data_5A5Z # _model_server_result.job_id npYmtBAyKycq7luACMKWtA _model_server_result.datetime_utc '2024-10-19 02:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 5A5Z # _exptl.entry_id 5A5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TIOPRONIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A5Z _cell.length_a 108.047 _cell.length_b 108.047 _cell.length_c 92.571 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 D ZN ZN . A ZN 303 1_555 E S01 WJZ . A WJZ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 B NE2 HIS 93 C HIS 120 1_555 F ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 B ND1 HIS 95 C HIS 122 1_555 F ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 B OD2 ASP 97 C ASP 124 1_555 G ZN ZN . C ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc9 B NE2 HIS 162 C HIS 189 1_555 F ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 B SG CYS 181 C CYS 208 1_555 G ZN ZN . C ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc11 G ZN ZN . C ZN 303 1_555 H S01 WJZ . C WJZ 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'C5 H9 N O3 S' _chem_comp.formula_weight 163.195 _chem_comp.id WJZ _chem_comp.mon_nstd_flag . _chem_comp.name TIOPRONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THIOLA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 WJZ sing 376 n n C01 H01 WJZ sing 377 n n C01 H01A WJZ sing 378 n n C01 H01B WJZ sing 379 n n N01 C03 WJZ sing 380 n n N01 C04 WJZ sing 381 n n N01 HN01 WJZ sing 382 n n C05 O01 WJZ sing 383 n n O01 HO01 WJZ sing 384 n n C02 S01 WJZ sing 385 n n S01 HS01 WJZ sing 386 n n C03 C02 WJZ sing 387 n n C02 H02 WJZ sing 388 n n O02 C05 WJZ doub 389 n n O03 C03 WJZ doub 390 n n C05 C04 WJZ sing 391 n n C04 H04 WJZ sing 392 n n C04 H04A WJZ sing 393 n n # _atom_sites.entry_id 5A5Z _atom_sites.fract_transf_matrix[1][1] 0.009255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 302 302 ZN ZN . D 2 ZN A 1 303 303 ZN ZN . E 3 WJZ A 1 304 304 WJZ WJZ . F 2 ZN C 1 302 302 ZN ZN . G 2 ZN C 1 303 303 ZN ZN . H 3 WJZ C 1 304 304 WJZ WJZ . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . J 4 HOH C 1 2001 2001 HOH HOH . J 4 HOH C 2 2002 2002 HOH HOH . J 4 HOH C 3 2003 2003 HOH HOH . J 4 HOH C 4 2004 2004 HOH HOH . J 4 HOH C 5 2005 2005 HOH HOH . J 4 HOH C 6 2006 2006 HOH HOH . J 4 HOH C 7 2007 2007 HOH HOH . J 4 HOH C 8 2008 2008 HOH HOH . J 4 HOH C 9 2009 2009 HOH HOH . J 4 HOH C 10 2010 2010 HOH HOH . J 4 HOH C 11 2011 2011 HOH HOH . J 4 HOH C 12 2012 2012 HOH HOH . J 4 HOH C 13 2013 2013 HOH HOH . J 4 HOH C 14 2014 2014 HOH HOH . J 4 HOH C 15 2015 2015 HOH HOH . J 4 HOH C 16 2016 2016 HOH HOH . J 4 HOH C 17 2017 2017 HOH HOH . J 4 HOH C 18 2018 2018 HOH HOH . J 4 HOH C 19 2019 2019 HOH HOH . J 4 HOH C 20 2020 2020 HOH HOH . J 4 HOH C 21 2021 2021 HOH HOH . J 4 HOH C 22 2022 2022 HOH HOH . J 4 HOH C 23 2023 2023 HOH HOH . J 4 HOH C 24 2024 2024 HOH HOH . J 4 HOH C 25 2025 2025 HOH HOH . J 4 HOH C 26 2026 2026 HOH HOH . J 4 HOH C 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WJZ . . . H 3 5.573 44.37 22.511 0.5 69.43 ? C01 WJZ 304 C 1 HETATM 2 N N01 WJZ . . . H 3 5.114 41.574 20.387 0.5 63.35 ? N01 WJZ 304 C 1 HETATM 3 O O01 WJZ . . . H 3 5.712 39.675 18.368 0.5 53.27 ? O01 WJZ 304 C 1 HETATM 4 S S01 WJZ . . . H 3 7.45 42.787 21.425 0.5 125.09 ? S01 WJZ 304 C 1 HETATM 5 C C02 WJZ . . . H 3 5.952 42.913 22.365 0.5 69.03 ? C02 WJZ 304 C 1 HETATM 6 O O02 WJZ . . . H 3 4.084 40.648 17.294 0.5 53.97 ? O02 WJZ 304 C 1 HETATM 7 C C03 WJZ . . . H 3 4.847 42.172 21.645 0.5 64.4 ? C03 WJZ 304 C 1 HETATM 8 O O03 WJZ . . . H 3 3.741 42.091 22.142 0.5 63 ? O03 WJZ 304 C 1 HETATM 9 C C04 WJZ . . . H 3 4.096 40.872 19.686 0.5 57.93 ? C04 WJZ 304 C 1 HETATM 10 C C05 WJZ . . . H 3 4.661 40.369 18.377 0.5 55.31 ? C05 WJZ 304 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #