data_5A8B
#
_model_server_result.job_id            CCpeyY3glncSFSC6sSwQJA 
_model_server_result.datetime_utc      '2024-11-28 09:10:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":500}' 
#
_entry.id    5A8B 
#
_exptl.entry_id    5A8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.73 
_cell.angle_gamma         90 
_cell.entry_id            5A8B 
_cell.length_a            56.391 
_cell.length_b            75.55 
_cell.length_c            77.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     5A8B 
_atom_sites.fract_transf_matrix[1][1]    0.017733 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 500 500 FMN FMN . 
F 3 CL B 1 452 452 CL CL . 
G 2 FMN B 1 500 500 FMN FMN . 
H 2 FMN C 1 500 500 FMN FMN . 
I 3 CL D 1 451 451 CL CL . 
J 2 FMN D 1 500 500 FMN FMN . 
K 4 GOL D 1 511 511 GOL GOL . 
L 5 HOH A 1 2001 2001 HOH HOH . 
L 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH A 3 2003 2003 HOH HOH . 
L 5 HOH A 4 2004 2004 HOH HOH . 
L 5 HOH A 5 2005 2005 HOH HOH . 
L 5 HOH A 6 2006 2006 HOH HOH . 
L 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH B 1 2001 2001 HOH HOH . 
M 5 HOH B 2 2002 2002 HOH HOH . 
M 5 HOH B 3 2003 2003 HOH HOH . 
M 5 HOH B 4 2004 2004 HOH HOH . 
M 5 HOH B 5 2005 2005 HOH HOH . 
M 5 HOH B 6 2006 2006 HOH HOH . 
M 5 HOH B 7 2007 2007 HOH HOH . 
M 5 HOH B 8 2008 2008 HOH HOH . 
M 5 HOH B 9 2009 2009 HOH HOH . 
M 5 HOH B 10 2010 2010 HOH HOH . 
M 5 HOH B 11 2011 2011 HOH HOH . 
M 5 HOH B 12 2012 2012 HOH HOH . 
N 5 HOH C 1 2001 2001 HOH HOH . 
N 5 HOH C 2 2002 2002 HOH HOH . 
N 5 HOH C 3 2003 2003 HOH HOH . 
N 5 HOH C 4 2004 2004 HOH HOH . 
N 5 HOH C 5 2005 2005 HOH HOH . 
N 5 HOH C 6 2006 2006 HOH HOH . 
N 5 HOH C 7 2007 2007 HOH HOH . 
N 5 HOH C 8 2008 2008 HOH HOH . 
O 5 HOH D 1 2001 2001 HOH HOH . 
O 5 HOH D 2 2002 2002 HOH HOH . 
O 5 HOH D 3 2003 2003 HOH HOH . 
O 5 HOH D 4 2004 2004 HOH HOH . 
O 5 HOH D 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 2 65.488 -13.261 31.328 1 16.8 ? N1 FMN 500 A 1 
HETATM 2 C C2 FMN . . . E 2 66.365 -14.311 31.558 1 19.71 ? C2 FMN 500 A 1 
HETATM 3 O O2 FMN . . . E 2 67.225 -14.588 30.709 1 24.95 ? O2 FMN 500 A 1 
HETATM 4 N N3 FMN . . . E 2 66.292 -15.052 32.73 1 16.3 ? N3 FMN 500 A 1 
HETATM 5 C C4 FMN . . . E 2 65.344 -14.743 33.686 1 20.13 ? C4 FMN 500 A 1 
HETATM 6 O O4 FMN . . . E 2 65.276 -15.405 34.73 1 16.63 ? O4 FMN 500 A 1 
HETATM 7 C C4A FMN . . . E 2 64.465 -13.684 33.453 1 16.73 ? C4A FMN 500 A 1 
HETATM 8 N N5 FMN . . . E 2 63.515 -13.371 34.387 1 16 ? N5 FMN 500 A 1 
HETATM 9 C C5A FMN . . . E 2 62.634 -12.33 34.177 1 20.41 ? C5A FMN 500 A 1 
HETATM 10 C C6 FMN . . . E 2 61.673 -12.038 35.147 1 18.5 ? C6 FMN 500 A 1 
HETATM 11 C C7 FMN . . . E 2 60.761 -11.002 34.965 1 21.89 ? C7 FMN 500 A 1 
HETATM 12 C C7M FMN . . . E 2 59.732 -10.721 36.035 1 17.24 ? C7M FMN 500 A 1 
HETATM 13 C C8 FMN . . . E 2 60.824 -10.242 33.787 1 21.8 ? C8 FMN 500 A 1 
HETATM 14 C C8M FMN . . . E 2 59.851 -9.108 33.558 1 18.2 ? C8M FMN 500 A 1 
HETATM 15 C C9 FMN . . . E 2 61.788 -10.544 32.817 1 19.7 ? C9 FMN 500 A 1 
HETATM 16 C C9A FMN . . . E 2 62.696 -11.589 32.999 1 20.56 ? C9A FMN 500 A 1 
HETATM 17 N N10 FMN . . . E 2 63.658 -11.905 32.048 1 19.79 ? N10 FMN 500 A 1 
HETATM 18 C C10 FMN . . . E 2 64.533 -12.949 32.276 1 18.49 ? C10 FMN 500 A 1 
HETATM 19 C C1' FMN . . . E 2 63.763 -11.17 30.753 1 18.22 ? C1' FMN 500 A 1 
HETATM 20 C C2' FMN . . . E 2 64.662 -9.953 30.762 1 23.88 ? C2' FMN 500 A 1 
HETATM 21 O O2' FMN . . . E 2 64.489 -9.194 31.939 1 25.83 ? O2' FMN 500 A 1 
HETATM 22 C C3' FMN . . . E 2 64.272 -9.097 29.562 1 32.59 ? C3' FMN 500 A 1 
HETATM 23 O O3' FMN . . . E 2 62.869 -8.921 29.517 1 32.38 ? O3' FMN 500 A 1 
HETATM 24 C C4' FMN . . . E 2 64.72 -9.75 28.268 1 29.47 ? C4' FMN 500 A 1 
HETATM 25 O O4' FMN . . . E 2 66.091 -9.48 28.063 1 29.03 ? O4' FMN 500 A 1 
HETATM 26 C C5' FMN . . . E 2 63.917 -9.164 27.122 1 32.64 ? C5' FMN 500 A 1 
HETATM 27 O O5' FMN . . . E 2 64.16 -7.772 27.077 1 40.95 ? O5' FMN 500 A 1 
HETATM 28 P P FMN . . . E 2 65.256 -7.131 26.063 1 49.54 ? P FMN 500 A 1 
HETATM 29 O O1P FMN . . . E 2 65.212 -7.829 24.722 1 39.85 ? O1P FMN 500 A 1 
HETATM 30 O O2P FMN . . . E 2 66.648 -7.317 26.626 1 42.45 ? O2P FMN 500 A 1 
HETATM 31 O O3P FMN . . . E 2 64.931 -5.665 25.889 1 40.1 ? O3P FMN 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#