data_5A8E
#
_model_server_result.job_id            -T5N5H1ZyQFzlyr5ZktxEA 
_model_server_result.datetime_utc      '2024-11-22 10:43:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a8e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2001}' 
#
_entry.id    5A8E 
#
_exptl.entry_id    5A8E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A8E 
_cell.length_a            53.019 
_cell.length_b            61.777 
_cell.length_c            95.561 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A8E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc1 A OD1 ASP 57 A ASP 87 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc2 A OG SER 98 A SER 128 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 A O CYS 162 A CYS 192 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc4 A O ASP 165 A ASP 195 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 A O CYS 168 A CYS 198 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 B NA NA . A NA 401 1_555 K O HOH . A HOH 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc7 B NA NA . A NA 401 1_555 K O HOH . A HOH 3014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 B NA NA . A NA 401 1_555 K O HOH . A HOH 3015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc9 C NA NA . A NA 402 1_555 K O HOH . A HOH 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc10 C NA NA . A NA 402 1_555 K O HOH . A HOH 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc11 C NA NA . A NA 402 1_555 K O HOH . A HOH 3022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 259 n n 
C10 C9 OLC doub 260 n n 
C10 C11 OLC sing 261 n n 
C9 C8 OLC sing 262 n n 
C17 C16 OLC sing 263 z n 
C11 C12 OLC sing 264 n n 
C8 C7 OLC sing 265 n n 
C24 C22 OLC sing 266 n n 
C24 O25 OLC sing 267 n n 
C16 C15 OLC sing 268 n n 
C12 C13 OLC sing 269 n n 
C7 C6 OLC sing 270 n n 
C15 C14 OLC sing 271 n n 
C13 C14 OLC sing 272 n n 
C6 C5 OLC sing 273 n n 
C5 C4 OLC sing 274 n n 
C4 C3 OLC sing 275 n n 
C3 C2 OLC sing 276 n n 
C2 C1 OLC sing 277 n n 
C21 C22 OLC sing 278 n n 
C21 O20 OLC sing 279 n n 
C1 O19 OLC doub 280 n n 
C1 O20 OLC sing 281 n n 
C22 O23 OLC sing 282 n n 
C18 H18 OLC sing 283 n n 
C18 H18A OLC sing 284 n n 
C18 H18B OLC sing 285 n n 
C10 H10 OLC sing 286 n n 
C9 H9 OLC sing 287 n n 
C17 H17 OLC sing 288 n n 
C17 H17A OLC sing 289 n n 
C11 H11 OLC sing 290 n n 
C11 H11A OLC sing 291 n n 
C8 H8 OLC sing 292 n n 
C8 H8A OLC sing 293 n n 
C24 H24 OLC sing 294 n n 
C24 H24A OLC sing 295 n n 
C16 H16 OLC sing 296 n n 
C16 H16A OLC sing 297 n n 
C12 H12 OLC sing 298 n n 
C12 H12A OLC sing 299 n n 
C7 H7 OLC sing 300 n n 
C7 H7A OLC sing 301 n n 
C15 H15 OLC sing 302 n n 
C15 H15A OLC sing 303 n n 
C13 H13 OLC sing 304 n n 
C13 H13A OLC sing 305 n n 
C6 H6 OLC sing 306 n n 
C6 H6A OLC sing 307 n n 
C14 H14 OLC sing 308 n n 
C14 H14A OLC sing 309 n n 
C5 H5 OLC sing 310 n n 
C5 H5A OLC sing 311 n n 
C4 H4 OLC sing 312 n n 
C4 H4A OLC sing 313 n n 
C3 H3 OLC sing 314 n n 
C3 H3A OLC sing 315 n n 
C2 H2 OLC sing 316 n n 
C2 H2A OLC sing 317 n n 
C21 H21 OLC sing 318 n n 
C21 H21A OLC sing 319 n n 
C22 H22 OLC sing 320 n n 
O25 HO25 OLC sing 321 n n 
O23 HO23 OLC sing 322 n n 
#
_atom_sites.entry_id                     5A8E 
_atom_sites.fract_transf_matrix[1][1]    0.018861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016187 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 401 NA NA . 
C 2 NA A 1 402 402 NA NA . 
D 3 XTK A 1 501 501 XTK XTK . 
E 4 MHA A 1 801 801 MHA MHA . 
F 5 OLC A 1 2001 2001 OLC OLC . 
G 5 OLC A 1 2002 2002 OLC OLC . 
H 5 OLC A 1 2003 2003 OLC OLC . 
I 5 OLC A 1 2004 2004 OLC OLC . 
J 5 OLC A 1 2005 2005 OLC OLC . 
K 6 HOH A 1 3001 3001 HOH HOH . 
K 6 HOH A 2 3002 3002 HOH HOH . 
K 6 HOH A 3 3003 3003 HOH HOH . 
K 6 HOH A 4 3004 3004 HOH HOH . 
K 6 HOH A 5 3005 3005 HOH HOH . 
K 6 HOH A 6 3006 3006 HOH HOH . 
K 6 HOH A 7 3007 3007 HOH HOH . 
K 6 HOH A 8 3008 3008 HOH HOH . 
K 6 HOH A 9 3009 3009 HOH HOH . 
K 6 HOH A 10 3010 3010 HOH HOH . 
K 6 HOH A 11 3011 3011 HOH HOH . 
K 6 HOH A 12 3012 3012 HOH HOH . 
K 6 HOH A 13 3013 3013 HOH HOH . 
K 6 HOH A 14 3014 3014 HOH HOH . 
K 6 HOH A 15 3015 3015 HOH HOH . 
K 6 HOH A 16 3016 3016 HOH HOH . 
K 6 HOH A 17 3017 3017 HOH HOH . 
K 6 HOH A 18 3018 3018 HOH HOH . 
K 6 HOH A 19 3019 3019 HOH HOH . 
K 6 HOH A 20 3020 3020 HOH HOH . 
K 6 HOH A 21 3021 3021 HOH HOH . 
K 6 HOH A 22 3022 3022 HOH HOH . 
K 6 HOH A 23 3023 3023 HOH HOH . 
K 6 HOH A 24 3024 3024 HOH HOH . 
K 6 HOH A 25 3025 3025 HOH HOH . 
K 6 HOH A 26 3026 3026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . F 5 43.534 89.951 16.078 1 69.01 ? C18 OLC 2001 A 1 
HETATM 2 C C10 OLC . . . F 5 36.416 85.017 15.409 1 56.63 ? C10 OLC 2001 A 1 
HETATM 3 C C9 OLC . . . F 5 35.197 84.091 15.365 1 54.26 ? C9 OLC 2001 A 1 
HETATM 4 C C17 OLC . . . F 5 42.763 88.75 16.618 1 69.09 ? C17 OLC 2001 A 1 
HETATM 5 C C11 OLC . . . F 5 36.641 85.435 16.85 1 60.02 ? C11 OLC 2001 A 1 
HETATM 6 C C8 OLC . . . F 5 35.081 83.286 14.074 1 50.38 ? C8 OLC 2001 A 1 
HETATM 7 C C16 OLC . . . F 5 41.344 89.133 17.045 1 69.43 ? C16 OLC 2001 A 1 
HETATM 8 C C12 OLC . . . F 5 37.289 86.542 17.222 1 64.1 ? C12 OLC 2001 A 1 
HETATM 9 C C7 OLC . . . F 5 34.613 81.854 14.334 1 47.97 ? C7 OLC 2001 A 1 
HETATM 10 C C15 OLC . . . F 5 40.317 88.149 16.49 1 69.83 ? C15 OLC 2001 A 1 
HETATM 11 C C13 OLC . . . F 5 37.887 87.522 16.234 1 66.53 ? C13 OLC 2001 A 1 
HETATM 12 C C6 OLC . . . F 5 33.76 81.323 13.192 1 45.99 ? C6 OLC 2001 A 1 
HETATM 13 C C14 OLC . . . F 5 38.882 88.465 16.921 1 68.15 ? C14 OLC 2001 A 1 
HETATM 14 C C5 OLC . . . F 5 33.178 79.955 13.521 1 43.95 ? C5 OLC 2001 A 1 
HETATM 15 C C4 OLC . . . F 5 32.113 79.56 12.503 1 44.01 ? C4 OLC 2001 A 1 
HETATM 16 C C3 OLC . . . F 5 30.748 80.145 12.804 1 43.21 ? C3 OLC 2001 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#