data_5A8B
#
_model_server_result.job_id            Pu6wsFzGV6XDoaluUL9Kfg 
_model_server_result.datetime_utc      '2024-11-24 15:22:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a8b 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":511}' 
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_entry.id    5A8B 
#
_exptl.entry_id    5A8B 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.73 
_cell.angle_gamma         90 
_cell.entry_id            5A8B 
_cell.length_a            56.391 
_cell.length_b            75.55 
_cell.length_c            77.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5A8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 183 n n 
C1 C2 GOL sing 184 n n 
C1 H11 GOL sing 185 n n 
C1 H12 GOL sing 186 n n 
O1 HO1 GOL sing 187 n n 
C2 O2 GOL sing 188 n n 
C2 C3 GOL sing 189 n n 
C2 H2 GOL sing 190 n n 
O2 HO2 GOL sing 191 n n 
C3 O3 GOL sing 192 n n 
C3 H31 GOL sing 193 n n 
C3 H32 GOL sing 194 n n 
O3 HO3 GOL sing 195 n n 
#
_atom_sites.entry_id                     5A8B 
_atom_sites.fract_transf_matrix[1][1]    0.017733 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 500 500 FMN FMN . 
F 3 CL B 1 452 452 CL CL . 
G 2 FMN B 1 500 500 FMN FMN . 
H 2 FMN C 1 500 500 FMN FMN . 
I 3 CL D 1 451 451 CL CL . 
J 2 FMN D 1 500 500 FMN FMN . 
K 4 GOL D 1 511 511 GOL GOL . 
L 5 HOH A 1 2001 2001 HOH HOH . 
L 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH A 3 2003 2003 HOH HOH . 
L 5 HOH A 4 2004 2004 HOH HOH . 
L 5 HOH A 5 2005 2005 HOH HOH . 
L 5 HOH A 6 2006 2006 HOH HOH . 
L 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH B 1 2001 2001 HOH HOH . 
M 5 HOH B 2 2002 2002 HOH HOH . 
M 5 HOH B 3 2003 2003 HOH HOH . 
M 5 HOH B 4 2004 2004 HOH HOH . 
M 5 HOH B 5 2005 2005 HOH HOH . 
M 5 HOH B 6 2006 2006 HOH HOH . 
M 5 HOH B 7 2007 2007 HOH HOH . 
M 5 HOH B 8 2008 2008 HOH HOH . 
M 5 HOH B 9 2009 2009 HOH HOH . 
M 5 HOH B 10 2010 2010 HOH HOH . 
M 5 HOH B 11 2011 2011 HOH HOH . 
M 5 HOH B 12 2012 2012 HOH HOH . 
N 5 HOH C 1 2001 2001 HOH HOH . 
N 5 HOH C 2 2002 2002 HOH HOH . 
N 5 HOH C 3 2003 2003 HOH HOH . 
N 5 HOH C 4 2004 2004 HOH HOH . 
N 5 HOH C 5 2005 2005 HOH HOH . 
N 5 HOH C 6 2006 2006 HOH HOH . 
N 5 HOH C 7 2007 2007 HOH HOH . 
N 5 HOH C 8 2008 2008 HOH HOH . 
O 5 HOH D 1 2001 2001 HOH HOH . 
O 5 HOH D 2 2002 2002 HOH HOH . 
O 5 HOH D 3 2003 2003 HOH HOH . 
O 5 HOH D 4 2004 2004 HOH HOH . 
O 5 HOH D 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 26.63 -44.1 4.409 1 36 ? C1 GOL 511 D 1 
HETATM 2 O O1 GOL . . . K 4 27.136 -44.154 3.096 1 41.64 ? O1 GOL 511 D 1 
HETATM 3 C C2 GOL . . . K 4 25.186 -43.685 4.226 1 34.59 ? C2 GOL 511 D 1 
HETATM 4 O O2 GOL . . . K 4 25.143 -42.413 3.618 1 36.83 ? O2 GOL 511 D 1 
HETATM 5 C C3 GOL . . . K 4 24.456 -43.681 5.553 1 24.94 ? C3 GOL 511 D 1 
HETATM 6 O O3 GOL . . . K 4 23.07 -43.641 5.27 1 40.86 ? O3 GOL 511 D 1 
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_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#