data_5A7J
#
_model_server_result.job_id            HNC5xWdY_sn3UJBd3lPGfw 
_model_server_result.datetime_utc      '2025-01-11 00:52:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a7j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1568}' 
#
_entry.id    5A7J 
#
_exptl.entry_id    5A7J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              462.029 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2,4,5-triphosphonooxyphenyl) dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.32 
_cell.angle_gamma         90 
_cell.entry_id            5A7J 
_cell.length_a            52.261 
_cell.length_b            94.442 
_cell.length_c            78.313 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A7J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,J 1 1 
B,E,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C6 H10 O16 P4' 
_chem_comp.formula_weight    462.029 
_chem_comp.id                K2Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2,4,5-triphosphonooxyphenyl) dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAC PAY K2Y doub 186 n n 
OAL PAZ K2Y doub 187 n n 
PAY OAJ K2Y sing 188 n n 
PAY OAI K2Y sing 189 n n 
PAY OAQ K2Y sing 190 n n 
PAZ OAD K2Y sing 191 n n 
PAZ OAR K2Y sing 192 n n 
PAZ OAK K2Y sing 193 n n 
OAQ CAU K2Y sing 194 n n 
CAN CAU K2Y doub 195 n y 
CAN CAV K2Y sing 196 n y 
OAR CAV K2Y sing 197 n n 
CAU CAS K2Y sing 198 n y 
CAV CAT K2Y doub 199 n y 
CAS OAO K2Y sing 200 n n 
CAS CAM K2Y doub 201 n y 
CAT CAM K2Y sing 202 n y 
CAT OAP K2Y sing 203 n n 
OAO PAW K2Y sing 204 n n 
OAP PAX K2Y sing 205 n n 
OAH PAX K2Y doub 206 n n 
OAF PAW K2Y doub 207 n n 
PAW OAA K2Y sing 208 n n 
PAW OAE K2Y sing 209 n n 
PAX OAG K2Y sing 210 n n 
PAX OAB K2Y sing 211 n n 
OAE H1 K2Y sing 212 n n 
OAA H2 K2Y sing 213 n n 
CAM H3 K2Y sing 214 n n 
OAG H4 K2Y sing 215 n n 
OAB H5 K2Y sing 216 n n 
OAK H6 K2Y sing 217 n n 
OAD H7 K2Y sing 218 n n 
CAN H8 K2Y sing 219 n n 
OAI H9 K2Y sing 220 n n 
OAJ H10 K2Y sing 221 n n 
#
_atom_sites.entry_id                     5A7J 
_atom_sites.fract_transf_matrix[1][1]    0.019135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005603 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1567 1567 SO4 SO4 . 
D 3 K2Y A 1 1568 1568 K2Y K2Y . 
E 4 GOL B 1 1567 1567 GOL GOL . 
F 2 SO4 B 1 1568 1568 SO4 SO4 . 
G 2 SO4 B 1 1569 1569 SO4 SO4 . 
H 3 K2Y B 1 1570 1570 K2Y K2Y . 
I 2 SO4 B 1 1571 1571 SO4 SO4 . 
J 5 HOH A 1 2001 2001 HOH HOH . 
J 5 HOH A 2 2002 2002 HOH HOH . 
J 5 HOH A 3 2003 2003 HOH HOH . 
J 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH A 5 2005 2005 HOH HOH . 
J 5 HOH A 6 2006 2006 HOH HOH . 
J 5 HOH A 7 2007 2007 HOH HOH . 
J 5 HOH A 8 2008 2008 HOH HOH . 
J 5 HOH A 9 2009 2009 HOH HOH . 
J 5 HOH A 10 2010 2010 HOH HOH . 
J 5 HOH A 11 2011 2011 HOH HOH . 
J 5 HOH A 12 2012 2012 HOH HOH . 
J 5 HOH A 13 2013 2013 HOH HOH . 
J 5 HOH A 14 2014 2014 HOH HOH . 
J 5 HOH A 15 2015 2015 HOH HOH . 
J 5 HOH A 16 2016 2016 HOH HOH . 
J 5 HOH A 17 2017 2017 HOH HOH . 
J 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH A 19 2019 2019 HOH HOH . 
J 5 HOH A 20 2020 2020 HOH HOH . 
J 5 HOH A 21 2021 2021 HOH HOH . 
J 5 HOH A 22 2022 2022 HOH HOH . 
J 5 HOH A 23 2023 2023 HOH HOH . 
J 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH A 25 2025 2025 HOH HOH . 
J 5 HOH A 26 2026 2026 HOH HOH . 
J 5 HOH A 27 2027 2027 HOH HOH . 
J 5 HOH A 28 2028 2028 HOH HOH . 
J 5 HOH A 29 2029 2029 HOH HOH . 
J 5 HOH A 30 2030 2030 HOH HOH . 
J 5 HOH A 31 2031 2031 HOH HOH . 
J 5 HOH A 32 2032 2032 HOH HOH . 
J 5 HOH A 33 2033 2033 HOH HOH . 
J 5 HOH A 34 2034 2034 HOH HOH . 
J 5 HOH A 35 2035 2035 HOH HOH . 
J 5 HOH A 36 2036 2036 HOH HOH . 
K 5 HOH B 1 2001 2001 HOH HOH . 
K 5 HOH B 2 2002 2002 HOH HOH . 
K 5 HOH B 3 2003 2003 HOH HOH . 
K 5 HOH B 4 2004 2004 HOH HOH . 
K 5 HOH B 5 2005 2005 HOH HOH . 
K 5 HOH B 6 2006 2006 HOH HOH . 
K 5 HOH B 7 2007 2007 HOH HOH . 
K 5 HOH B 8 2008 2008 HOH HOH . 
K 5 HOH B 9 2009 2009 HOH HOH . 
K 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH B 11 2011 2011 HOH HOH . 
K 5 HOH B 12 2012 2012 HOH HOH . 
K 5 HOH B 13 2013 2013 HOH HOH . 
K 5 HOH B 14 2014 2014 HOH HOH . 
K 5 HOH B 15 2015 2015 HOH HOH . 
K 5 HOH B 16 2016 2016 HOH HOH . 
K 5 HOH B 17 2017 2017 HOH HOH . 
K 5 HOH B 18 2018 2018 HOH HOH . 
K 5 HOH B 19 2019 2019 HOH HOH . 
K 5 HOH B 20 2020 2020 HOH HOH . 
K 5 HOH B 21 2021 2021 HOH HOH . 
K 5 HOH B 22 2022 2022 HOH HOH . 
K 5 HOH B 23 2023 2023 HOH HOH . 
K 5 HOH B 24 2024 2024 HOH HOH . 
K 5 HOH B 25 2025 2025 HOH HOH . 
K 5 HOH B 26 2026 2026 HOH HOH . 
K 5 HOH B 27 2027 2027 HOH HOH . 
K 5 HOH B 28 2028 2028 HOH HOH . 
K 5 HOH B 29 2029 2029 HOH HOH . 
K 5 HOH B 30 2030 2030 HOH HOH . 
K 5 HOH B 31 2031 2031 HOH HOH . 
K 5 HOH B 32 2032 2032 HOH HOH . 
K 5 HOH B 33 2033 2033 HOH HOH . 
K 5 HOH B 34 2034 2034 HOH HOH . 
K 5 HOH B 35 2035 2035 HOH HOH . 
K 5 HOH B 36 2036 2036 HOH HOH . 
K 5 HOH B 37 2037 2037 HOH HOH . 
K 5 HOH B 38 2038 2038 HOH HOH . 
K 5 HOH B 39 2039 2039 HOH HOH . 
K 5 HOH B 40 2040 2040 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAE K2Y . . . D 3 -19.106 26.279 54.077 1 55.5 ? OAE K2Y 1568 A 1 
HETATM 2 P PAW K2Y . . . D 3 -18.051 26.413 52.877 1 56.5 ? PAW K2Y 1568 A 1 
HETATM 3 O OAF K2Y . . . D 3 -17.318 24.974 52.809 1 57.41 ? OAF K2Y 1568 A 1 
HETATM 4 O OAA K2Y . . . D 3 -17.084 27.512 53.097 1 54.81 ? OAA K2Y 1568 A 1 
HETATM 5 O OAO K2Y . . . D 3 -18.907 26.586 51.511 1 58.12 ? OAO K2Y 1568 A 1 
HETATM 6 C CAS K2Y . . . D 3 -19.55 25.526 50.93 1 57.9 ? CAS K2Y 1568 A 1 
HETATM 7 C CAM K2Y . . . D 3 -20.216 24.539 51.691 1 59.61 ? CAM K2Y 1568 A 1 
HETATM 8 C CAT K2Y . . . D 3 -20.894 23.469 51.044 1 59.93 ? CAT K2Y 1568 A 1 
HETATM 9 O OAP K2Y . . . D 3 -21.576 22.509 51.775 1 59.19 ? OAP K2Y 1568 A 1 
HETATM 10 P PAX K2Y . . . D 3 -20.881 21.701 53.01 1 58.24 ? PAX K2Y 1568 A 1 
HETATM 11 O OAG K2Y . . . D 3 -21.56 20.247 53.047 1 56.86 ? OAG K2Y 1568 A 1 
HETATM 12 O OAH K2Y . . . D 3 -19.304 21.525 52.688 1 58.46 ? OAH K2Y 1568 A 1 
HETATM 13 O OAB K2Y . . . D 3 -21.08 22.418 54.291 1 58.72 ? OAB K2Y 1568 A 1 
HETATM 14 C CAV K2Y . . . D 3 -20.937 23.449 49.629 1 59.67 ? CAV K2Y 1568 A 1 
HETATM 15 O OAR K2Y . . . D 3 -21.645 22.496 48.978 1 59.98 ? OAR K2Y 1568 A 1 
HETATM 16 P PAZ K2Y . . . D 3 -23.147 22.941 48.588 1 60.5 ? PAZ K2Y 1568 A 1 
HETATM 17 O OAK K2Y . . . D 3 -23.529 24.317 49.348 1 61.14 ? OAK K2Y 1568 A 1 
HETATM 18 O OAL K2Y . . . D 3 -23.09 23.258 47 1 60.83 ? OAL K2Y 1568 A 1 
HETATM 19 O OAD K2Y . . . D 3 -24.116 21.869 48.908 1 59.85 ? OAD K2Y 1568 A 1 
HETATM 20 C CAN K2Y . . . D 3 -20.323 24.465 48.867 1 59.08 ? CAN K2Y 1568 A 1 
HETATM 21 C CAU K2Y . . . D 3 -19.644 25.519 49.51 1 57.12 ? CAU K2Y 1568 A 1 
HETATM 22 O OAQ K2Y . . . D 3 -19.006 26.503 48.778 1 54.61 ? OAQ K2Y 1568 A 1 
HETATM 23 P PAY K2Y . . . D 3 -19.9 27.351 47.701 1 50.66 ? PAY K2Y 1568 A 1 
HETATM 24 O OAI K2Y . . . D 3 -21.448 27.398 48.15 1 50.41 ? OAI K2Y 1568 A 1 
HETATM 25 O OAJ K2Y . . . D 3 -19.271 28.831 47.807 1 49.14 ? OAJ K2Y 1568 A 1 
HETATM 26 O OAC K2Y . . . D 3 -19.778 26.85 46.32 1 48.2 ? OAC K2Y 1568 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#