data_5A64
#
_model_server_result.job_id            pS_Zuv2FmK4iYys1049vzw 
_model_server_result.datetime_utc      '2024-10-27 04:31:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1000}' 
#
_entry.id    5A64 
#
_exptl.entry_id    5A64 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.294 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Thiamine Triphosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.04 
_cell.angle_gamma         90 
_cell.entry_id            5A64 
_cell.length_a            103.181 
_cell.length_b            93.578 
_cell.length_c            70.775 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,K 1 1 
B,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C12 H20 N4 O10 P3 S 1' 
_chem_comp.formula_weight    505.294 
_chem_comp.id                V4E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Thiamine Triphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 V4E sing 390 n n 
C02 C03 V4E doub 391 n y 
C02 N21 V4E sing 392 n y 
C03 C04 V4E sing 393 n n 
C03 S19 V4E sing 394 n y 
C04 C05 V4E sing 395 n n 
C05 O06 V4E sing 396 n n 
O06 P07 V4E sing 397 n n 
P07 O08 V4E doub 398 n n 
P07 O09 V4E sing 399 n n 
P07 O10 V4E sing 400 n n 
O10 P11 V4E sing 401 n n 
P11 O12 V4E sing 402 n n 
P11 O13 V4E doub 403 n n 
P11 O14 V4E sing 404 n n 
O14 P15 V4E sing 405 n n 
P15 O16 V4E doub 406 n n 
P15 O17 V4E sing 407 n n 
P15 O18 V4E sing 408 n n 
S19 C20 V4E sing 409 n y 
C20 N21 V4E doub 410 n y 
N21 C22 V4E sing 411 n n 
C22 C23 V4E sing 412 n n 
C23 C24 V4E sing 413 n y 
C23 C30 V4E doub 414 n y 
C24 N25 V4E sing 415 n n 
C24 N26 V4E doub 416 n y 
N26 C27 V4E sing 417 n y 
C27 C28 V4E sing 418 n n 
C27 N29 V4E doub 419 n y 
N29 C30 V4E sing 420 n y 
C01 H011 V4E sing 421 n n 
C01 H012 V4E sing 422 n n 
C01 H013 V4E sing 423 n n 
C04 H041 V4E sing 424 n n 
C04 H042 V4E sing 425 n n 
C05 H051 V4E sing 426 n n 
C05 H052 V4E sing 427 n n 
O09 H09 V4E sing 428 n n 
O12 H12 V4E sing 429 n n 
O17 H17 V4E sing 430 n n 
O18 H18 V4E sing 431 n n 
C20 H20 V4E sing 432 n n 
C22 H221 V4E sing 433 n n 
C22 H222 V4E sing 434 n n 
C30 H30 V4E sing 435 n n 
N25 H251 V4E sing 436 n n 
N25 H252 V4E sing 437 n n 
C28 H281 V4E sing 438 n n 
C28 H282 V4E sing 439 n n 
C28 H283 V4E sing 440 n n 
#
_atom_sites.entry_id                     5A64 
_atom_sites.fract_transf_matrix[1][1]    0.009692 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000515 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 V4E A 1 1000 1000 V4E V4E . 
D 3 EDO A 1 1216 1216 EDO EDO . 
E 3 EDO A 1 1217 1217 EDO EDO . 
F 3 EDO A 1 1218 1218 EDO EDO . 
G 3 EDO A 1 1219 1219 EDO EDO . 
H 4 PGE A 1 1220 1220 PGE PGE . 
I 4 PGE A 1 1221 1221 PGE PGE . 
J 2 V4E B 1 1000 1000 V4E V4E . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
K 5 HOH A 3 2003 2003 HOH HOH . 
K 5 HOH A 4 2004 2004 HOH HOH . 
K 5 HOH A 5 2005 2005 HOH HOH . 
K 5 HOH A 6 2006 2006 HOH HOH . 
K 5 HOH A 7 2007 2007 HOH HOH . 
K 5 HOH A 8 2008 2008 HOH HOH . 
K 5 HOH A 9 2009 2009 HOH HOH . 
K 5 HOH A 10 2010 2010 HOH HOH . 
K 5 HOH A 11 2011 2011 HOH HOH . 
K 5 HOH A 12 2012 2012 HOH HOH . 
K 5 HOH A 13 2013 2013 HOH HOH . 
K 5 HOH A 14 2014 2014 HOH HOH . 
K 5 HOH A 15 2015 2015 HOH HOH . 
K 5 HOH A 16 2016 2016 HOH HOH . 
K 5 HOH A 17 2017 2017 HOH HOH . 
K 5 HOH A 18 2018 2018 HOH HOH . 
K 5 HOH A 19 2019 2019 HOH HOH . 
K 5 HOH A 20 2020 2020 HOH HOH . 
K 5 HOH A 21 2021 2021 HOH HOH . 
K 5 HOH A 22 2022 2022 HOH HOH . 
K 5 HOH A 23 2023 2023 HOH HOH . 
K 5 HOH A 24 2024 2024 HOH HOH . 
K 5 HOH A 25 2025 2025 HOH HOH . 
K 5 HOH A 26 2026 2026 HOH HOH . 
K 5 HOH A 27 2027 2027 HOH HOH . 
K 5 HOH A 28 2028 2028 HOH HOH . 
K 5 HOH A 29 2029 2029 HOH HOH . 
K 5 HOH A 30 2030 2030 HOH HOH . 
K 5 HOH A 31 2031 2031 HOH HOH . 
K 5 HOH A 32 2032 2032 HOH HOH . 
K 5 HOH A 33 2033 2033 HOH HOH . 
K 5 HOH A 34 2034 2034 HOH HOH . 
K 5 HOH A 35 2035 2035 HOH HOH . 
K 5 HOH A 36 2036 2036 HOH HOH . 
K 5 HOH A 37 2037 2037 HOH HOH . 
K 5 HOH A 38 2038 2038 HOH HOH . 
K 5 HOH A 39 2039 2039 HOH HOH . 
K 5 HOH A 40 2040 2040 HOH HOH . 
K 5 HOH A 41 2041 2041 HOH HOH . 
K 5 HOH A 42 2042 2042 HOH HOH . 
K 5 HOH A 43 2043 2043 HOH HOH . 
K 5 HOH A 44 2044 2044 HOH HOH . 
K 5 HOH A 45 2045 2045 HOH HOH . 
K 5 HOH A 46 2046 2046 HOH HOH . 
K 5 HOH A 47 2047 2047 HOH HOH . 
K 5 HOH A 48 2048 2048 HOH HOH . 
K 5 HOH A 49 2049 2049 HOH HOH . 
K 5 HOH A 50 2050 2050 HOH HOH . 
K 5 HOH A 51 2051 2051 HOH HOH . 
K 5 HOH A 52 2052 2052 HOH HOH . 
K 5 HOH A 53 2053 2053 HOH HOH . 
K 5 HOH A 54 2054 2054 HOH HOH . 
K 5 HOH A 55 2055 2055 HOH HOH . 
K 5 HOH A 56 2056 2056 HOH HOH . 
K 5 HOH A 57 2057 2057 HOH HOH . 
K 5 HOH A 58 2058 2058 HOH HOH . 
K 5 HOH A 59 2059 2059 HOH HOH . 
K 5 HOH A 60 2060 2060 HOH HOH . 
K 5 HOH A 61 2061 2061 HOH HOH . 
K 5 HOH A 62 2062 2062 HOH HOH . 
K 5 HOH A 63 2063 2063 HOH HOH . 
K 5 HOH A 64 2064 2064 HOH HOH . 
K 5 HOH A 65 2065 2065 HOH HOH . 
K 5 HOH A 66 2066 2066 HOH HOH . 
K 5 HOH A 67 2067 2067 HOH HOH . 
K 5 HOH A 68 2068 2068 HOH HOH . 
K 5 HOH A 69 2069 2069 HOH HOH . 
K 5 HOH A 70 2070 2070 HOH HOH . 
K 5 HOH A 71 2071 2071 HOH HOH . 
K 5 HOH A 72 2072 2072 HOH HOH . 
K 5 HOH A 73 2073 2073 HOH HOH . 
K 5 HOH A 74 2074 2074 HOH HOH . 
K 5 HOH A 75 2075 2075 HOH HOH . 
K 5 HOH A 76 2076 2076 HOH HOH . 
K 5 HOH A 77 2077 2077 HOH HOH . 
K 5 HOH A 78 2078 2078 HOH HOH . 
K 5 HOH A 79 2079 2079 HOH HOH . 
K 5 HOH A 80 2080 2080 HOH HOH . 
K 5 HOH A 81 2081 2081 HOH HOH . 
K 5 HOH A 82 2082 2082 HOH HOH . 
K 5 HOH A 83 2083 2083 HOH HOH . 
K 5 HOH A 84 2084 2084 HOH HOH . 
K 5 HOH A 85 2085 2085 HOH HOH . 
K 5 HOH A 86 2086 2086 HOH HOH . 
K 5 HOH A 87 2087 2087 HOH HOH . 
K 5 HOH A 88 2088 2088 HOH HOH . 
K 5 HOH A 89 2089 2089 HOH HOH . 
K 5 HOH A 90 2090 2090 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
L 5 HOH B 4 2004 2004 HOH HOH . 
L 5 HOH B 5 2005 2005 HOH HOH . 
L 5 HOH B 6 2006 2006 HOH HOH . 
L 5 HOH B 7 2007 2007 HOH HOH . 
L 5 HOH B 8 2008 2008 HOH HOH . 
L 5 HOH B 9 2009 2009 HOH HOH . 
L 5 HOH B 10 2010 2010 HOH HOH . 
L 5 HOH B 11 2011 2011 HOH HOH . 
L 5 HOH B 12 2012 2012 HOH HOH . 
L 5 HOH B 13 2013 2013 HOH HOH . 
L 5 HOH B 14 2014 2014 HOH HOH . 
L 5 HOH B 15 2015 2015 HOH HOH . 
L 5 HOH B 16 2016 2016 HOH HOH . 
L 5 HOH B 17 2017 2017 HOH HOH . 
L 5 HOH B 18 2018 2018 HOH HOH . 
L 5 HOH B 19 2019 2019 HOH HOH . 
L 5 HOH B 20 2020 2020 HOH HOH . 
L 5 HOH B 21 2021 2021 HOH HOH . 
L 5 HOH B 22 2022 2022 HOH HOH . 
L 5 HOH B 23 2023 2023 HOH HOH . 
L 5 HOH B 24 2024 2024 HOH HOH . 
L 5 HOH B 25 2025 2025 HOH HOH . 
L 5 HOH B 26 2026 2026 HOH HOH . 
L 5 HOH B 27 2027 2027 HOH HOH . 
L 5 HOH B 28 2028 2028 HOH HOH . 
L 5 HOH B 29 2029 2029 HOH HOH . 
L 5 HOH B 30 2030 2030 HOH HOH . 
L 5 HOH B 31 2031 2031 HOH HOH . 
L 5 HOH B 32 2032 2032 HOH HOH . 
L 5 HOH B 33 2033 2033 HOH HOH . 
L 5 HOH B 34 2034 2034 HOH HOH . 
L 5 HOH B 35 2035 2035 HOH HOH . 
L 5 HOH B 36 2036 2036 HOH HOH . 
L 5 HOH B 37 2037 2037 HOH HOH . 
L 5 HOH B 38 2038 2038 HOH HOH . 
L 5 HOH B 39 2039 2039 HOH HOH . 
L 5 HOH B 40 2040 2040 HOH HOH . 
L 5 HOH B 41 2041 2041 HOH HOH . 
L 5 HOH B 42 2042 2042 HOH HOH . 
L 5 HOH B 43 2043 2043 HOH HOH . 
L 5 HOH B 44 2044 2044 HOH HOH . 
L 5 HOH B 45 2045 2045 HOH HOH . 
L 5 HOH B 46 2046 2046 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 V4E . . . J 2 12.988 51.598 14.855 1 66.68 ? C01 V4E 1000 B 1 
HETATM 2 C C02 V4E . . . J 2 11.65 50.972 15.169 1 69.56 ? C02 V4E 1000 B 1 
HETATM 3 C C03 V4E . . . J 2 11.431 49.933 16.147 1 68.64 ? C03 V4E 1000 B 1 
HETATM 4 C C04 V4E . . . J 2 12.481 49.29 17.049 1 63.28 ? C04 V4E 1000 B 1 
HETATM 5 C C05 V4E . . . J 2 13.419 48.412 16.256 1 59.68 ? C05 V4E 1000 B 1 
HETATM 6 O O06 V4E . . . J 2 12.643 47.484 15.549 1 56.13 ? O06 V4E 1000 B 1 
HETATM 7 P P07 V4E . . . J 2 13.444 46.419 14.704 1 54.97 ? P07 V4E 1000 B 1 
HETATM 8 O O08 V4E . . . J 2 13.934 46.969 13.432 1 55.26 -1 O08 V4E 1000 B 1 
HETATM 9 O O09 V4E . . . J 2 12.469 45.395 14.257 1 60.09 ? O09 V4E 1000 B 1 
HETATM 10 O O10 V4E . . . J 2 14.686 45.808 15.503 1 53.89 ? O10 V4E 1000 B 1 
HETATM 11 P P11 V4E . . . J 2 15.223 44.33 15.27 1 52.31 ? P11 V4E 1000 B 1 
HETATM 12 O O12 V4E . . . J 2 14.479 43.391 16.137 1 52.59 -1 O12 V4E 1000 B 1 
HETATM 13 O O13 V4E . . . J 2 14.969 43.874 13.893 1 51.34 ? O13 V4E 1000 B 1 
HETATM 14 O O14 V4E . . . J 2 16.739 44.116 15.688 1 52.74 ? O14 V4E 1000 B 1 
HETATM 15 P P15 V4E . . . J 2 18.07 44.665 15.037 1 48.9 ? P15 V4E 1000 B 1 
HETATM 16 O O16 V4E . . . J 2 18.564 45.839 15.77 1 52.54 -1 O16 V4E 1000 B 1 
HETATM 17 O O17 V4E . . . J 2 17.869 45.033 13.523 1 55.72 -1 O17 V4E 1000 B 1 
HETATM 18 O O18 V4E . . . J 2 19.152 43.676 15.218 1 43.35 ? O18 V4E 1000 B 1 
HETATM 19 S S19 V4E . . . J 2 9.948 49.584 16.138 1 74.21 ? S19 V4E 1000 B 1 
HETATM 20 C C20 V4E . . . J 2 9.259 50.488 15.09 1 75.12 ? C20 V4E 1000 B 1 
HETATM 21 N N21 V4E . . . J 2 10.259 51.317 14.49 1 74.92 ? N21 V4E 1000 B 1 
HETATM 22 C C22 V4E . . . J 2 10.047 52.319 13.45 1 79.53 ? C22 V4E 1000 B 1 
HETATM 23 C C23 V4E . . . J 2 8.739 52.099 12.637 1 82.98 ? C23 V4E 1000 B 1 
HETATM 24 C C24 V4E . . . J 2 7.722 53.066 12.56 1 82.69 ? C24 V4E 1000 B 1 
HETATM 25 N N25 V4E . . . J 2 7.798 54.335 13.216 1 80.81 ? N25 V4E 1000 B 1 
HETATM 26 N N26 V4E . . . J 2 6.606 52.808 11.836 1 86.58 ? N26 V4E 1000 B 1 
HETATM 27 C C27 V4E . . . J 2 6.442 51.62 11.175 1 86.56 ? C27 V4E 1000 B 1 
HETATM 28 C C28 V4E . . . J 2 5.165 51.372 10.372 1 84.61 ? C28 V4E 1000 B 1 
HETATM 29 N N29 V4E . . . J 2 7.43 50.67 11.24 1 88.46 ? N29 V4E 1000 B 1 
HETATM 30 C C30 V4E . . . J 2 8.576 50.899 11.962 1 85.62 ? C30 V4E 1000 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#