 4.549 1 20.56 ? CMC HEM 1494 A 1 
HETATM 27 C CAC HEM . . . C 3 63.602 6.992 4.149 1 21.27 ? CAC HEM 1494 A 1 
HETATM 28 C CBC HEM . . . C 3 62.577 6.256 4.162 1 23.84 ? CBC HEM 1494 A 1 
HETATM 29 C C1D HEM . . . C 3 63.671 6.315 -0.413 1 19.72 ? C1D HEM 1494 A 1 
HETATM 30 C C2D HEM . . . C 3 63.25 5.076 -1.113 1 21.19 ? C2D HEM 1494 A 1 
HETATM 31 C C3D HEM . . . C 3 63.284 5.332 -2.429 1 19.62 ? C3D HEM 1494 A 1 
HETATM 32 C C4D HEM . . . C 3 63.739 6.755 -2.504 1 18.17 ? C4D HEM 1494 A 1 
HETATM 33 C CMD HEM . . . C 3 62.792 3.772 -0.51 1 20.18 ? CMD HEM 1494 A 1 
HETATM 34 C CAD HEM . . . C 3 62.922 4.329 -3.515 1 19.46 ? CAD HEM 1494 A 1 
HETATM 35 C CBD HEM . . . C 3 61.506 4.549 -3.979 1 18.92 ? CBD HEM 1494 A 1 
HETATM 36 C CGD HEM . . . C 3 60.907 3.735 -5.116 1 22.72 ? CGD HEM 1494 A 1 
HETATM 37 O O1D HEM . . . C 3 61.618 3.174 -5.904 1 22.07 ? O1D HEM 1494 A 1 
HETATM 38 O O2D HEM . . . C 3 59.65 3.594 -5.252 1 24.17 ? O2D HEM 1494 A 1 
HETATM 39 N NA HEM . . . C 3 64.638 9.507 -2.967 1 16.47 ? NA HEM 1494 A 1 
HETATM 40 N NB HEM . . . C 3 65.332 11.005 -0.717 1 16.54 ? NB HEM 1494 A 1 
HETATM 41 N NC HEM . . . C 3 64.528 8.698 0.988 1 18.49 ? NC HEM 1494 A 1 
HETATM 42 N ND HEM . . . C 3 63.875 7.358 -1.284 1 19.29 ? ND HEM 1494 A 1 
HETATM 43 FE FE HEM . . . C 3 64.524 9.12 -0.993 1 17.93 ? FE HEM 1494 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#