data_5A81 # _model_server_result.job_id UZHJUsPaRen21prwDS1FSw _model_server_result.datetime_utc '2025-08-29 22:10:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2111}' # _entry.id 5A81 # _exptl.entry_id 5A81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4R)-3-(cyclohexylmethoxy)piperidin-4-yl]amino}-3-methyl-1,2-dihydro-1,7-naphthyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A81 _cell.length_a 79.54 _cell.length_b 79.54 _cell.length_c 138.22 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N4 O2' _chem_comp.formula_weight 370.489 _chem_comp.id 78J _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4R)-3-(cyclohexylmethoxy)piperidin-4-yl]amino}-3-methyl-1,2-dihydro-1,7-naphthyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C05 78J sing 1 n n C05 C06 78J doub 2 n n C05 C56 78J sing 3 n n C06 C08 78J sing 4 n n C08 C09 78J doub 5 n y C08 C53 78J sing 6 n y C09 C11 78J sing 7 n y C11 N13 78J doub 8 n y N13 C14 78J sing 9 n y C14 N15 78J sing 10 n n C14 C53 78J doub 11 n y N15 C17 78J sing 12 n n C17 C19 78J sing 13 n n C17 C30 78J sing 14 n n C19 C22 78J sing 15 n n C22 N25 78J sing 16 n n N25 C27 78J sing 17 n n C27 C30 78J sing 18 n n C30 O32 78J sing 19 n n O32 C33 78J sing 20 n n C33 C36 78J sing 21 n n C36 C38 78J sing 22 n n C36 C50 78J sing 23 n n C38 C41 78J sing 24 n n C41 C44 78J sing 25 n n C44 C47 78J sing 26 n n C47 C50 78J sing 27 n n C53 N54 78J sing 28 n n N54 C56 78J sing 29 n n C56 O57 78J doub 30 n n C01 H011 78J sing 31 n n C01 H012 78J sing 32 n n C01 H013 78J sing 33 n n C06 H06 78J sing 34 n n C09 H09 78J sing 35 n n C11 H11 78J sing 36 n n N15 H15 78J sing 37 n n C17 H17 78J sing 38 n n C19 H191 78J sing 39 n n C19 H192 78J sing 40 n n C30 H30 78J sing 41 n n C22 H221 78J sing 42 n n C22 H222 78J sing 43 n n N25 H25 78J sing 44 n n C27 H271 78J sing 45 n n C27 H272 78J sing 46 n n C33 H331 78J sing 47 n n C33 H332 78J sing 48 n n C36 H36 78J sing 49 n n C38 H381 78J sing 50 n n C38 H382 78J sing 51 n n C50 H501 78J sing 52 n n C50 H502 78J sing 53 n n C41 H411 78J sing 54 n n C41 H412 78J sing 55 n n C44 H441 78J sing 56 n n C44 H442 78J sing 57 n n C47 H471 78J sing 58 n n C47 H472 78J sing 59 n n N54 H54 78J sing 60 n n # _atom_sites.entry_id 5A81 _atom_sites.fract_transf_matrix[1][1] 0.012572 _atom_sites.fract_transf_matrix[1][2] 0.007259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2109 2109 EDO EDO . C 2 EDO A 1 2110 2110 EDO EDO . D 3 78J A 1 2111 2111 78J 78J . E 4 SO4 A 1 2112 2112 SO4 SO4 . F 4 SO4 A 1 2113 2113 SO4 SO4 . G 5 HOH A 1 3001 3001 HOH HOH . G 5 HOH A 2 3002 3002 HOH HOH . G 5 HOH A 3 3003 3003 HOH HOH . G 5 HOH A 4 3004 3004 HOH HOH . G 5 HOH A 5 3005 3005 HOH HOH . G 5 HOH A 6 3006 3006 HOH HOH . G 5 HOH A 7 3007 3007 HOH HOH . G 5 HOH A 8 3008 3008 HOH HOH . G 5 HOH A 9 3009 3009 HOH HOH . G 5 HOH A 10 3010 3010 HOH HOH . G 5 HOH A 11 3011 3011 HOH HOH . G 5 HOH A 12 3012 3012 HOH HOH . G 5 HOH A 13 3013 3013 HOH HOH . G 5 HOH A 14 3014 3014 HOH HOH . G 5 HOH A 15 3015 3015 HOH HOH . G 5 HOH A 16 3016 3016 HOH HOH . G 5 HOH A 17 3017 3017 HOH HOH . G 5 HOH A 18 3018 3018 HOH HOH . G 5 HOH A 19 3019 3019 HOH HOH . G 5 HOH A 20 3020 3020 HOH HOH . G 5 HOH A 21 3021 3021 HOH HOH . G 5 HOH A 22 3022 3022 HOH HOH . G 5 HOH A 23 3023 3023 HOH HOH . G 5 HOH A 24 3024 3024 HOH HOH . G 5 HOH A 25 3025 3025 HOH HOH . G 5 HOH A 26 3026 3026 HOH HOH . G 5 HOH A 27 3027 3027 HOH HOH . G 5 HOH A 28 3028 3028 HOH HOH . G 5 HOH A 29 3029 3029 HOH HOH . G 5 HOH A 30 3030 3030 HOH HOH . G 5 HOH A 31 3031 3031 HOH HOH . G 5 HOH A 32 3032 3032 HOH HOH . G 5 HOH A 33 3033 3033 HOH HOH . G 5 HOH A 34 3034 3034 HOH HOH . G 5 HOH A 35 3035 3035 HOH HOH . G 5 HOH A 36 3036 3036 HOH HOH . G 5 HOH A 37 3037 3037 HOH HOH . G 5 HOH A 38 3038 3038 HOH HOH . G 5 HOH A 39 3039 3039 HOH HOH . G 5 HOH A 40 3040 3040 HOH HOH . G 5 HOH A 41 3041 3041 HOH HOH . G 5 HOH A 42 3042 3042 HOH HOH . G 5 HOH A 43 3043 3043 HOH HOH . G 5 HOH A 44 3044 3044 HOH HOH . G 5 HOH A 45 3045 3045 HOH HOH . G 5 HOH A 46 3046 3046 HOH HOH . G 5 HOH A 47 3047 3047 HOH HOH . G 5 HOH A 48 3048 3048 HOH HOH . G 5 HOH A 49 3049 3049 HOH HOH . G 5 HOH A 50 3050 3050 HOH HOH . G 5 HOH A 51 3051 3051 HOH HOH . G 5 HOH A 52 3052 3052 HOH HOH . G 5 HOH A 53 3053 3053 HOH HOH . G 5 HOH A 54 3054 3054 HOH HOH . G 5 HOH A 55 3055 3055 HOH HOH . G 5 HOH A 56 3056 3056 HOH HOH . G 5 HOH A 57 3057 3057 HOH HOH . G 5 HOH A 58 3058 3058 HOH HOH . G 5 HOH A 59 3059 3059 HOH HOH . G 5 HOH A 60 3060 3060 HOH HOH . G 5 HOH A 61 3061 3061 HOH HOH . G 5 HOH A 62 3062 3062 HOH HOH . G 5 HOH A 63 3063 3063 HOH HOH . G 5 HOH A 64 3064 3064 HOH HOH . G 5 HOH A 65 3065 3065 HOH HOH . G 5 HOH A 66 3066 3066 HOH HOH . G 5 HOH A 67 3067 3067 HOH HOH . G 5 HOH A 68 3068 3068 HOH HOH . G 5 HOH A 69 3069 3069 HOH HOH . G 5 HOH A 70 3070 3070 HOH HOH . G 5 HOH A 71 3071 3071 HOH HOH . G 5 HOH A 72 3072 3072 HOH HOH . G 5 HOH A 73 3073 3073 HOH HOH . G 5 HOH A 74 3074 3074 HOH HOH . G 5 HOH A 75 3075 3075 HOH HOH . G 5 HOH A 76 3076 3076 HOH HOH . G 5 HOH A 77 3077 3077 HOH HOH . G 5 HOH A 78 3078 3078 HOH HOH . G 5 HOH A 79 3079 3079 HOH HOH . G 5 HOH A 80 3080 3080 HOH HOH . G 5 HOH A 81 3081 3081 HOH HOH . G 5 HOH A 82 3082 3082 HOH HOH . G 5 HOH A 83 3083 3083 HOH HOH . G 5 HOH A 84 3084 3084 HOH HOH . G 5 HOH A 85 3085 3085 HOH HOH . G 5 HOH A 86 3086 3086 HOH HOH . G 5 HOH A 87 3087 3087 HOH HOH . G 5 HOH A 88 3088 3088 HOH HOH . G 5 HOH A 89 3089 3089 HOH HOH . G 5 HOH A 90 3090 3090 HOH HOH . G 5 HOH A 91 3091 3091 HOH HOH . G 5 HOH A 92 3092 3092 HOH HOH . G 5 HOH A 93 3093 3093 HOH HOH . G 5 HOH A 94 3094 3094 HOH HOH . G 5 HOH A 95 3095 3095 HOH HOH . G 5 HOH A 96 3096 3096 HOH HOH . G 5 HOH A 97 3097 3097 HOH HOH . G 5 HOH A 98 3098 3098 HOH HOH . G 5 HOH A 99 3099 3099 HOH HOH . G 5 HOH A 100 3100 3100 HOH HOH . G 5 HOH A 101 3101 3101 HOH HOH . G 5 HOH A 102 3102 3102 HOH HOH . G 5 HOH A 103 3103 3103 HOH HOH . G 5 HOH A 104 3104 3104 HOH HOH . G 5 HOH A 105 3105 3105 HOH HOH . G 5 HOH A 106 3106 3106 HOH HOH . G 5 HOH A 107 3107 3107 HOH HOH . G 5 HOH A 108 3108 3108 HOH HOH . G 5 HOH A 109 3109 3109 HOH HOH . G 5 HOH A 110 3110 3110 HOH HOH . G 5 HOH A 111 3111 3111 HOH HOH . G 5 HOH A 112 3112 3112 HOH HOH . G 5 HOH A 113 3113 3113 HOH HOH . G 5 HOH A 114 3114 3114 HOH HOH . G 5 HOH A 115 3115 3115 HOH HOH . G 5 HOH A 116 3116 3116 HOH HOH . G 5 HOH A 117 3117 3117 HOH HOH . G 5 HOH A 118 3118 3118 HOH HOH . G 5 HOH A 119 3119 3119 HOH HOH . G 5 HOH A 120 3120 3120 HOH HOH . G 5 HOH A 121 3121 3121 HOH HOH . G 5 HOH A 122 3122 3122 HOH HOH . G 5 HOH A 123 3123 3123 HOH HOH . G 5 HOH A 124 3124 3124 HOH HOH . G 5 HOH A 125 3125 3125 HOH HOH . G 5 HOH A 126 3126 3126 HOH HOH . G 5 HOH A 127 3127 3127 HOH HOH . G 5 HOH A 128 3128 3128 HOH HOH . G 5 HOH A 129 3129 3129 HOH HOH . G 5 HOH A 130 3130 3130 HOH HOH . G 5 HOH A 131 3131 3131 HOH HOH . G 5 HOH A 132 3132 3132 HOH HOH . G 5 HOH A 133 3133 3133 HOH HOH . G 5 HOH A 134 3134 3134 HOH HOH . G 5 HOH A 135 3135 3135 HOH HOH . G 5 HOH A 136 3136 3136 HOH HOH . G 5 HOH A 137 3137 3137 HOH HOH . G 5 HOH A 138 3138 3138 HOH HOH . G 5 HOH A 139 3139 3139 HOH HOH . G 5 HOH A 140 3140 3140 HOH HOH . G 5 HOH A 141 3141 3141 HOH HOH . G 5 HOH A 142 3142 3142 HOH HOH . G 5 HOH A 143 3143 3143 HOH HOH . G 5 HOH A 144 3144 3144 HOH HOH . G 5 HOH A 145 3145 3145 HOH HOH . G 5 HOH A 146 3146 3146 HOH HOH . G 5 HOH A 147 3147 3147 HOH HOH . G 5 HOH A 148 3148 3148 HOH HOH . G 5 HOH A 149 3149 3149 HOH HOH . G 5 HOH A 150 3150 3150 HOH HOH . G 5 HOH A 151 3151 3151 HOH HOH . G 5 HOH A 152 3152 3152 HOH HOH . G 5 HOH A 153 3153 3153 HOH HOH . G 5 HOH A 154 3154 3154 HOH HOH . G 5 HOH A 155 3155 3155 HOH HOH . G 5 HOH A 156 3156 3156 HOH HOH . G 5 HOH A 157 3157 3157 HOH HOH . G 5 HOH A 158 3158 3158 HOH HOH . G 5 HOH A 159 3159 3159 HOH HOH . G 5 HOH A 160 3160 3160 HOH HOH . G 5 HOH A 161 3161 3161 HOH HOH . G 5 HOH A 162 3162 3162 HOH HOH . G 5 HOH A 163 3163 3163 HOH HOH . G 5 HOH A 164 3164 3164 HOH HOH . G 5 HOH A 165 3165 3165 HOH HOH . G 5 HOH A 166 3166 3166 HOH HOH . G 5 HOH A 167 3167 3167 HOH HOH . G 5 HOH A 168 3168 3168 HOH HOH . G 5 HOH A 169 3169 3169 HOH HOH . G 5 HOH A 170 3170 3170 HOH HOH . G 5 HOH A 171 3171 3171 HOH HOH . G 5 HOH A 172 3172 3172 HOH HOH . G 5 HOH A 173 3173 3173 HOH HOH . G 5 HOH A 174 3174 3174 HOH HOH . G 5 HOH A 175 3175 3175 HOH HOH . G 5 HOH A 176 3176 3176 HOH HOH . G 5 HOH A 177 3177 3177 HOH HOH . G 5 HOH A 178 3178 3178 HOH HOH . G 5 HOH A 179 3179 3179 HOH HOH . G 5 HOH A 180 3180 3180 HOH HOH . G 5 HOH A 181 3181 3181 HOH HOH . G 5 HOH A 182 3182 3182 HOH HOH . G 5 HOH A 183 3183 3183 HOH HOH . G 5 HOH A 184 3184 3184 HOH HOH . G 5 HOH A 185 3185 3185 HOH HOH . G 5 HOH A 186 3186 3186 HOH HOH . G 5 HOH A 187 3187 3187 HOH HOH . G 5 HOH A 188 3188 3188 HOH HOH . G 5 HOH A 189 3189 3189 HOH HOH . G 5 HOH A 190 3190 3190 HOH HOH . G 5 HOH A 191 3191 3191 HOH HOH . G 5 HOH A 192 3192 3192 HOH HOH . G 5 HOH A 193 3193 3193 HOH HOH . G 5 HOH A 194 3194 3194 HOH HOH . G 5 HOH A 195 3195 3195 HOH HOH . G 5 HOH A 196 3196 3196 HOH HOH . G 5 HOH A 197 3197 3197 HOH HOH . G 5 HOH A 198 3198 3198 HOH HOH . G 5 HOH A 199 3199 3199 HOH HOH . G 5 HOH A 200 3200 3200 HOH HOH . G 5 HOH A 201 3201 3201 HOH HOH . G 5 HOH A 202 3202 3202 HOH HOH . G 5 HOH A 203 3203 3203 HOH HOH . G 5 HOH A 204 3204 3204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 78J . . . D 3 -23.605 44.82 9.96 1 36.47 ? C01 78J 2111 A 1 HETATM 2 C C05 78J . . . D 3 -24.932 44.821 10.673 1 35.75 ? C05 78J 2111 A 1 HETATM 3 C C06 78J . . . D 3 -25.835 45.758 10.344 1 36.39 ? C06 78J 2111 A 1 HETATM 4 C C08 78J . . . D 3 -27.11 45.788 11.009 1 36.04 ? C08 78J 2111 A 1 HETATM 5 C C09 78J . . . D 3 -28.108 46.726 10.742 1 37.43 ? C09 78J 2111 A 1 HETATM 6 C C11 78J . . . D 3 -29.289 46.64 11.448 1 36.98 ? C11 78J 2111 A 1 HETATM 7 N N13 78J . . . D 3 -29.542 45.71 12.386 1 37.28 ? N13 78J 2111 A 1 HETATM 8 C C14 78J . . . D 3 -28.613 44.776 12.682 1 36.95 ? C14 78J 2111 A 1 HETATM 9 N N15 78J . . . D 3 -28.924 43.875 13.639 1 37.2 ? N15 78J 2111 A 1 HETATM 10 C C17 78J . . . D 3 -30.259 43.543 14.114 1 35.94 ? C17 78J 2111 A 1 HETATM 11 C C19 78J . . . D 3 -30.204 43.04 15.554 1 36.3 ? C19 78J 2111 A 1 HETATM 12 C C22 78J . . . D 3 -31.589 42.652 16.026 1 36.65 ? C22 78J 2111 A 1 HETATM 13 N N25 78J . . . D 3 -32.135 41.597 15.167 1 33.28 ? N25 78J 2111 A 1 HETATM 14 C C27 78J . . . D 3 -32.275 42.077 13.793 1 35.87 ? C27 78J 2111 A 1 HETATM 15 C C30 78J . . . D 3 -30.925 42.497 13.232 1 36.01 ? C30 78J 2111 A 1 HETATM 16 O O32 78J . . . D 3 -31.105 43.055 11.927 1 36.34 ? O32 78J 2111 A 1 HETATM 17 C C33 78J . . . D 3 -31.2 42.104 10.863 1 39.66 ? C33 78J 2111 A 1 HETATM 18 C C36 78J . . . D 3 -31.218 42.815 9.533 1 40.73 ? C36 78J 2111 A 1 HETATM 19 C C38 78J . . . D 3 -29.896 43.531 9.287 1 41.84 ? C38 78J 2111 A 1 HETATM 20 C C41 78J . . . D 3 -29.842 44.205 7.92 1 42.25 ? C41 78J 2111 A 1 HETATM 21 C C44 78J . . . D 3 -30.103 43.209 6.808 1 42.64 ? C44 78J 2111 A 1 HETATM 22 C C47 78J . . . D 3 -31.419 42.483 7.025 1 41.97 ? C47 78J 2111 A 1 HETATM 23 C C50 78J . . . D 3 -31.465 41.824 8.402 1 41.1 ? C50 78J 2111 A 1 HETATM 24 C C53 78J . . . D 3 -27.374 44.82 11.985 1 34.7 ? C53 78J 2111 A 1 HETATM 25 N N54 78J . . . D 3 -26.4 43.88 12.276 1 35.2 ? N54 78J 2111 A 1 HETATM 26 C C56 78J . . . D 3 -25.182 43.81 11.691 1 34.25 ? C56 78J 2111 A 1 HETATM 27 O O57 78J . . . D 3 -24.386 42.932 12.02 1 32.73 ? O57 78J 2111 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 499 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #