data_5A5S # _model_server_result.job_id UoUJDI9ifBLO4HIsu4S1Vw _model_server_result.datetime_utc '2024-11-16 20:25:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1170}' # _entry.id 5A5S # _exptl.entry_id 5A5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(5-methoxypyridin-3-yl)-3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A5S _cell.length_a 39.39 _cell.length_b 49.39 _cell.length_c 59.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N5 O2' _chem_comp.formula_weight 365.429 _chem_comp.id NP8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(5-methoxypyridin-3-yl)-3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O05 NP8 sing 246 n n O05 C06 NP8 sing 247 n n C06 C07 NP8 sing 248 n y C06 C13 NP8 doub 249 n y C07 N09 NP8 doub 250 n y N09 C10 NP8 sing 251 n y C10 C12 NP8 doub 252 n y C12 C13 NP8 sing 253 n y C12 C15 NP8 sing 254 n n C15 C16 NP8 sing 255 n y C15 C50 NP8 doub 256 n y C16 N18 NP8 doub 257 n y N18 C19 NP8 sing 258 n y C19 N20 NP8 sing 259 n n C19 C38 NP8 doub 260 n y N20 C22 NP8 sing 261 n n C22 C24 NP8 sing 262 n n C22 C35 NP8 sing 263 n n C24 C27 NP8 sing 264 n n C27 N30 NP8 sing 265 n n N30 C32 NP8 sing 266 n n C32 C35 NP8 sing 267 n n C38 N39 NP8 sing 268 n n C38 C50 NP8 sing 269 n y N39 C41 NP8 sing 270 n n C41 O42 NP8 doub 271 n n C41 C43 NP8 sing 272 n n C43 C44 NP8 sing 273 n n C43 C48 NP8 doub 274 n n C48 C50 NP8 sing 275 n n C01 H011 NP8 sing 276 n n C01 H012 NP8 sing 277 n n C01 H013 NP8 sing 278 n n C07 H07 NP8 sing 279 n n C13 H13 NP8 sing 280 n n C10 H10 NP8 sing 281 n n C16 H16 NP8 sing 282 n n N20 H20 NP8 sing 283 n n C22 H22 NP8 sing 284 n n C24 H241 NP8 sing 285 n n C24 H242 NP8 sing 286 n n C35 H351 NP8 sing 287 n n C35 H352 NP8 sing 288 n n C27 H271 NP8 sing 289 n n C27 H272 NP8 sing 290 n n N30 H30 NP8 sing 291 n n C32 H321 NP8 sing 292 n n C32 H322 NP8 sing 293 n n N39 H39 NP8 sing 294 n n C44 H441 NP8 sing 295 n n C44 H442 NP8 sing 296 n n C44 H443 NP8 sing 297 n n C48 H48 NP8 sing 298 n n # _atom_sites.entry_id 5A5S _atom_sites.fract_transf_matrix[1][1] 0.025387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1169 1169 EDO EDO . C 3 NP8 A 1 1170 1170 NP8 NP8 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NP8 . . . C 3 -16.61 -3.821 8.863 1 9.78 ? C01 NP8 1170 A 1 HETATM 2 O O05 NP8 . . . C 3 -16.289 -5.211 8.769 1 9.4 ? O05 NP8 1170 A 1 HETATM 3 C C06 NP8 . . . C 3 -15.967 -5.714 7.535 1 9.59 ? C06 NP8 1170 A 1 HETATM 4 C C07 NP8 . . . C 3 -15.631 -4.903 6.464 1 9.66 ? C07 NP8 1170 A 1 HETATM 5 N N09 NP8 . . . C 3 -15.314 -5.394 5.262 1 10.09 ? N09 NP8 1170 A 1 HETATM 6 C C10 NP8 . . . C 3 -15.32 -6.723 5.108 1 9.83 ? C10 NP8 1170 A 1 HETATM 7 C C12 NP8 . . . C 3 -15.633 -7.629 6.116 1 9.65 ? C12 NP8 1170 A 1 HETATM 8 C C13 NP8 . . . C 3 -15.97 -7.089 7.355 1 9.66 ? C13 NP8 1170 A 1 HETATM 9 C C15 NP8 . . . C 3 -15.63 -9.096 5.844 1 9.54 ? C15 NP8 1170 A 1 HETATM 10 C C16 NP8 . . . C 3 -16.332 -9.593 4.756 1 9.74 ? C16 NP8 1170 A 1 HETATM 11 N N18 NP8 . . . C 3 -16.399 -10.882 4.388 1 10.02 ? N18 NP8 1170 A 1 HETATM 12 C C19 NP8 . . . C 3 -15.72 -11.808 5.089 1 10.05 ? C19 NP8 1170 A 1 HETATM 13 N N20 NP8 . . . C 3 -15.819 -13.092 4.68 1 10.6 ? N20 NP8 1170 A 1 HETATM 14 C C22 NP8 . . . C 3 -16.38 -13.51 3.396 1 11.53 ? C22 NP8 1170 A 1 HETATM 15 C C24 NP8 . . . C 3 -15.489 -13.079 2.245 1 11.96 ? C24 NP8 1170 A 1 HETATM 16 C C27 NP8 . . . C 3 -16.06 -13.593 0.94 1 12.35 ? C27 NP8 1170 A 1 HETATM 17 N N30 NP8 . . . C 3 -16.162 -15.059 0.98 1 12.73 ? N30 NP8 1170 A 1 HETATM 18 C C32 NP8 . . . C 3 -17.07 -15.502 2.047 1 12.45 ? C32 NP8 1170 A 1 HETATM 19 C C35 NP8 . . . C 3 -16.568 -15.015 3.386 1 12.03 ? C35 NP8 1170 A 1 HETATM 20 C C38 NP8 . . . C 3 -14.971 -11.374 6.212 1 9.52 ? C38 NP8 1170 A 1 HETATM 21 N N39 NP8 . . . C 3 -14.274 -12.311 6.957 1 9.21 ? N39 NP8 1170 A 1 HETATM 22 C C41 NP8 . . . C 3 -13.513 -12.07 8.047 1 9.08 ? C41 NP8 1170 A 1 HETATM 23 O O42 NP8 . . . C 3 -12.94 -12.993 8.625 1 8.76 ? O42 NP8 1170 A 1 HETATM 24 C C43 NP8 . . . C 3 -13.45 -10.679 8.449 1 9.07 ? C43 NP8 1170 A 1 HETATM 25 C C44 NP8 . . . C 3 -12.622 -10.309 9.648 1 9.07 ? C44 NP8 1170 A 1 HETATM 26 C C48 NP8 . . . C 3 -14.099 -9.706 7.775 1 9.14 ? C48 NP8 1170 A 1 HETATM 27 C C50 NP8 . . . C 3 -14.899 -10.021 6.613 1 9.35 ? C50 NP8 1170 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #