data_5A8E
#
_model_server_result.job_id            3u-muH06uqaXICYIAIqgFw 
_model_server_result.datetime_utc      '2024-11-22 10:28:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5a8e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5A8E 
#
_exptl.entry_id    5A8E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.383 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(2S)-3-(tert-butylamino)-2-hydroxypropoxy]-7-methyl-1H-indole-2-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5A8E 
_cell.length_a            53.019 
_cell.length_b            61.777 
_cell.length_c            95.561 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5A8E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc1 A OD1 ASP 57 A ASP 87 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc2 A OG SER 98 A SER 128 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 A O CYS 162 A CYS 192 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc4 A O ASP 165 A ASP 195 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 A O CYS 168 A CYS 198 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 B NA NA . A NA 401 1_555 K O HOH . A HOH 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc7 B NA NA . A NA 401 1_555 K O HOH . A HOH 3014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 B NA NA . A NA 401 1_555 K O HOH . A HOH 3015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc9 C NA NA . A NA 402 1_555 K O HOH . A HOH 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc10 C NA NA . A NA 402 1_555 K O HOH . A HOH 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc11 C NA NA . A NA 402 1_555 K O HOH . A HOH 3022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'C17 H23 N3 O2' 
_chem_comp.formula_weight    301.383 
_chem_comp.id                XTK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(2S)-3-(tert-butylamino)-2-hydroxypropoxy]-7-methyl-1H-indole-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C16 XTK trip 462 n n 
C16 C1 XTK sing 463 n n 
C1 N1 XTK sing 464 n y 
C1 C2 XTK doub 465 n y 
N1 C8 XTK sing 466 n y 
C8 C7 XTK sing 467 n y 
C8 C3 XTK doub 468 n y 
C7 C6 XTK doub 469 n y 
C7 C17 XTK sing 470 n n 
C6 C5 XTK sing 471 n y 
C5 C4 XTK doub 472 n y 
C2 C3 XTK sing 473 n y 
C3 C4 XTK sing 474 n y 
C4 O1 XTK sing 475 n n 
O1 C9 XTK sing 476 n n 
C9 C10 XTK sing 477 n n 
C10 O2 XTK sing 478 n n 
C10 C11 XTK sing 479 n n 
C11 N2 XTK sing 480 n n 
N2 C12 XTK sing 481 n n 
C12 C15 XTK sing 482 n n 
C12 C14 XTK sing 483 n n 
C12 C13 XTK sing 484 n n 
N1 H1 XTK sing 485 n n 
C2 H2 XTK sing 486 n n 
C6 H6 XTK sing 487 n n 
C17 H171 XTK sing 488 n n 
C17 H172 XTK sing 489 n n 
C17 H173 XTK sing 490 n n 
C5 H5 XTK sing 491 n n 
C9 H91C XTK sing 492 n n 
C9 H92C XTK sing 493 n n 
C10 H10 XTK sing 494 n n 
O2 HA XTK sing 495 n n 
C11 H111 XTK sing 496 n n 
C11 H112 XTK sing 497 n n 
N2 HB XTK sing 498 n n 
C15 H151 XTK sing 499 n n 
C15 H152 XTK sing 500 n n 
C15 H153 XTK sing 501 n n 
C14 H141 XTK sing 502 n n 
C14 H142 XTK sing 503 n n 
C14 H143 XTK sing 504 n n 
C13 H131 XTK sing 505 n n 
C13 H132 XTK sing 506 n n 
C13 H133 XTK sing 507 n n 
#
_atom_sites.entry_id                     5A8E 
_atom_sites.fract_transf_matrix[1][1]    0.018861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016187 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 401 NA NA . 
C 2 NA A 1 402 402 NA NA . 
D 3 XTK A 1 501 501 XTK XTK . 
E 4 MHA A 1 801 801 MHA MHA . 
F 5 OLC A 1 2001 2001 OLC OLC . 
G 5 OLC A 1 2002 2002 OLC OLC . 
H 5 OLC A 1 2003 2003 OLC OLC . 
I 5 OLC A 1 2004 2004 OLC OLC . 
J 5 OLC A 1 2005 2005 OLC OLC . 
K 6 HOH A 1 3001 3001 HOH HOH . 
K 6 HOH A 2 3002 3002 HOH HOH . 
K 6 HOH A 3 3003 3003 HOH HOH . 
K 6 HOH A 4 3004 3004 HOH HOH . 
K 6 HOH A 5 3005 3005 HOH HOH . 
K 6 HOH A 6 3006 3006 HOH HOH . 
K 6 HOH A 7 3007 3007 HOH HOH . 
K 6 HOH A 8 3008 3008 HOH HOH . 
K 6 HOH A 9 3009 3009 HOH HOH . 
K 6 HOH A 10 3010 3010 HOH HOH . 
K 6 HOH A 11 3011 3011 HOH HOH . 
K 6 HOH A 12 3012 3012 HOH HOH . 
K 6 HOH A 13 3013 3013 HOH HOH . 
K 6 HOH A 14 3014 3014 HOH HOH . 
K 6 HOH A 15 3015 3015 HOH HOH . 
K 6 HOH A 16 3016 3016 HOH HOH . 
K 6 HOH A 17 3017 3017 HOH HOH . 
K 6 HOH A 18 3018 3018 HOH HOH . 
K 6 HOH A 19 3019 3019 HOH HOH . 
K 6 HOH A 20 3020 3020 HOH HOH . 
K 6 HOH A 21 3021 3021 HOH HOH . 
K 6 HOH A 22 3022 3022 HOH HOH . 
K 6 HOH A 23 3023 3023 HOH HOH . 
K 6 HOH A 24 3024 3024 HOH HOH . 
K 6 HOH A 25 3025 3025 HOH HOH . 
K 6 HOH A 26 3026 3026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 XTK . . . D 3 25.211 52.119 9.997 1 18.68 ? N3 XTK 501 A 1 
HETATM 2 C C16 XTK . . . D 3 24.893 53.12 10.505 1 18.53 ? C16 XTK 501 A 1 
HETATM 3 C C1 XTK . . . D 3 24.536 54.295 11.033 1 18.29 ? C1 XTK 501 A 1 
HETATM 4 N N1 XTK . . . D 3 23.902 55.253 10.328 1 18.4 ? N1 XTK 501 A 1 
HETATM 5 C C8 XTK . . . D 3 23.669 56.297 11.158 1 18.31 ? C8 XTK 501 A 1 
HETATM 6 C C7 XTK . . . D 3 23.026 57.624 11.006 1 18.47 ? C7 XTK 501 A 1 
HETATM 7 C C6 XTK . . . D 3 22.933 58.488 12.091 1 18.45 ? C6 XTK 501 A 1 
HETATM 8 C C5 XTK . . . D 3 23.429 58.144 13.349 1 18.4 ? C5 XTK 501 A 1 
HETATM 9 C C2 XTK . . . D 3 24.752 54.611 12.363 1 18.44 ? C2 XTK 501 A 1 
HETATM 10 C C3 XTK . . . D 3 24.197 55.921 12.485 1 18.32 ? C3 XTK 501 A 1 
HETATM 11 C C4 XTK . . . D 3 24.05 56.906 13.594 1 18.23 ? C4 XTK 501 A 1 
HETATM 12 O O1 XTK . . . D 3 24.545 56.565 14.825 1 18.11 ? O1 XTK 501 A 1 
HETATM 13 C C9 XTK . . . D 3 24.206 57.254 16.029 1 18.09 ? C9 XTK 501 A 1 
HETATM 14 C C10 XTK . . . D 3 24.384 56.34 17.224 1 18.29 ? C10 XTK 501 A 1 
HETATM 15 O O2 XTK . . . D 3 24.023 57.083 18.391 1 17.53 ? O2 XTK 501 A 1 
HETATM 16 C C11 XTK . . . D 3 23.523 55.088 17.041 1 18.51 ? C11 XTK 501 A 1 
HETATM 17 N N2 XTK . . . D 3 23.428 54.333 18.275 1 18.81 ? N2 XTK 501 A 1 
HETATM 18 C C12 XTK . . . D 3 22.972 52.948 18.314 1 19.05 ? C12 XTK 501 A 1 
HETATM 19 C C15 XTK . . . D 3 24.067 52.063 17.704 1 19.15 ? C15 XTK 501 A 1 
HETATM 20 C C14 XTK . . . D 3 22.683 52.556 19.766 1 19.14 ? C14 XTK 501 A 1 
HETATM 21 C C13 XTK . . . D 3 21.663 52.839 17.533 1 19.48 ? C13 XTK 501 A 1 
HETATM 22 C C17 XTK . . . D 3 22.474 58.006 9.67 1 18.94 ? C17 XTK 501 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#