data_5A65 # _model_server_result.job_id IzZvIJdKec-kGVoD0vQgOg _model_server_result.datetime_utc '2024-11-23 17:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5A65 # _exptl.entry_id 5A65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A65 _cell.length_a 105.483 _cell.length_b 105.483 _cell.length_c 111.805 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 147 A ASP 145 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OE1 GLU 159 A GLU 157 1_555 C MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OE2 GLU 161 A GLU 159 1_555 C MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 A OE2 GLU 161 A GLU 159 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A OE1 GLU 161 A GLU 159 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C MG MG . A MG 500 1_555 F O2 PO4 . A PO4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 C MG MG . A MG 500 1_555 M O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc8 C MG MG . A MG 500 1_555 M O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc9 C MG MG . A MG 500 1_555 M O HOH . A HOH 2047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 D MG MG . A MG 501 1_555 F O3 PO4 . A PO4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc11 D MG MG . A MG 501 1_555 M O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc12 D MG MG . A MG 501 1_555 M O HOH . A HOH 2050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc13 B OD2 ASP 147 B ASP 145 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc14 B OE1 GLU 159 B GLU 157 1_555 H MG MG . B MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B OE2 GLU 161 B GLU 159 1_555 H MG MG . B MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc16 B OE1 GLU 161 B GLU 159 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc17 B OE2 GLU 161 B GLU 159 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc18 H MG MG . B MG 500 1_555 K O2 PO4 . B PO4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc19 H MG MG . B MG 500 1_555 N O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc20 H MG MG . B MG 500 1_555 N O HOH . B HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc21 H MG MG . B MG 500 1_555 N O HOH . B HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc22 I MG MG . B MG 501 1_555 K O1 PO4 . B PO4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc23 I MG MG . B MG 501 1_555 N O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc24 I MG MG . B MG 501 1_555 N O HOH . B HOH 2032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5A65 _atom_sites.fract_transf_matrix[1][1] 0.00948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 500 500 MG MG . D 2 MG A 1 501 501 MG MG . E 3 TPP A 1 1000 1000 TPP TPP . F 4 PO4 A 1 1001 1001 PO4 PO4 . G 5 EDO A 1 1100 1100 EDO EDO . H 2 MG B 1 500 500 MG MG . I 2 MG B 1 501 501 MG MG . J 3 TPP B 1 1000 1000 TPP TPP . K 4 PO4 B 1 1001 1001 PO4 PO4 . L 5 EDO B 1 1100 1100 EDO EDO . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . M 6 HOH A 16 2016 2016 HOH HOH . M 6 HOH A 17 2017 2017 HOH HOH . M 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH A 19 2019 2019 HOH HOH . M 6 HOH A 20 2020 2020 HOH HOH . M 6 HOH A 21 2021 2021 HOH HOH . M 6 HOH A 22 2022 2022 HOH HOH . M 6 HOH A 23 2023 2023 HOH HOH . M 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH A 25 2025 2025 HOH HOH . M 6 HOH A 26 2026 2026 HOH HOH . M 6 HOH A 27 2027 2027 HOH HOH . M 6 HOH A 28 2028 2028 HOH HOH . M 6 HOH A 29 2029 2029 HOH HOH . M 6 HOH A 30 2030 2030 HOH HOH . M 6 HOH A 31 2031 2031 HOH HOH . M 6 HOH A 32 2032 2032 HOH HOH . M 6 HOH A 33 2033 2033 HOH HOH . M 6 HOH A 34 2034 2034 HOH HOH . M 6 HOH A 35 2035 2035 HOH HOH . M 6 HOH A 36 2036 2036 HOH HOH . M 6 HOH A 37 2037 2037 HOH HOH . M 6 HOH A 38 2038 2038 HOH HOH . M 6 HOH A 39 2039 2039 HOH HOH . M 6 HOH A 40 2040 2040 HOH HOH . M 6 HOH A 41 2041 2041 HOH HOH . M 6 HOH A 42 2042 2042 HOH HOH . M 6 HOH A 43 2043 2043 HOH HOH . M 6 HOH A 44 2044 2044 HOH HOH . M 6 HOH A 45 2045 2045 HOH HOH . M 6 HOH A 46 2046 2046 HOH HOH . M 6 HOH A 47 2047 2047 HOH HOH . M 6 HOH A 48 2048 2048 HOH HOH . M 6 HOH A 49 2049 2049 HOH HOH . M 6 HOH A 50 2050 2050 HOH HOH . M 6 HOH A 51 2051 2051 HOH HOH . M 6 HOH A 52 2052 2052 HOH HOH . M 6 HOH A 53 2053 2053 HOH HOH . M 6 HOH A 54 2054 2054 HOH HOH . M 6 HOH A 55 2055 2055 HOH HOH . M 6 HOH A 56 2056 2056 HOH HOH . M 6 HOH A 57 2057 2057 HOH HOH . M 6 HOH A 58 2058 2058 HOH HOH . M 6 HOH A 59 2059 2059 HOH HOH . M 6 HOH A 60 2060 2060 HOH HOH . M 6 HOH A 61 2061 2061 HOH HOH . M 6 HOH A 62 2062 2062 HOH HOH . M 6 HOH A 63 2063 2063 HOH HOH . M 6 HOH A 64 2064 2064 HOH HOH . M 6 HOH A 65 2065 2065 HOH HOH . M 6 HOH A 66 2066 2066 HOH HOH . M 6 HOH A 67 2067 2067 HOH HOH . M 6 HOH A 68 2068 2068 HOH HOH . M 6 HOH A 69 2069 2069 HOH HOH . M 6 HOH A 70 2070 2070 HOH HOH . M 6 HOH A 71 2071 2071 HOH HOH . M 6 HOH A 72 2072 2072 HOH HOH . M 6 HOH A 73 2073 2073 HOH HOH . M 6 HOH A 74 2074 2074 HOH HOH . N 6 HOH B 1 2001 2001 HOH HOH . N 6 HOH B 2 2002 2002 HOH HOH . N 6 HOH B 3 2003 2003 HOH HOH . N 6 HOH B 4 2004 2004 HOH HOH . N 6 HOH B 5 2005 2005 HOH HOH . N 6 HOH B 6 2006 2006 HOH HOH . N 6 HOH B 7 2007 2007 HOH HOH . N 6 HOH B 8 2008 2008 HOH HOH . N 6 HOH B 9 2009 2009 HOH HOH . N 6 HOH B 10 2010 2010 HOH HOH . N 6 HOH B 11 2011 2011 HOH HOH . N 6 HOH B 12 2012 2012 HOH HOH . N 6 HOH B 13 2013 2013 HOH HOH . N 6 HOH B 14 2014 2014 HOH HOH . N 6 HOH B 15 2015 2015 HOH HOH . N 6 HOH B 16 2016 2016 HOH HOH . N 6 HOH B 17 2017 2017 HOH HOH . N 6 HOH B 18 2018 2018 HOH HOH . N 6 HOH B 19 2019 2019 HOH HOH . N 6 HOH B 20 2020 2020 HOH HOH . N 6 HOH B 21 2021 2021 HOH HOH . N 6 HOH B 22 2022 2022 HOH HOH . N 6 HOH B 23 2023 2023 HOH HOH . N 6 HOH B 24 2024 2024 HOH HOH . N 6 HOH B 25 2025 2025 HOH HOH . N 6 HOH B 26 2026 2026 HOH HOH . N 6 HOH B 27 2027 2027 HOH HOH . N 6 HOH B 28 2028 2028 HOH HOH . N 6 HOH B 29 2029 2029 HOH HOH . N 6 HOH B 30 2030 2030 HOH HOH . N 6 HOH B 31 2031 2031 HOH HOH . N 6 HOH B 32 2032 2032 HOH HOH . N 6 HOH B 33 2033 2033 HOH HOH . N 6 HOH B 34 2034 2034 HOH HOH . N 6 HOH B 35 2035 2035 HOH HOH . N 6 HOH B 36 2036 2036 HOH HOH . N 6 HOH B 37 2037 2037 HOH HOH . N 6 HOH B 38 2038 2038 HOH HOH . N 6 HOH B 39 2039 2039 HOH HOH . N 6 HOH B 40 2040 2040 HOH HOH . N 6 HOH B 41 2041 2041 HOH HOH . N 6 HOH B 42 2042 2042 HOH HOH . N 6 HOH B 43 2043 2043 HOH HOH . N 6 HOH B 44 2044 2044 HOH HOH . N 6 HOH B 45 2045 2045 HOH HOH . N 6 HOH B 46 2046 2046 HOH HOH . N 6 HOH B 47 2047 2047 HOH HOH . N 6 HOH B 48 2048 2048 HOH HOH . N 6 HOH B 49 2049 2049 HOH HOH . N 6 HOH B 50 2050 2050 HOH HOH . N 6 HOH B 51 2051 2051 HOH HOH . N 6 HOH B 52 2052 2052 HOH HOH . N 6 HOH B 53 2053 2053 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.34 _atom_site.Cartn_y -16.87 _atom_site.Cartn_z 18.475 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #