data_5A5V
#
_model_server_result.job_id            tYZ0oQse2xAXes4OV-Rg1g 
_model_server_result.datetime_utc      '2024-10-15 15:29:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a5v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    5A5V 
#
_exptl.entry_id    5A5V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.414 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-hexane-1,4-diylbis(2,3-dihydroxybenzamide)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A5V 
_cell.length_a            61.37 
_cell.length_b            66.08 
_cell.length_c            68.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A5V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 206 A HIS 227 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 A OH TYR 267 A TYR 288 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc3 B FE FE . A FE 400 1_555 C O26 PXJ . A PXJ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc4 B FE FE . A FE 400 1_555 C O27 PXJ . A PXJ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc5 B FE FE . A FE 400 1_555 C O28 PXJ . A PXJ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc6 B FE FE . A FE 400 1_555 C O29 PXJ . A PXJ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'C20 H24 N2 O6' 
_chem_comp.formula_weight    388.414 
_chem_comp.id                PXJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-hexane-1,4-diylbis(2,3-dihydroxybenzamide)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PXJ doub 264 n y 
C1 C6 PXJ sing 265 n y 
C2 C3 PXJ sing 266 n y 
C2 O27 PXJ sing 267 n n 
C3 C4 PXJ doub 268 n y 
C3 O26 PXJ sing 269 n n 
C4 C5 PXJ sing 270 n y 
C4 C8 PXJ sing 271 n n 
C5 C6 PXJ doub 272 n y 
C8 O9 PXJ doub 273 n n 
C8 N10 PXJ sing 274 n n 
N10 C11 PXJ sing 275 n n 
C11 C12 PXJ sing 276 n n 
C12 C13 PXJ sing 277 n n 
C13 C14 PXJ sing 278 n n 
C14 C15 PXJ sing 279 n n 
C15 C16 PXJ sing 280 n n 
C16 N17 PXJ sing 281 n n 
N17 C18 PXJ sing 282 n n 
C18 O19 PXJ doub 283 n n 
C18 C20 PXJ sing 284 n n 
C20 C21 PXJ doub 285 n y 
C20 C25 PXJ sing 286 n y 
C21 C22 PXJ sing 287 n y 
C21 O28 PXJ sing 288 n n 
C22 C23 PXJ doub 289 n y 
C22 O29 PXJ sing 290 n n 
C23 C24 PXJ sing 291 n y 
C24 C25 PXJ doub 292 n y 
C1 H1 PXJ sing 293 n n 
C5 H5 PXJ sing 294 n n 
C6 H6 PXJ sing 295 n n 
N10 HN10 PXJ sing 296 n n 
C11 H11 PXJ sing 297 n n 
C11 H11A PXJ sing 298 n n 
C12 H12 PXJ sing 299 n n 
C12 H12A PXJ sing 300 n n 
C13 H13 PXJ sing 301 n n 
C13 H13A PXJ sing 302 n n 
C14 H14 PXJ sing 303 n n 
C14 H14A PXJ sing 304 n n 
C15 H15 PXJ sing 305 n n 
C15 H15A PXJ sing 306 n n 
C16 H16 PXJ sing 307 n n 
C16 H16A PXJ sing 308 n n 
N17 HN17 PXJ sing 309 n n 
C23 H23 PXJ sing 310 n n 
C24 H24 PXJ sing 311 n n 
C25 H25 PXJ sing 312 n n 
O26 HO26 PXJ sing 313 n n 
O27 HO27 PXJ sing 314 n n 
O28 HO28 PXJ sing 315 n n 
O29 HO29 PXJ sing 316 n n 
#
_atom_sites.entry_id                     5A5V 
_atom_sites.fract_transf_matrix[1][1]    0.016295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015133 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 400 400 FE FE . 
C 3 PXJ A 1 500 500 PXJ PXJ . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PXJ . . . C 3 -8.553 7.22 2.791 1 18.8 ? C1 PXJ 500 A 1 
HETATM 2 C C2 PXJ . . . C 3 -8.592 7.497 1.42 1 17.92 ? C2 PXJ 500 A 1 
HETATM 3 C C3 PXJ . . . C 3 -9.731 7.986 0.876 1 17.94 ? C3 PXJ 500 A 1 
HETATM 4 C C4 PXJ . . . C 3 -10.869 8.242 1.674 1 19.29 ? C4 PXJ 500 A 1 
HETATM 5 C C5 PXJ . . . C 3 -10.816 8.001 3.047 1 19.77 ? C5 PXJ 500 A 1 
HETATM 6 C C6 PXJ . . . C 3 -9.653 7.468 3.608 1 18.51 ? C6 PXJ 500 A 1 
HETATM 7 C C8 PXJ . . . C 3 -12.086 8.878 1.071 1 21.98 ? C8 PXJ 500 A 1 
HETATM 8 O O9 PXJ . . . C 3 -13.105 9.069 1.713 1 20.89 ? O9 PXJ 500 A 1 
HETATM 9 N N10 PXJ . . . C 3 -11.955 9.335 -0.177 1 22.2 ? N10 PXJ 500 A 1 
HETATM 10 C C11 PXJ . . . C 3 -13.072 9.899 -0.897 1 24.36 ? C11 PXJ 500 A 1 
HETATM 11 C C12 PXJ . . . C 3 -12.741 10.865 -2.019 1 26.14 ? C12 PXJ 500 A 1 
HETATM 12 C C13 PXJ . . . C 3 -11.255 11.055 -2.263 1 28.4 ? C13 PXJ 500 A 1 
HETATM 13 C C14 PXJ . . . C 3 -10.836 12.485 -2.524 1 27.13 ? C14 PXJ 500 A 1 
HETATM 14 C C15 PXJ . . . C 3 -9.867 12.932 -1.461 1 26.01 ? C15 PXJ 500 A 1 
HETATM 15 C C16 PXJ . . . C 3 -8.516 13.289 -2.017 1 22.83 ? C16 PXJ 500 A 1 
HETATM 16 N N17 PXJ . . . C 3 -7.668 12.118 -1.941 1 20.35 ? N17 PXJ 500 A 1 
HETATM 17 C C18 PXJ . . . C 3 -6.377 12.146 -2.253 1 19.09 ? C18 PXJ 500 A 1 
HETATM 18 O O19 PXJ . . . C 3 -5.869 13.192 -2.618 1 18.09 ? O19 PXJ 500 A 1 
HETATM 19 C C20 PXJ . . . C 3 -5.542 10.877 -2.188 1 17.46 ? C20 PXJ 500 A 1 
HETATM 20 C C21 PXJ . . . C 3 -6.105 9.617 -1.923 1 16.48 ? C21 PXJ 500 A 1 
HETATM 21 C C22 PXJ . . . C 3 -5.323 8.478 -1.888 1 17.21 ? C22 PXJ 500 A 1 
HETATM 22 C C23 PXJ . . . C 3 -3.951 8.59 -2.118 1 18.09 ? C23 PXJ 500 A 1 
HETATM 23 C C24 PXJ . . . C 3 -3.374 9.844 -2.384 1 18.06 ? C24 PXJ 500 A 1 
HETATM 24 C C25 PXJ . . . C 3 -4.173 10.98 -2.407 1 17.56 ? C25 PXJ 500 A 1 
HETATM 25 O O26 PXJ . . . C 3 -9.682 8.192 -0.461 1 16.59 ? O26 PXJ 500 A 1 
HETATM 26 O O27 PXJ . . . C 3 -7.54 7.299 0.578 1 16.85 ? O27 PXJ 500 A 1 
HETATM 27 O O28 PXJ . . . C 3 -7.432 9.427 -1.711 1 15.71 ? O28 PXJ 500 A 1 
HETATM 28 O O29 PXJ . . . C 3 -5.9 7.264 -1.661 1 15.76 ? O29 PXJ 500 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#