data_5A7I # _model_server_result.job_id j3chPaFZaqGpab6ytGNzsw _model_server_result.datetime_utc '2024-10-13 17:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1572}' # _entry.id 5A7I # _exptl.entry_id 5A7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 730.084 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "Biphenyl 3,3',4,4',5,5'-hexakisphosphate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A7I _cell.length_a 96.975 _cell.length_b 96.975 _cell.length_c 152.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 46 A GLU 303 5_545 E MG MG . A MG 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 C O43 B6K . A B6K 1572 1_555 E MG MG . A MG 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 D O3 PO4 . A PO4 1573 1_555 E MG MG . A MG 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C12 H16 O24 P6' _chem_comp.formula_weight 730.084 _chem_comp.id B6K _chem_comp.mon_nstd_flag . _chem_comp.name "Biphenyl 3,3',4,4',5,5'-hexakisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 B6K doub 70 n y C1 C14 B6K sing 71 n n C1 C6 B6K sing 72 n y C3 C2 B6K sing 73 n y C2 H2 B6K sing 74 n n O3 C3 B6K sing 75 n n C3 C4 B6K doub 76 n y P3 O3 B6K sing 77 n n O32 P3 B6K doub 78 n n P3 O33 B6K sing 79 n n P3 O31 B6K sing 80 n n O4 C4 B6K sing 81 n n C4 C5 B6K sing 82 n y O4 P4 B6K sing 83 n n O41 P4 B6K doub 84 n n P4 O43 B6K sing 85 n n P4 O42 B6K sing 86 n n C5 C6 B6K doub 87 n y C5 O5 B6K sing 88 n n O5 P5 B6K sing 89 n n O53 P5 B6K doub 90 n n P5 O51 B6K sing 91 n n P5 O52 B6K sing 92 n n C6 H6 B6K sing 93 n n C19 C14 B6K doub 94 n y C14 C15 B6K sing 95 n y C15 C16 B6K doub 96 n y C15 H15 B6K sing 97 n n C17 C16 B6K sing 98 n y C16 O16 B6K sing 99 n n O16 P16 B6K sing 100 n n O62 P16 B6K doub 101 n n P16 O63 B6K sing 102 n n P16 O61 B6K sing 103 n n C18 C17 B6K doub 104 n y C17 O17 B6K sing 105 n n O17 P17 B6K sing 106 n n O73 P17 B6K doub 107 n n P17 O71 B6K sing 108 n n P17 O72 B6K sing 109 n n O18 C18 B6K sing 110 n n C19 C18 B6K sing 111 n y P18 O18 B6K sing 112 n n O82 P18 B6K doub 113 n n O81 P18 B6K sing 114 n n P18 O83 B6K sing 115 n n C19 H19 B6K sing 116 n n O31 HO31 B6K sing 117 n n O33 HO33 B6K sing 118 n n O42 HO42 B6K sing 119 n n O43 HO43 B6K sing 120 n n O51 HO51 B6K sing 121 n n O52 HO52 B6K sing 122 n n O61 H161 B6K sing 123 n n O63 H163 B6K sing 124 n n O71 H171 B6K sing 125 n n O72 H172 B6K sing 126 n n O81 H181 B6K sing 127 n n O83 H183 B6K sing 128 n n # _atom_sites.entry_id 5A7I _atom_sites.fract_transf_matrix[1][1] 0.010312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1571 1571 GOL GOL . C 3 B6K A 1 1572 1572 B6K B6K . D 4 PO4 A 1 1573 1573 PO4 PO4 . E 5 MG A 1 1574 1574 MG MG . F 4 PO4 A 1 1575 1575 PO4 PO4 . G 4 PO4 A 1 1576 1576 PO4 PO4 . H 6 CL A 1 1577 1577 CL CL . I 7 HOH A 1 2001 2001 HOH HOH . I 7 HOH A 2 2002 2002 HOH HOH . I 7 HOH A 3 2003 2003 HOH HOH . I 7 HOH A 4 2004 2004 HOH HOH . I 7 HOH A 5 2005 2005 HOH HOH . I 7 HOH A 6 2006 2006 HOH HOH . I 7 HOH A 7 2007 2007 HOH HOH . I 7 HOH A 8 2008 2008 HOH HOH . I 7 HOH A 9 2009 2009 HOH HOH . I 7 HOH A 10 2010 2010 HOH HOH . I 7 HOH A 11 2011 2011 HOH HOH . I 7 HOH A 12 2012 2012 HOH HOH . I 7 HOH A 13 2013 2013 HOH HOH . I 7 HOH A 14 2014 2014 HOH HOH . I 7 HOH A 15 2015 2015 HOH HOH . I 7 HOH A 16 2016 2016 HOH HOH . I 7 HOH A 17 2017 2017 HOH HOH . I 7 HOH A 18 2018 2018 HOH HOH . I 7 HOH A 19 2019 2019 HOH HOH . I 7 HOH A 20 2020 2020 HOH HOH . I 7 HOH A 21 2021 2021 HOH HOH . I 7 HOH A 22 2022 2022 HOH HOH . I 7 HOH A 23 2023 2023 HOH HOH . I 7 HOH A 24 2024 2024 HOH HOH . I 7 HOH A 25 2025 2025 HOH HOH . I 7 HOH A 26 2026 2026 HOH HOH . I 7 HOH A 27 2027 2027 HOH HOH . I 7 HOH A 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B6K . . . C 3 42.791 -56.623 15.089 1 75.56 ? C1 B6K 1572 A 1 HETATM 2 C C2 B6K . . . C 3 42.641 -56.896 16.457 1 74.96 ? C2 B6K 1572 A 1 HETATM 3 C C3 B6K . . . C 3 41.691 -57.814 16.901 1 74.86 ? C3 B6K 1572 A 1 HETATM 4 O O3 B6K . . . C 3 41.472 -58.125 18.212 1 76.65 ? O3 B6K 1572 A 1 HETATM 5 P P3 B6K . . . C 3 42.54 -58.231 19.408 1 78.66 ? P3 B6K 1572 A 1 HETATM 6 C C4 B6K . . . C 3 40.817 -58.493 15.919 1 73.91 ? C4 B6K 1572 A 1 HETATM 7 O O4 B6K . . . C 3 39.883 -59.409 16.308 1 73.88 ? O4 B6K 1572 A 1 HETATM 8 P P4 B6K . . . C 3 40.294 -60.977 16.348 1 74.24 ? P4 B6K 1572 A 1 HETATM 9 C C5 B6K . . . C 3 40.982 -58.182 14.496 1 73.22 ? C5 B6K 1572 A 1 HETATM 10 O O5 B6K . . . C 3 40.18 -58.855 13.612 1 71.6 ? O5 B6K 1572 A 1 HETATM 11 P P5 B6K . . . C 3 39.143 -58.215 12.561 1 70.4 ? P5 B6K 1572 A 1 HETATM 12 C C6 B6K . . . C 3 41.97 -57.264 14.129 1 74.67 ? C6 B6K 1572 A 1 HETATM 13 C C14 B6K . . . C 3 43.835 -55.634 14.646 1 76.59 ? C14 B6K 1572 A 1 HETATM 14 C C15 B6K . . . C 3 44.182 -54.534 15.449 1 78.07 ? C15 B6K 1572 A 1 HETATM 15 C C16 B6K . . . C 3 45.146 -53.598 15.055 1 78.95 ? C16 B6K 1572 A 1 HETATM 16 O O16 B6K . . . C 3 45.492 -52.526 15.847 1 80.21 ? O16 B6K 1572 A 1 HETATM 17 P P16 B6K . . . C 3 44.521 -51.281 16.183 1 80.84 ? P16 B6K 1572 A 1 HETATM 18 C C17 B6K . . . C 3 45.842 -53.798 13.767 1 78.63 ? C17 B6K 1572 A 1 HETATM 19 O O17 B6K . . . C 3 46.777 -52.907 13.305 1 80.25 ? O17 B6K 1572 A 1 HETATM 20 P P17 B6K . . . C 3 48.337 -52.874 13.692 1 81.2 ? P17 B6K 1572 A 1 HETATM 21 C C18 B6K . . . C 3 45.448 -54.965 12.949 1 77.54 ? C18 B6K 1572 A 1 HETATM 22 O O18 B6K . . . C 3 46.066 -55.195 11.745 1 76.94 ? O18 B6K 1572 A 1 HETATM 23 P P18 B6K . . . C 3 47.214 -56.338 11.606 1 75.49 ? P18 B6K 1572 A 1 HETATM 24 C C19 B6K . . . C 3 44.473 -55.835 13.42 1 76.78 ? C19 B6K 1572 A 1 HETATM 25 O O31 B6K . . . C 3 43.869 -57.778 18.852 1 78.32 ? O31 B6K 1572 A 1 HETATM 26 O O32 B6K . . . C 3 42.525 -59.674 19.862 1 78.69 ? O32 B6K 1572 A 1 HETATM 27 O O33 B6K . . . C 3 41.863 -57.303 20.389 1 80.21 ? O33 B6K 1572 A 1 HETATM 28 O O41 B6K . . . C 3 40.795 -61.246 14.942 1 73.92 ? O41 B6K 1572 A 1 HETATM 29 O O42 B6K . . . C 3 38.969 -61.588 16.701 1 74.15 ? O42 B6K 1572 A 1 HETATM 30 O O43 B6K . . . C 3 41.348 -61.213 17.409 1 73.02 ? O43 B6K 1572 A 1 HETATM 31 O O51 B6K . . . C 3 39.894 -58.089 11.253 1 68.1 ? O51 B6K 1572 A 1 HETATM 32 O O52 B6K . . . C 3 38.05 -59.251 12.519 1 70.37 ? O52 B6K 1572 A 1 HETATM 33 O O53 B6K . . . C 3 38.715 -56.925 13.207 1 71.16 ? O53 B6K 1572 A 1 HETATM 34 O O61 B6K . . . C 3 44.222 -50.678 14.823 1 79.23 ? O61 B6K 1572 A 1 HETATM 35 O O62 B6K . . . C 3 43.366 -51.911 16.928 1 79.68 ? O62 B6K 1572 A 1 HETATM 36 O O63 B6K . . . C 3 45.366 -50.411 17.087 1 81.18 ? O63 B6K 1572 A 1 HETATM 37 O O71 B6K . . . C 3 48.449 -53.672 14.975 1 80.09 ? O71 B6K 1572 A 1 HETATM 38 O O72 B6K . . . C 3 48.994 -53.423 12.445 1 80.41 ? O72 B6K 1572 A 1 HETATM 39 O O73 B6K . . . C 3 48.579 -51.397 13.855 1 82.68 ? O73 B6K 1572 A 1 HETATM 40 O O81 B6K . . . C 3 47.487 -56.285 10.119 1 74.73 ? O81 B6K 1572 A 1 HETATM 41 O O82 B6K . . . C 3 46.591 -57.602 12.164 1 74.45 ? O82 B6K 1572 A 1 HETATM 42 O O83 B6K . . . C 3 48.396 -55.92 12.445 1 76.03 ? O83 B6K 1572 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #