data_5A8Z # _model_server_result.job_id 7muO_Vv9BB3BMjKBH2E2jg _model_server_result.datetime_utc '2025-02-18 16:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 5A8Z # _exptl.entry_id 5A8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.379 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(4R)-7-methyl-2,5-bis(oxidanylidene)-1-[3-(trifluoromethyl)phenyl]-3,4,6,8-tetrahydropyrimido[4,5-d]pyridazin-4-yl]benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5A8Z _cell.length_a 73.119 _cell.length_b 73.119 _cell.length_c 70.162 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 401 NAG 2 n B FUC 2 B 2 FUC A 402 FUC 2 n C NAG 1 C 1 NAG A 411 NAG 2 n C FUC 2 C 2 FUC A 412 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 179 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 158 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 169 A CYS 191 1_555 A SG CYS 194 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 A ND2 ASN 95 A ASN 109 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 144 A ASN 159 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C21 H16 F3 N5 O2' _chem_comp.formula_weight 427.379 _chem_comp.id IUL _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(4R)-7-methyl-2,5-bis(oxidanylidene)-1-[3-(trifluoromethyl)phenyl]-3,4,6,8-tetrahydropyrimido[4,5-d]pyridazin-4-yl]benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IUL doub 196 n y C1 C6 IUL sing 197 n y C2 C3 IUL sing 198 n y C3 C4 IUL doub 199 n y C3 C7 IUL sing 200 n n C4 C5 IUL sing 201 n y C5 C6 IUL doub 202 n y C6 C22 IUL sing 203 n n C7 N10 IUL sing 204 n n C7 C25 IUL sing 205 n n N8 C9 IUL sing 206 n n N8 C11 IUL sing 207 n n N8 C24 IUL sing 208 n n C9 N10 IUL sing 209 n n C9 O21 IUL doub 210 n n C11 C12 IUL doub 211 n y C11 C16 IUL sing 212 n y C12 C13 IUL sing 213 n y C13 C14 IUL doub 214 n y C14 C15 IUL sing 215 n y C15 C16 IUL doub 216 n y C15 C17 IUL sing 217 n n C17 F18 IUL sing 218 n n C17 F19 IUL sing 219 n n C17 F20 IUL sing 220 n n C22 N23 IUL trip 221 n n C24 C25 IUL doub 222 n n C24 C29 IUL sing 223 n n C25 C26 IUL sing 224 n n C26 N27 IUL sing 225 n n C26 O30 IUL doub 226 n n N27 N28 IUL sing 227 n n N28 C29 IUL sing 228 n n N28 C31 IUL sing 229 n n C1 H1 IUL sing 230 n n C2 H2 IUL sing 231 n n C4 H4 IUL sing 232 n n C5 H5 IUL sing 233 n n C7 H7 IUL sing 234 n n N10 HN10 IUL sing 235 n n C12 H12 IUL sing 236 n n C13 H13 IUL sing 237 n n C14 H14 IUL sing 238 n n C16 H16 IUL sing 239 n n N27 HN27 IUL sing 240 n n C29 H29 IUL sing 241 n n C29 H29A IUL sing 242 n n C31 H31 IUL sing 243 n n C31 H31A IUL sing 244 n n C31 H31B IUL sing 245 n n # _atom_sites.entry_id 5A8Z _atom_sites.fract_transf_matrix[1][1] 0.013676 _atom_sites.fract_transf_matrix[1][2] 0.007896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 403 403 NAG NAG . E 4 IUL A 1 1001 1001 IUL IUL . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IUL . . . E 4 28.072 -23.909 8.309 1 23.51 ? C1 IUL 1001 A 1 HETATM 2 C C2 IUL . . . E 4 28.708 -23.109 7.356 1 21.28 ? C2 IUL 1001 A 1 HETATM 3 C C3 IUL . . . E 4 28.289 -23.138 6.025 1 20.72 ? C3 IUL 1001 A 1 HETATM 4 C C4 IUL . . . E 4 27.233 -23.97 5.637 1 20.55 ? C4 IUL 1001 A 1 HETATM 5 C C5 IUL . . . E 4 26.599 -24.767 6.556 1 19.89 ? C5 IUL 1001 A 1 HETATM 6 C C6 IUL . . . E 4 27.005 -24.739 7.899 1 20.62 ? C6 IUL 1001 A 1 HETATM 7 C C7 IUL . . . E 4 29.008 -22.314 4.97 1 20.54 ? C7 IUL 1001 A 1 HETATM 8 N N8 IUL . . . E 4 28.209 -22.957 2.338 1 16.85 ? N8 IUL 1001 A 1 HETATM 9 C C9 IUL . . . E 4 29.202 -23.646 2.934 1 17.27 ? C9 IUL 1001 A 1 HETATM 10 N N10 IUL . . . E 4 29.695 -23.341 4.147 1 18.12 ? N10 IUL 1001 A 1 HETATM 11 C C11 IUL . . . E 4 27.719 -23.448 1.086 1 16.81 ? C11 IUL 1001 A 1 HETATM 12 C C12 IUL . . . E 4 28.283 -23.186 -0.157 1 16.05 ? C12 IUL 1001 A 1 HETATM 13 C C13 IUL . . . E 4 27.724 -23.708 -1.313 1 14.75 ? C13 IUL 1001 A 1 HETATM 14 C C14 IUL . . . E 4 26.595 -24.519 -1.252 1 14.77 ? C14 IUL 1001 A 1 HETATM 15 C C15 IUL . . . E 4 26.005 -24.803 -0.023 1 14.98 ? C15 IUL 1001 A 1 HETATM 16 C C16 IUL . . . E 4 26.563 -24.267 1.131 1 15.14 ? C16 IUL 1001 A 1 HETATM 17 C C17 IUL . . . E 4 24.804 -25.718 0.028 1 14.73 ? C17 IUL 1001 A 1 HETATM 18 F F18 IUL . . . E 4 23.947 -25.541 -1.047 1 12.24 ? F18 IUL 1001 A 1 HETATM 19 F F19 IUL . . . E 4 25.247 -27.046 0.041 1 18.66 ? F19 IUL 1001 A 1 HETATM 20 F F20 IUL . . . E 4 24.063 -25.558 1.171 1 14.03 ? F20 IUL 1001 A 1 HETATM 21 O O21 IUL . . . E 4 29.68 -24.589 2.35 1 18.12 ? O21 IUL 1001 A 1 HETATM 22 C C22 IUL . . . E 4 26.332 -25.59 8.825 1 19.85 ? C22 IUL 1001 A 1 HETATM 23 N N23 IUL . . . E 4 25.78 -26.324 9.487 1 19.3 ? N23 IUL 1001 A 1 HETATM 24 C C24 IUL . . . E 4 27.692 -21.818 2.94 1 19.42 ? C24 IUL 1001 A 1 HETATM 25 C C25 IUL . . . E 4 28.052 -21.452 4.212 1 19.93 ? C25 IUL 1001 A 1 HETATM 26 C C26 IUL . . . E 4 27.55 -20.296 4.831 1 20.11 ? C26 IUL 1001 A 1 HETATM 27 N N27 IUL . . . E 4 26.774 -19.468 4.142 1 20.81 ? N27 IUL 1001 A 1 HETATM 28 N N28 IUL . . . E 4 26.548 -19.615 2.794 1 22.83 ? N28 IUL 1001 A 1 HETATM 29 C C29 IUL . . . E 4 26.725 -20.947 2.19 1 18.13 ? C29 IUL 1001 A 1 HETATM 30 O O30 IUL . . . E 4 27.817 -20.046 5.981 1 22.57 ? O30 IUL 1001 A 1 HETATM 31 C C31 IUL . . . E 4 27.406 -18.648 2.1 1 25.07 ? C31 IUL 1001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 810 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #