data_5A5R # _model_server_result.job_id SlnL4L0HThRvGf5lXEqb9w _model_server_result.datetime_utc '2024-11-28 10:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2111}' # _entry.id 5A5R # _exptl.entry_id 5A5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(5-methoxypyridin-3-yl)-3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A5R _cell.length_a 79.53 _cell.length_b 79.53 _cell.length_c 137.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 39.765 68.875 22.931667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N5 O2' _chem_comp.formula_weight 365.429 _chem_comp.id NP8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(5-methoxypyridin-3-yl)-3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O05 NP8 sing 246 n n O05 C06 NP8 sing 247 n n C06 C07 NP8 sing 248 n y C06 C13 NP8 doub 249 n y C07 N09 NP8 doub 250 n y N09 C10 NP8 sing 251 n y C10 C12 NP8 doub 252 n y C12 C13 NP8 sing 253 n y C12 C15 NP8 sing 254 n n C15 C16 NP8 sing 255 n y C15 C50 NP8 doub 256 n y C16 N18 NP8 doub 257 n y N18 C19 NP8 sing 258 n y C19 N20 NP8 sing 259 n n C19 C38 NP8 doub 260 n y N20 C22 NP8 sing 261 n n C22 C24 NP8 sing 262 n n C22 C35 NP8 sing 263 n n C24 C27 NP8 sing 264 n n C27 N30 NP8 sing 265 n n N30 C32 NP8 sing 266 n n C32 C35 NP8 sing 267 n n C38 N39 NP8 sing 268 n n C38 C50 NP8 sing 269 n y N39 C41 NP8 sing 270 n n C41 O42 NP8 doub 271 n n C41 C43 NP8 sing 272 n n C43 C44 NP8 sing 273 n n C43 C48 NP8 doub 274 n n C48 C50 NP8 sing 275 n n C01 H011 NP8 sing 276 n n C01 H012 NP8 sing 277 n n C01 H013 NP8 sing 278 n n C07 H07 NP8 sing 279 n n C13 H13 NP8 sing 280 n n C10 H10 NP8 sing 281 n n C16 H16 NP8 sing 282 n n N20 H20 NP8 sing 283 n n C22 H22 NP8 sing 284 n n C24 H241 NP8 sing 285 n n C24 H242 NP8 sing 286 n n C35 H351 NP8 sing 287 n n C35 H352 NP8 sing 288 n n C27 H271 NP8 sing 289 n n C27 H272 NP8 sing 290 n n N30 H30 NP8 sing 291 n n C32 H321 NP8 sing 292 n n C32 H322 NP8 sing 293 n n N39 H39 NP8 sing 294 n n C44 H441 NP8 sing 295 n n C44 H442 NP8 sing 296 n n C44 H443 NP8 sing 297 n n C48 H48 NP8 sing 298 n n # _atom_sites.entry_id 5A5R _atom_sites.fract_transf_matrix[1][1] 0.012574 _atom_sites.fract_transf_matrix[1][2] 0.00726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2109 2109 EDO EDO . C 2 EDO A 1 2110 2110 EDO EDO . D 3 NP8 A 1 2111 2111 NP8 NP8 . E 4 SO4 A 1 2112 2112 SO4 SO4 . F 4 SO4 A 1 2113 2113 SO4 SO4 . G 4 SO4 A 1 2114 2114 SO4 SO4 . H 5 HOH A 1 3001 3001 HOH HOH . H 5 HOH A 2 3002 3002 HOH HOH . H 5 HOH A 3 3003 3003 HOH HOH . H 5 HOH A 4 3004 3004 HOH HOH . H 5 HOH A 5 3005 3005 HOH HOH . H 5 HOH A 6 3006 3006 HOH HOH . H 5 HOH A 7 3007 3007 HOH HOH . H 5 HOH A 8 3008 3008 HOH HOH . H 5 HOH A 9 3009 3009 HOH HOH . H 5 HOH A 10 3010 3010 HOH HOH . H 5 HOH A 11 3011 3011 HOH HOH . H 5 HOH A 12 3012 3012 HOH HOH . H 5 HOH A 13 3013 3013 HOH HOH . H 5 HOH A 14 3014 3014 HOH HOH . H 5 HOH A 15 3015 3015 HOH HOH . H 5 HOH A 16 3016 3016 HOH HOH . H 5 HOH A 17 3017 3017 HOH HOH . H 5 HOH A 18 3018 3018 HOH HOH . H 5 HOH A 19 3019 3019 HOH HOH . H 5 HOH A 20 3020 3020 HOH HOH . H 5 HOH A 21 3021 3021 HOH HOH . H 5 HOH A 22 3022 3022 HOH HOH . H 5 HOH A 23 3023 3023 HOH HOH . H 5 HOH A 24 3024 3024 HOH HOH . H 5 HOH A 25 3025 3025 HOH HOH . H 5 HOH A 26 3026 3026 HOH HOH . H 5 HOH A 27 3027 3027 HOH HOH . H 5 HOH A 28 3028 3028 HOH HOH . H 5 HOH A 29 3029 3029 HOH HOH . H 5 HOH A 30 3030 3030 HOH HOH . H 5 HOH A 31 3031 3031 HOH HOH . H 5 HOH A 32 3032 3032 HOH HOH . H 5 HOH A 33 3033 3033 HOH HOH . H 5 HOH A 34 3034 3034 HOH HOH . H 5 HOH A 35 3035 3035 HOH HOH . H 5 HOH A 36 3036 3036 HOH HOH . H 5 HOH A 37 3037 3037 HOH HOH . H 5 HOH A 38 3038 3038 HOH HOH . H 5 HOH A 39 3039 3039 HOH HOH . H 5 HOH A 40 3040 3040 HOH HOH . H 5 HOH A 41 3041 3041 HOH HOH . H 5 HOH A 42 3042 3042 HOH HOH . H 5 HOH A 43 3043 3043 HOH HOH . H 5 HOH A 44 3044 3044 HOH HOH . H 5 HOH A 45 3045 3045 HOH HOH . H 5 HOH A 46 3046 3046 HOH HOH . H 5 HOH A 47 3047 3047 HOH HOH . H 5 HOH A 48 3048 3048 HOH HOH . H 5 HOH A 49 3049 3049 HOH HOH . H 5 HOH A 50 3050 3050 HOH HOH . H 5 HOH A 51 3051 3051 HOH HOH . H 5 HOH A 52 3052 3052 HOH HOH . H 5 HOH A 53 3053 3053 HOH HOH . H 5 HOH A 54 3054 3054 HOH HOH . H 5 HOH A 55 3055 3055 HOH HOH . H 5 HOH A 56 3056 3056 HOH HOH . H 5 HOH A 57 3057 3057 HOH HOH . H 5 HOH A 58 3058 3058 HOH HOH . H 5 HOH A 59 3059 3059 HOH HOH . H 5 HOH A 60 3060 3060 HOH HOH . H 5 HOH A 61 3061 3061 HOH HOH . H 5 HOH A 62 3062 3062 HOH HOH . H 5 HOH A 63 3063 3063 HOH HOH . H 5 HOH A 64 3064 3064 HOH HOH . H 5 HOH A 65 3065 3065 HOH HOH . H 5 HOH A 66 3066 3066 HOH HOH . H 5 HOH A 67 3067 3067 HOH HOH . H 5 HOH A 68 3068 3068 HOH HOH . H 5 HOH A 69 3069 3069 HOH HOH . H 5 HOH A 70 3070 3070 HOH HOH . H 5 HOH A 71 3071 3071 HOH HOH . H 5 HOH A 72 3072 3072 HOH HOH . H 5 HOH A 73 3073 3073 HOH HOH . H 5 HOH A 74 3074 3074 HOH HOH . H 5 HOH A 75 3075 3075 HOH HOH . H 5 HOH A 76 3076 3076 HOH HOH . H 5 HOH A 77 3077 3077 HOH HOH . H 5 HOH A 78 3078 3078 HOH HOH . H 5 HOH A 79 3079 3079 HOH HOH . H 5 HOH A 80 3080 3080 HOH HOH . H 5 HOH A 81 3081 3081 HOH HOH . H 5 HOH A 82 3082 3082 HOH HOH . H 5 HOH A 83 3083 3083 HOH HOH . H 5 HOH A 84 3084 3084 HOH HOH . H 5 HOH A 85 3085 3085 HOH HOH . H 5 HOH A 86 3086 3086 HOH HOH . H 5 HOH A 87 3087 3087 HOH HOH . H 5 HOH A 88 3088 3088 HOH HOH . H 5 HOH A 89 3089 3089 HOH HOH . H 5 HOH A 90 3090 3090 HOH HOH . H 5 HOH A 91 3091 3091 HOH HOH . H 5 HOH A 92 3092 3092 HOH HOH . H 5 HOH A 93 3093 3093 HOH HOH . H 5 HOH A 94 3094 3094 HOH HOH . H 5 HOH A 95 3095 3095 HOH HOH . H 5 HOH A 96 3096 3096 HOH HOH . H 5 HOH A 97 3097 3097 HOH HOH . H 5 HOH A 98 3098 3098 HOH HOH . H 5 HOH A 99 3099 3099 HOH HOH . H 5 HOH A 100 3100 3100 HOH HOH . H 5 HOH A 101 3101 3101 HOH HOH . H 5 HOH A 102 3102 3102 HOH HOH . H 5 HOH A 103 3103 3103 HOH HOH . H 5 HOH A 104 3104 3104 HOH HOH . H 5 HOH A 105 3105 3105 HOH HOH . H 5 HOH A 106 3106 3106 HOH HOH . H 5 HOH A 107 3107 3107 HOH HOH . H 5 HOH A 108 3108 3108 HOH HOH . H 5 HOH A 109 3109 3109 HOH HOH . H 5 HOH A 110 3110 3110 HOH HOH . H 5 HOH A 111 3111 3111 HOH HOH . H 5 HOH A 112 3112 3112 HOH HOH . H 5 HOH A 113 3113 3113 HOH HOH . H 5 HOH A 114 3114 3114 HOH HOH . H 5 HOH A 115 3115 3115 HOH HOH . H 5 HOH A 116 3116 3116 HOH HOH . H 5 HOH A 117 3117 3117 HOH HOH . H 5 HOH A 118 3118 3118 HOH HOH . H 5 HOH A 119 3119 3119 HOH HOH . H 5 HOH A 120 3120 3120 HOH HOH . H 5 HOH A 121 3121 3121 HOH HOH . H 5 HOH A 122 3122 3122 HOH HOH . H 5 HOH A 123 3123 3123 HOH HOH . H 5 HOH A 124 3124 3124 HOH HOH . H 5 HOH A 125 3125 3125 HOH HOH . H 5 HOH A 126 3126 3126 HOH HOH . H 5 HOH A 127 3127 3127 HOH HOH . H 5 HOH A 128 3128 3128 HOH HOH . H 5 HOH A 129 3129 3129 HOH HOH . H 5 HOH A 130 3130 3130 HOH HOH . H 5 HOH A 131 3131 3131 HOH HOH . H 5 HOH A 132 3132 3132 HOH HOH . H 5 HOH A 133 3133 3133 HOH HOH . H 5 HOH A 134 3134 3134 HOH HOH . H 5 HOH A 135 3135 3135 HOH HOH . H 5 HOH A 136 3136 3136 HOH HOH . H 5 HOH A 137 3137 3137 HOH HOH . H 5 HOH A 138 3138 3138 HOH HOH . H 5 HOH A 139 3139 3139 HOH HOH . H 5 HOH A 140 3140 3140 HOH HOH . H 5 HOH A 141 3141 3141 HOH HOH . H 5 HOH A 142 3142 3142 HOH HOH . H 5 HOH A 143 3143 3143 HOH HOH . H 5 HOH A 144 3144 3144 HOH HOH . H 5 HOH A 145 3145 3145 HOH HOH . H 5 HOH A 146 3146 3146 HOH HOH . H 5 HOH A 147 3147 3147 HOH HOH . H 5 HOH A 148 3148 3148 HOH HOH . H 5 HOH A 149 3149 3149 HOH HOH . H 5 HOH A 150 3150 3150 HOH HOH . H 5 HOH A 151 3151 3151 HOH HOH . H 5 HOH A 152 3152 3152 HOH HOH . H 5 HOH A 153 3153 3153 HOH HOH . H 5 HOH A 154 3154 3154 HOH HOH . H 5 HOH A 155 3155 3155 HOH HOH . H 5 HOH A 156 3156 3156 HOH HOH . H 5 HOH A 157 3157 3157 HOH HOH . H 5 HOH A 158 3158 3158 HOH HOH . H 5 HOH A 159 3159 3159 HOH HOH . H 5 HOH A 160 3160 3160 HOH HOH . H 5 HOH A 161 3161 3161 HOH HOH . H 5 HOH A 162 3162 3162 HOH HOH . H 5 HOH A 163 3163 3163 HOH HOH . H 5 HOH A 164 3164 3164 HOH HOH . H 5 HOH A 165 3165 3165 HOH HOH . H 5 HOH A 166 3166 3166 HOH HOH . H 5 HOH A 167 3167 3167 HOH HOH . H 5 HOH A 168 3168 3168 HOH HOH . H 5 HOH A 169 3169 3169 HOH HOH . H 5 HOH A 170 3170 3170 HOH HOH . H 5 HOH A 171 3171 3171 HOH HOH . H 5 HOH A 172 3172 3172 HOH HOH . H 5 HOH A 173 3173 3173 HOH HOH . H 5 HOH A 174 3174 3174 HOH HOH . H 5 HOH A 175 3175 3175 HOH HOH . H 5 HOH A 176 3176 3176 HOH HOH . H 5 HOH A 177 3177 3177 HOH HOH . H 5 HOH A 178 3178 3178 HOH HOH . H 5 HOH A 179 3179 3179 HOH HOH . H 5 HOH A 180 3180 3180 HOH HOH . H 5 HOH A 181 3181 3181 HOH HOH . H 5 HOH A 182 3182 3182 HOH HOH . H 5 HOH A 183 3183 3183 HOH HOH . H 5 HOH A 184 3184 3184 HOH HOH . H 5 HOH A 185 3185 3185 HOH HOH . H 5 HOH A 186 3186 3186 HOH HOH . H 5 HOH A 187 3187 3187 HOH HOH . H 5 HOH A 188 3188 3188 HOH HOH . H 5 HOH A 189 3189 3189 HOH HOH . H 5 HOH A 190 3190 3190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NP8 . . . D 3 -29.216 50.9 6.502 1 57.27 ? C01 NP8 2111 A 1 HETATM 2 O O05 NP8 . . . D 3 -29.499 49.748 7.295 1 55.67 ? O05 NP8 2111 A 1 HETATM 3 C C06 NP8 . . . D 3 -28.614 49.421 8.297 1 50.13 ? C06 NP8 2111 A 1 HETATM 4 C C07 NP8 . . . D 3 -27.516 50.193 8.64 1 48.42 ? C07 NP8 2111 A 1 HETATM 5 N N09 NP8 . . . D 3 -26.672 49.849 9.619 1 46.2 ? N09 NP8 2111 A 1 HETATM 6 C C10 NP8 . . . D 3 -26.916 48.714 10.284 1 45.68 ? C10 NP8 2111 A 1 HETATM 7 C C12 NP8 . . . D 3 -27.973 47.854 10.006 1 43.92 ? C12 NP8 2111 A 1 HETATM 8 C C13 NP8 . . . D 3 -28.846 48.246 8.995 1 46.94 ? C13 NP8 2111 A 1 HETATM 9 C C15 NP8 . . . D 3 -28.19 46.614 10.806 1 42.65 ? C15 NP8 2111 A 1 HETATM 10 C C16 NP8 . . . D 3 -29.404 46.394 11.432 1 40.75 ? C16 NP8 2111 A 1 HETATM 11 N N18 NP8 . . . D 3 -29.698 45.337 12.201 1 41.03 ? N18 NP8 2111 A 1 HETATM 12 C C19 NP8 . . . D 3 -28.765 44.391 12.425 1 41.12 ? C19 NP8 2111 A 1 HETATM 13 N N20 NP8 . . . D 3 -29.119 43.346 13.203 1 44.78 ? N20 NP8 2111 A 1 HETATM 14 C C22 NP8 . . . D 3 -30.383 43.254 13.931 1 48.72 ? C22 NP8 2111 A 1 HETATM 15 C C24 NP8 . . . D 3 -31.33 42.309 13.211 1 51.84 ? C24 NP8 2111 A 1 HETATM 16 C C27 NP8 . . . D 3 -32.576 42.034 14.024 1 50.79 ? C27 NP8 2111 A 1 HETATM 17 N N30 NP8 . . . D 3 -32.206 41.494 15.337 1 48.67 ? N30 NP8 2111 A 1 HETATM 18 C C32 NP8 . . . D 3 -31.409 42.465 16.097 1 52.24 ? C32 NP8 2111 A 1 HETATM 19 C C35 NP8 . . . D 3 -30.129 42.781 15.351 1 49.71 ? C35 NP8 2111 A 1 HETATM 20 C C38 NP8 . . . D 3 -27.485 44.551 11.819 1 39.63 ? C38 NP8 2111 A 1 HETATM 21 N N39 NP8 . . . D 3 -26.519 43.586 12.037 1 38.73 ? N39 NP8 2111 A 1 HETATM 22 C C41 NP8 . . . D 3 -25.265 43.61 11.531 1 35.93 ? C41 NP8 2111 A 1 HETATM 23 O O42 NP8 . . . D 3 -24.496 42.688 11.801 1 35.07 ? O42 NP8 2111 A 1 HETATM 24 C C43 NP8 . . . D 3 -24.928 44.749 10.688 1 36.94 ? C43 NP8 2111 A 1 HETATM 25 C C44 NP8 . . . D 3 -23.55 44.829 10.093 1 37.64 ? C44 NP8 2111 A 1 HETATM 26 C C48 NP8 . . . D 3 -25.859 45.711 10.456 1 39.31 ? C48 NP8 2111 A 1 HETATM 27 C C50 NP8 . . . D 3 -27.185 45.656 11.021 1 39.43 ? C50 NP8 2111 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #