data_5A69 # _model_server_result.job_id mZSRcqxXNOOVc9vW_ZvRoQ _model_server_result.datetime_utc '2024-11-24 02:59:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1627}' # _entry.id 5A69 # _exptl.entry_id 5A69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-[(3R,4R,5R,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-ylidene]amino] N-phenylcarbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A69 _cell.length_a 85.78 _cell.length_b 95.58 _cell.length_c 131.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -65.775 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H19 N3 O7' _chem_comp.formula_weight 353.327 _chem_comp.id OGN _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-[(3R,4R,5R,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-ylidene]amino] N-phenylcarbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Gal-PUGNAc # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB OGN sing 237 n n CAA OAL OGN sing 238 n n CAA NAY OGN doub 239 z n CAB CAC OGN sing 240 n n CAB NAI OGN sing 241 n n CAC CAD OGN sing 242 n n CAC OAJ OGN sing 243 n n CAD CAE OGN sing 244 n n CAD OAK OGN sing 245 n n CAE CAF OGN sing 246 n n CAE OAL OGN sing 247 n n CAF OAM OGN sing 248 n n CAG CAH OGN sing 249 n n CAG NAI OGN sing 250 n n CAG OAN OGN doub 251 n n NAO CAP OGN sing 252 n n NAO CAS OGN sing 253 n n CAP OAQ OGN sing 254 n n CAP OAR OGN doub 255 n n OAQ NAY OGN sing 256 n n CAS CAT OGN doub 257 n y CAS CAX OGN sing 258 n y CAT CAU OGN sing 259 n y CAU CAV OGN doub 260 n y CAV CAW OGN sing 261 n y CAW CAX OGN doub 262 n y CAB HAB OGN sing 263 n n CAC HAC OGN sing 264 n n CAD HAD OGN sing 265 n n CAE HAE OGN sing 266 n n CAF HAF OGN sing 267 n n CAF HAFA OGN sing 268 n n CAH HAH OGN sing 269 n n CAH HAHA OGN sing 270 n n CAH HAHB OGN sing 271 n n NAI HNAI OGN sing 272 n n OAJ HOAJ OGN sing 273 n n OAK HOAK OGN sing 274 n n OAM HOAM OGN sing 275 n n NAO HNAO OGN sing 276 n n CAT HAT OGN sing 277 n n CAU HAU OGN sing 278 n n CAV HAV OGN sing 279 n n CAW HAW OGN sing 280 n n CAX HAX OGN sing 281 n n # _atom_sites.entry_id 5A69 _atom_sites.fract_transf_matrix[1][1] 0.011658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OGN A 1 1627 1627 OGN OGN . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA OGN . . . B 2 -5.919 -31.592 -17.219 1 35.25 ? CAA OGN 1627 A 1 HETATM 2 C CAB OGN . . . B 2 -4.386 -31.501 -17.402 1 34.09 ? CAB OGN 1627 A 1 HETATM 3 C CAC OGN . . . B 2 -3.804 -30.135 -16.929 1 36.35 ? CAC OGN 1627 A 1 HETATM 4 C CAD OGN . . . B 2 -4.836 -29.161 -17.39 1 29.38 ? CAD OGN 1627 A 1 HETATM 5 C CAE OGN . . . B 2 -6.059 -29.195 -16.592 1 28 ? CAE OGN 1627 A 1 HETATM 6 C CAF OGN . . . B 2 -7.01 -28.004 -16.841 1 28.32 ? CAF OGN 1627 A 1 HETATM 7 C CAG OGN . . . B 2 -4.31 -32.827 -15.335 1 40.11 ? CAG OGN 1627 A 1 HETATM 8 C CAH OGN . . . B 2 -3.653 -33.952 -14.551 1 41.85 ? CAH OGN 1627 A 1 HETATM 9 N NAI OGN . . . B 2 -3.838 -32.59 -16.559 1 36.45 ? NAI OGN 1627 A 1 HETATM 10 O OAJ OGN . . . B 2 -2.493 -29.749 -17.414 1 33.39 ? OAJ OGN 1627 A 1 HETATM 11 O OAK OGN . . . B 2 -4.771 -28.582 -18.455 1 29.5 ? OAK OGN 1627 A 1 HETATM 12 O OAL OGN . . . B 2 -6.672 -30.377 -17.079 1 30.7 ? OAL OGN 1627 A 1 HETATM 13 O OAM OGN . . . B 2 -7.611 -28.023 -18.142 1 23.89 ? OAM OGN 1627 A 1 HETATM 14 O OAN OGN . . . B 2 -5.24 -32.167 -14.856 1 33.88 ? OAN OGN 1627 A 1 HETATM 15 N NAO OGN . . . B 2 -10.127 -32.815 -18.969 1 50.17 ? NAO OGN 1627 A 1 HETATM 16 C CAP OGN . . . B 2 -8.805 -32.877 -19.154 1 45.14 ? CAP OGN 1627 A 1 HETATM 17 O OAQ OGN . . . B 2 -7.962 -32.24 -18.156 1 43.92 ? OAQ OGN 1627 A 1 HETATM 18 O OAR OGN . . . B 2 -8.242 -33.405 -20.105 1 44.44 ? OAR OGN 1627 A 1 HETATM 19 C CAS OGN . . . B 2 -11.071 -33.366 -19.837 1 57.31 ? CAS OGN 1627 A 1 HETATM 20 C CAT OGN . . . B 2 -10.929 -33.294 -21.224 1 65.48 ? CAT OGN 1627 A 1 HETATM 21 C CAU OGN . . . B 2 -11.912 -33.856 -22.047 1 68.66 ? CAU OGN 1627 A 1 HETATM 22 C CAV OGN . . . B 2 -13.026 -34.49 -21.492 1 66.36 ? CAV OGN 1627 A 1 HETATM 23 C CAW OGN . . . B 2 -13.167 -34.554 -20.111 1 63.33 ? CAW OGN 1627 A 1 HETATM 24 C CAX OGN . . . B 2 -12.193 -33.985 -19.289 1 61.31 ? CAX OGN 1627 A 1 HETATM 25 N NAY OGN . . . B 2 -6.621 -32.252 -18.27 1 37.33 ? NAY OGN 1627 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #