data_5A8B
#
_model_server_result.job_id            Z_a5J5eAhDzMsiW51qKWvA 
_model_server_result.datetime_utc      '2024-11-24 16:09:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    5A8B 
#
_exptl.entry_id    5A8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.73 
_cell.angle_gamma         90 
_cell.entry_id            5A8B 
_cell.length_a            56.391 
_cell.length_b            75.55 
_cell.length_c            77.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     5A8B 
_atom_sites.fract_transf_matrix[1][1]    0.017733 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 500 500 FMN FMN . 
F 3 CL B 1 452 452 CL CL . 
G 2 FMN B 1 500 500 FMN FMN . 
H 2 FMN C 1 500 500 FMN FMN . 
I 3 CL D 1 451 451 CL CL . 
J 2 FMN D 1 500 500 FMN FMN . 
K 4 GOL D 1 511 511 GOL GOL . 
L 5 HOH A 1 2001 2001 HOH HOH . 
L 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH A 3 2003 2003 HOH HOH . 
L 5 HOH A 4 2004 2004 HOH HOH . 
L 5 HOH A 5 2005 2005 HOH HOH . 
L 5 HOH A 6 2006 2006 HOH HOH . 
L 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH B 1 2001 2001 HOH HOH . 
M 5 HOH B 2 2002 2002 HOH HOH . 
M 5 HOH B 3 2003 2003 HOH HOH . 
M 5 HOH B 4 2004 2004 HOH HOH . 
M 5 HOH B 5 2005 2005 HOH HOH . 
M 5 HOH B 6 2006 2006 HOH HOH . 
M 5 HOH B 7 2007 2007 HOH HOH . 
M 5 HOH B 8 2008 2008 HOH HOH . 
M 5 HOH B 9 2009 2009 HOH HOH . 
M 5 HOH B 10 2010 2010 HOH HOH . 
M 5 HOH B 11 2011 2011 HOH HOH . 
M 5 HOH B 12 2012 2012 HOH HOH . 
N 5 HOH C 1 2001 2001 HOH HOH . 
N 5 HOH C 2 2002 2002 HOH HOH . 
N 5 HOH C 3 2003 2003 HOH HOH . 
N 5 HOH C 4 2004 2004 HOH HOH . 
N 5 HOH C 5 2005 2005 HOH HOH . 
N 5 HOH C 6 2006 2006 HOH HOH . 
N 5 HOH C 7 2007 2007 HOH HOH . 
N 5 HOH C 8 2008 2008 HOH HOH . 
O 5 HOH D 1 2001 2001 HOH HOH . 
O 5 HOH D 2 2002 2002 HOH HOH . 
O 5 HOH D 3 2003 2003 HOH HOH . 
O 5 HOH D 4 2004 2004 HOH HOH . 
O 5 HOH D 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . H 2 28.569 -37.853 18.302 1 23.25 ? N1 FMN 500 C 1 
HETATM 2 C C2 FMN . . . H 2 27.61 -38.793 18.683 1 24.53 ? C2 FMN 500 C 1 
HETATM 3 O O2 FMN . . . H 2 27.731 -39.497 19.687 1 22.89 ? O2 FMN 500 C 1 
HETATM 4 N N3 FMN . . . H 2 26.464 -38.969 17.937 1 25.54 ? N3 FMN 500 C 1 
HETATM 5 C C4 FMN . . . H 2 26.25 -38.221 16.813 1 20.95 ? C4 FMN 500 C 1 
HETATM 6 O O4 FMN . . . H 2 25.223 -38.404 16.17 1 17.01 ? O4 FMN 500 C 1 
HETATM 7 C C4A FMN . . . H 2 27.198 -37.279 16.428 1 20.73 ? C4A FMN 500 C 1 
HETATM 8 N N5 FMN . . . H 2 26.977 -36.543 15.298 1 21.56 ? N5 FMN 500 C 1 
HETATM 9 C C5A FMN . . . H 2 27.872 -35.609 14.86 1 19.94 ? C5A FMN 500 C 1 
HETATM 10 C C6 FMN . . . H 2 27.594 -34.889 13.704 1 21.46 ? C6 FMN 500 C 1 
HETATM 11 C C7 FMN . . . H 2 28.487 -33.941 13.232 1 21.65 ? C7 FMN 500 C 1 
HETATM 12 C C7M FMN . . . H 2 28.212 -33.156 11.98 1 18.6 ? C7M FMN 500 C 1 
HETATM 13 C C8 FMN . . . H 2 29.65 -33.722 13.942 1 20.4 ? C8 FMN 500 C 1 
HETATM 14 C C8M FMN . . . H 2 30.612 -32.694 13.441 1 23.04 ? C8M FMN 500 C 1 
HETATM 15 C C9 FMN . . . H 2 29.923 -34.446 15.099 1 22.62 ? C9 FMN 500 C 1 
HETATM 16 C C9A FMN . . . H 2 29.033 -35.404 15.575 1 21.98 ? C9A FMN 500 C 1 
HETATM 17 N N10 FMN . . . H 2 29.271 -36.134 16.734 1 21.23 ? N10 FMN 500 C 1 
HETATM 18 C C10 FMN . . . H 2 28.36 -37.087 17.159 1 23.33 ? C10 FMN 500 C 1 
HETATM 19 C C1' FMN . . . H 2 30.534 -35.947 17.507 1 21.09 ? C1' FMN 500 C 1 
HETATM 20 C C2' FMN . . . H 2 30.628 -34.737 18.435 1 24.98 ? C2' FMN 500 C 1 
HETATM 21 O O2' FMN . . . H 2 30.037 -33.58 17.879 1 26.96 ? O2' FMN 500 C 1 
HETATM 22 C C3' FMN . . . H 2 32.11 -34.488 18.713 1 22.94 ? C3' FMN 500 C 1 
HETATM 23 O O3' FMN . . . H 2 32.715 -33.99 17.538 1 23.13 ? O3' FMN 500 C 1 
HETATM 24 C C4' FMN . . . H 2 32.742 -35.816 19.141 1 23.01 ? C4' FMN 500 C 1 
HETATM 25 O O4' FMN . . . H 2 32.114 -36.265 20.325 1 28.84 ? O4' FMN 500 C 1 
HETATM 26 C C5' FMN . . . H 2 34.256 -35.795 19.349 1 24.19 ? C5' FMN 500 C 1 
HETATM 27 O O5' FMN . . . H 2 34.69 -34.547 19.852 1 29.56 ? O5' FMN 500 C 1 
HETATM 28 P P FMN . . . H 2 35.055 -34.38 21.405 1 27.69 ? P FMN 500 C 1 
HETATM 29 O O1P FMN . . . H 2 33.84 -34.793 22.215 1 22.39 ? O1P FMN 500 C 1 
HETATM 30 O O2P FMN . . . H 2 35.45 -32.956 21.71 1 23.66 ? O2P FMN 500 C 1 
HETATM 31 O O3P FMN . . . H 2 36.215 -35.308 21.673 1 28.67 ? O3P FMN 500 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#