data_5A6A
#
_model_server_result.job_id            et8VwBZgiVPmoDyy-lBzJg 
_model_server_result.datetime_utc      '2024-10-10 11:18:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a6a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1628}' 
#
_entry.id    5A6A 
#
_exptl.entry_id    5A6A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.258 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A6A 
_cell.length_a            83.337 
_cell.length_b            96.277 
_cell.length_c            132.732 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A6A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C8 H13 N O4 S' 
_chem_comp.formula_weight    219.258 
_chem_comp.id                NGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NGT sing 246 n n 
C1 S1 NGT sing 247 n n 
C1 O5 NGT sing 248 n n 
C1 HC1 NGT sing 249 n n 
C2 C3 NGT sing 250 n n 
C2 N2 NGT sing 251 n n 
C2 HC2 NGT sing 252 n n 
C3 C4 NGT sing 253 n n 
C3 O3 NGT sing 254 n n 
C3 HC3 NGT sing 255 n n 
C4 C5 NGT sing 256 n n 
C4 O4 NGT sing 257 n n 
C4 HC4 NGT sing 258 n n 
C5 C6 NGT sing 259 n n 
C5 O5 NGT sing 260 n n 
C5 HC5 NGT sing 261 n n 
C6 O6 NGT sing 262 n n 
C6 HC61 NGT sing 263 n n 
C6 HC62 NGT sing 264 n n 
C7 C8 NGT sing 265 n n 
C7 N2 NGT doub 266 n n 
C7 S1 NGT sing 267 n n 
C8 HC81 NGT sing 268 n n 
C8 HC82 NGT sing 269 n n 
C8 HC83 NGT sing 270 n n 
O3 HO3 NGT sing 271 n n 
O4 HO4 NGT sing 272 n n 
O6 HO6 NGT sing 273 n n 
#
_atom_sites.entry_id                     5A6A 
_atom_sites.fract_transf_matrix[1][1]    0.011999 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 1627 1627 EDO EDO . 
D 3 NGT A 1 1628 1628 NGT NGT . 
E 3 NGT B 1 1627 1627 NGT NGT . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2007 2007 HOH HOH . 
G 4 HOH B 8 2008 2008 HOH HOH . 
G 4 HOH B 9 2009 2009 HOH HOH . 
G 4 HOH B 10 2010 2010 HOH HOH . 
G 4 HOH B 11 2011 2011 HOH HOH . 
G 4 HOH B 12 2012 2012 HOH HOH . 
G 4 HOH B 13 2013 2013 HOH HOH . 
G 4 HOH B 14 2014 2014 HOH HOH . 
G 4 HOH B 15 2015 2015 HOH HOH . 
G 4 HOH B 16 2016 2016 HOH HOH . 
G 4 HOH B 17 2017 2017 HOH HOH . 
G 4 HOH B 18 2018 2018 HOH HOH . 
G 4 HOH B 19 2019 2019 HOH HOH . 
G 4 HOH B 20 2020 2020 HOH HOH . 
G 4 HOH B 21 2021 2021 HOH HOH . 
G 4 HOH B 22 2022 2022 HOH HOH . 
G 4 HOH B 23 2023 2023 HOH HOH . 
G 4 HOH B 24 2024 2024 HOH HOH . 
G 4 HOH B 25 2025 2025 HOH HOH . 
G 4 HOH B 26 2026 2026 HOH HOH . 
G 4 HOH B 27 2027 2027 HOH HOH . 
G 4 HOH B 28 2028 2028 HOH HOH . 
G 4 HOH B 29 2029 2029 HOH HOH . 
G 4 HOH B 30 2030 2030 HOH HOH . 
G 4 HOH B 31 2031 2031 HOH HOH . 
G 4 HOH B 32 2032 2032 HOH HOH . 
G 4 HOH B 33 2033 2033 HOH HOH . 
G 4 HOH B 34 2034 2034 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NGT . . . D 3 -17.662 -31.164 16.373 1 23.53 ? C1 NGT 1628 A 1 
HETATM 2 C C2 NGT . . . D 3 -18.98 -31.013 17.185 1 23.48 ? C2 NGT 1628 A 1 
HETATM 3 C C3 NGT . . . D 3 -19.534 -29.581 17.164 1 22.54 ? C3 NGT 1628 A 1 
HETATM 4 C C4 NGT . . . D 3 -18.458 -28.571 17.473 1 21.94 ? C4 NGT 1628 A 1 
HETATM 5 C C5 NGT . . . D 3 -17.309 -28.743 16.48 1 22.17 ? C5 NGT 1628 A 1 
HETATM 6 C C6 NGT . . . D 3 -16.222 -27.697 16.704 1 22.03 ? C6 NGT 1628 A 1 
HETATM 7 C C7 NGT . . . D 3 -19.657 -31.966 15.221 1 22.54 ? C7 NGT 1628 A 1 
HETATM 8 C C8 NGT . . . D 3 -20.681 -32.582 14.316 1 22.16 ? C8 NGT 1628 A 1 
HETATM 9 N N2 NGT . . . D 3 -19.923 -31.855 16.452 1 22.23 ? N2 NGT 1628 A 1 
HETATM 10 S S1 NGT . . . D 3 -18.169 -31.399 14.686 1 23.45 ? S1 NGT 1628 A 1 
HETATM 11 O O3 NGT . . . D 3 -20.592 -29.353 18.098 1 23.77 ? O3 NGT 1628 A 1 
HETATM 12 O O4 NGT . . . D 3 -19.085 -27.289 17.34 1 21.32 ? O4 NGT 1628 A 1 
HETATM 13 O O5 NGT . . . D 3 -16.751 -30.063 16.559 1 22.52 ? O5 NGT 1628 A 1 
HETATM 14 O O6 NGT . . . D 3 -15.69 -27.868 18.023 1 21.94 ? O6 NGT 1628 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#