data_5AA5
#
_model_server_result.job_id            0fMoB5hgZeTgRQDYSSRj6g 
_model_server_result.datetime_utc      '2025-04-23 10:26:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5aa5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":504}' 
#
_entry.id    5AA5 
#
_exptl.entry_id    5AA5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.58 
_cell.angle_gamma         90 
_cell.entry_id            5AA5 
_cell.length_a            81.78 
_cell.length_b            267.971 
_cell.length_c            144.686 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 Q N N 
? 4 R N N 
? 4 W N N 
? 4 BA N N 
? 4 PA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 84 C CYS 84 1_555 C SG CYS 576 C CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
disulf ? disulf2 E SG CYS 84 E CYS 84 1_555 E SG CYS 576 E CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
disulf ? disulf3 G SG CYS 84 G CYS 84 1_555 G SG CYS 576 G CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
disulf ? disulf4 I SG CYS 84 I CYS 84 1_555 I SG CYS 576 I CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
disulf ? disulf5 J SG CYS 84 K CYS 84 1_555 J SG CYS 576 K CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
disulf ? disulf6 K SG CYS 84 L CYS 84 1_555 K SG CYS 576 L CYS 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 235 n n 
C1 O1B MLA doub 236 n n 
C1 C2 MLA sing 237 n n 
O1A H1A MLA sing 238 n n 
C2 C3 MLA sing 239 n n 
C2 HC21 MLA sing 240 n n 
C2 HC22 MLA sing 241 n n 
C3 O3A MLA doub 242 n n 
C3 O3B MLA sing 243 n n 
O3B H3B MLA sing 244 n n 
#
_atom_sites.entry_id                     5AA5 
_atom_sites.fract_transf_matrix[1][1]    0.012228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003641 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003732 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 SF4 A 1 501 501 SF4 SF4 . 
N 4 MLA A 1 701 701 MLA MLA . 
O 3 SF4 A 1 502 502 SF4 SF4 . 
P 3 SF4 A 1 503 503 SF4 SF4 . 
Q 4 MLA A 1 504 504 MLA MLA . 
R 4 MLA A 1 505 505 MLA MLA . 
S 3 SF4 B 1 501 501 SF4 SF4 . 
T 3 SF4 B 1 502 502 SF4 SF4 . 
U 3 SF4 B 1 503 503 SF4 SF4 . 
V 5 NFU C 1 701 701 NFU NFU . 
W 4 MLA D 1 701 701 MLA MLA . 
X 3 SF4 D 1 702 702 SF4 SF4 . 
Y 3 SF4 D 1 703 703 SF4 SF4 . 
Z 3 SF4 D 1 704 704 SF4 SF4 . 
AA 5 NFU E 1 701 701 NFU NFU . 
BA 4 MLA F 1 701 701 MLA MLA . 
CA 3 SF4 F 1 702 702 SF4 SF4 . 
DA 3 SF4 F 1 703 703 SF4 SF4 . 
EA 3 SF4 F 1 704 704 SF4 SF4 . 
FA 5 NFU G 1 701 701 NFU NFU . 
GA 3 SF4 H 1 501 501 SF4 SF4 . 
HA 3 SF4 H 1 502 502 SF4 SF4 . 
IA 3 SF4 H 1 503 503 SF4 SF4 . 
JA 5 NFU I 1 701 701 NFU NFU . 
KA 5 NFU K 1 701 701 NFU NFU . 
LA 5 NFU L 1 701 701 NFU NFU . 
MA 3 SF4 M 1 702 702 SF4 SF4 . 
NA 3 SF4 M 1 703 703 SF4 SF4 . 
OA 3 SF4 M 1 704 704 SF4 SF4 . 
PA 4 MLA M 1 705 705 MLA MLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . Q 4 26.379 120.533 11.36 1 49.81 ? C1 MLA 504 A 1 
HETATM 2 O O1A MLA . . . Q 4 25.437 121.158 11.894 1 50.01 ? O1A MLA 504 A 1 
HETATM 3 O O1B MLA . . . Q 4 27.555 120.628 11.775 1 47.08 ? O1B MLA 504 A 1 
HETATM 4 C C2 MLA . . . Q 4 26.062 119.641 10.174 1 47.31 ? C2 MLA 504 A 1 
HETATM 5 C C3 MLA . . . Q 4 27.214 118.723 9.816 1 48.46 ? C3 MLA 504 A 1 
HETATM 6 O O3A MLA . . . Q 4 27.861 118.157 10.725 1 45.6 ? O3A MLA 504 A 1 
HETATM 7 O O3B MLA . . . Q 4 27.475 118.543 8.607 1 49.16 ? O3B MLA 504 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    378 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#