data_5A9K # _model_server_result.job_id Ph_4ncdwVvqj5HiusY8y2g _model_server_result.datetime_utc '2024-10-18 14:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5a9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1580}' # _entry.id 5A9K # _exptl.entry_id 5A9K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5A9K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 140 A SER 440 1_555 I MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A OD2 ASP 179 A ASP 479 1_555 I MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc3 G O2 PO4 . A PO4 1580 1_555 I MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 H O4 PO4 . A PO4 1581 1_555 I MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc5 B OG SER 140 B SER 440 1_555 L MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc6 B OD2 ASP 179 B ASP 479 1_555 L MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc7 J O2 PO4 . B PO4 1579 1_555 L MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc8 K O4 PO4 . B PO4 1580 1_555 L MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc9 C OG SER 140 C SER 440 1_555 O MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc10 C OD2 ASP 179 C ASP 479 1_555 O MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc11 M O2 PO4 . C PO4 1579 1_555 O MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc12 N O4 PO4 . C PO4 1580 1_555 O MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5A9K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 1580 1580 PO4 PO4 . H 2 PO4 A 1 1581 1581 PO4 PO4 . I 3 MG A 1 1582 1582 MG MG . J 2 PO4 B 1 1579 1579 PO4 PO4 . K 2 PO4 B 1 1580 1580 PO4 PO4 . L 3 MG B 1 1581 1581 MG MG . M 2 PO4 C 1 1579 1579 PO4 PO4 . N 2 PO4 C 1 1580 1580 PO4 PO4 . O 3 MG C 1 1581 1581 MG MG . P 2 PO4 D 1 1580 1580 PO4 PO4 . Q 2 PO4 E 1 1579 1579 PO4 PO4 . R 2 PO4 F 1 1580 1580 PO4 PO4 . S 4 HOH A 1 2001 2001 HOH HOH . S 4 HOH A 2 2002 2002 HOH HOH . S 4 HOH A 3 2003 2003 HOH HOH . T 4 HOH B 1 2001 2001 HOH HOH . T 4 HOH B 2 2002 2002 HOH HOH . T 4 HOH B 3 2003 2003 HOH HOH . U 4 HOH C 1 2001 2001 HOH HOH . U 4 HOH C 2 2002 2002 HOH HOH . U 4 HOH C 3 2003 2003 HOH HOH . V 4 HOH D 1 2001 2001 HOH HOH . V 4 HOH D 2 2002 2002 HOH HOH . V 4 HOH D 3 2003 2003 HOH HOH . V 4 HOH D 4 2004 2004 HOH HOH . W 4 HOH E 1 2001 2001 HOH HOH . W 4 HOH E 2 2002 2002 HOH HOH . X 4 HOH F 1 2001 2001 HOH HOH . X 4 HOH F 2 2002 2002 HOH HOH . X 4 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . P 2 -9.144 -32.985 -42.171 1 87.94 ? P PO4 1580 D 1 HETATM 2 O O1 PO4 . . . P 2 -8.509 -31.637 -41.956 1 88.46 ? O1 PO4 1580 D 1 HETATM 3 O O2 PO4 . . . P 2 -10.555 -32.74 -42.636 1 88.96 ? O2 PO4 1580 D 1 HETATM 4 O O3 PO4 . . . P 2 -9.132 -33.78 -40.879 1 87.87 ? O3 PO4 1580 D 1 HETATM 5 O O4 PO4 . . . P 2 -8.405 -33.746 -43.247 1 86.96 ? O4 PO4 1580 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #