data_5A7Y # _model_server_result.job_id FevP8p8JODm9G-W0G5ipqg _model_server_result.datetime_utc '2025-03-09 02:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1291}' # _entry.id 5A7Y # _exptl.entry_id 5A7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A7Y _cell.length_a 95.14 _cell.length_b 101.09 _cell.length_c 66.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 299 n n N HN1 SAH sing 300 n n N HN2 SAH sing 301 n n CA CB SAH sing 302 n n CA C SAH sing 303 n n CA HA SAH sing 304 n n CB CG SAH sing 305 n n CB HB1 SAH sing 306 n n CB HB2 SAH sing 307 n n CG SD SAH sing 308 n n CG HG1 SAH sing 309 n n CG HG2 SAH sing 310 n n SD C5' SAH sing 311 n n C O SAH doub 312 n n C OXT SAH sing 313 n n OXT HXT SAH sing 314 n n C5' C4' SAH sing 315 n n C5' "H5'1" SAH sing 316 n n C5' "H5'2" SAH sing 317 n n C4' O4' SAH sing 318 n n C4' C3' SAH sing 319 n n C4' H4' SAH sing 320 n n O4' C1' SAH sing 321 n n C3' O3' SAH sing 322 n n C3' C2' SAH sing 323 n n C3' H3' SAH sing 324 n n O3' HO3' SAH sing 325 n n C2' O2' SAH sing 326 n n C2' C1' SAH sing 327 n n C2' H2' SAH sing 328 n n O2' HO2' SAH sing 329 n n C1' N9 SAH sing 330 n n C1' H1' SAH sing 331 n n N9 C8 SAH sing 332 n y N9 C4 SAH sing 333 n y C8 N7 SAH doub 334 n y C8 H8 SAH sing 335 n n N7 C5 SAH sing 336 n y C5 C6 SAH sing 337 n y C5 C4 SAH doub 338 n y C6 N6 SAH sing 339 n n C6 N1 SAH doub 340 n y N6 HN61 SAH sing 341 n n N6 HN62 SAH sing 342 n n N1 C2 SAH sing 343 n y C2 N3 SAH doub 344 n y C2 H2 SAH sing 345 n n N3 C4 SAH sing 346 n y # _atom_sites.entry_id 5A7Y _atom_sites.fract_transf_matrix[1][1] 0.010511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 1291 1291 SAH SAH . D 3 PEG A 1 1292 1292 PEG PEG . E 2 SAH B 1 1291 1291 SAH SAH . F 3 PEG B 1 1292 1292 PEG PEG . G 4 ACT B 1 1293 1293 ACT ACT . H 4 ACT B 1 1294 1294 ACT ACT . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 40.619 11.3 58.595 1 74.46 ? N SAH 1291 B 1 HETATM 2 C CA SAH . . . E 2 41.405 11.579 59.844 1 77.34 ? CA SAH 1291 B 1 HETATM 3 C CB SAH . . . E 2 41.537 13.094 60.032 1 65.36 ? CB SAH 1291 B 1 HETATM 4 C CG SAH . . . E 2 42.801 13.606 59.352 1 56.71 ? CG SAH 1291 B 1 HETATM 5 S SD SAH . . . E 2 42.897 15.37 59.406 1 73.29 ? SD SAH 1291 B 1 HETATM 6 C C SAH . . . E 2 40.743 10.903 61.029 1 83.8 ? C SAH 1291 B 1 HETATM 7 O O SAH . . . E 2 41.324 9.989 61.636 1 80.65 ? O SAH 1291 B 1 HETATM 8 O OXT SAH . . . E 2 39.604 11.216 61.404 1 68.21 ? OXT SAH 1291 B 1 HETATM 9 C C5' SAH . . . E 2 44.553 15.65 59.977 1 59.48 ? C5' SAH 1291 B 1 HETATM 10 C C4' SAH . . . E 2 44.655 15.663 61.502 1 42.18 ? C4' SAH 1291 B 1 HETATM 11 O O4' SAH . . . E 2 44.321 16.982 61.916 1 43.7 ? O4' SAH 1291 B 1 HETATM 12 C C3' SAH . . . E 2 43.73 14.725 62.242 1 37.81 ? C3' SAH 1291 B 1 HETATM 13 O O3' SAH . . . E 2 44.279 13.478 62.675 1 45.53 ? O3' SAH 1291 B 1 HETATM 14 C C2' SAH . . . E 2 43.311 15.511 63.429 1 41.2 ? C2' SAH 1291 B 1 HETATM 15 O O2' SAH . . . E 2 44.213 15.352 64.504 1 47.24 ? O2' SAH 1291 B 1 HETATM 16 C C1' SAH . . . E 2 43.448 16.929 63.055 1 44.17 ? C1' SAH 1291 B 1 HETATM 17 N N9 SAH . . . E 2 42.146 17.605 62.799 1 59.77 ? N9 SAH 1291 B 1 HETATM 18 C C8 SAH . . . E 2 41.76 18.104 61.624 1 68.08 ? C8 SAH 1291 B 1 HETATM 19 N N7 SAH . . . E 2 40.579 18.74 61.731 1 65.68 ? N7 SAH 1291 B 1 HETATM 20 C C5 SAH . . . E 2 40.189 18.665 62.987 1 63.77 ? C5 SAH 1291 B 1 HETATM 21 C C6 SAH . . . E 2 39.03 19.124 63.748 1 62.52 ? C6 SAH 1291 B 1 HETATM 22 N N6 SAH . . . E 2 38.042 19.803 63.162 1 53.75 ? N6 SAH 1291 B 1 HETATM 23 N N1 SAH . . . E 2 39.005 18.871 65.061 1 79.41 ? N1 SAH 1291 B 1 HETATM 24 C C2 SAH . . . E 2 39.99 18.193 65.66 1 66.15 ? C2 SAH 1291 B 1 HETATM 25 N N3 SAH . . . E 2 41.059 17.726 65.018 1 64.77 ? N3 SAH 1291 B 1 HETATM 26 C C4 SAH . . . E 2 41.224 17.93 63.697 1 67.05 ? C4 SAH 1291 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #