data_5ACB
#
_model_server_result.job_id            WlfuvKX98DaJttsfFktf3w 
_model_server_result.datetime_utc      '2024-11-04 20:26:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5acb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2000}' 
#
_entry.id    5ACB 
#
_exptl.entry_id    5ACB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              560.09 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.81 
_cell.angle_gamma         90 
_cell.entry_id            5ACB 
_cell.length_a            49.78 
_cell.length_b            148.69 
_cell.length_c            91.58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ACB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,C,E 1 1 
A,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C TYR 180 C TYR 892 1_555 C N TPO 181 C TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 C C TPO 181 C TPO 893 1_555 C N ASN 182 C ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 C SG CYS 327 C CYS 1039 1_555 E CBL 5I1 . C 5I1 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.637 ? 
covale ? covale4 D C TYR 180 D TYR 892 1_555 D N TPO 181 D TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 D C TPO 181 D TPO 893 1_555 D N ASN 182 D ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale6 D SG CYS 327 D CYS 1039 1_555 F CBL 5I1 . D 5I1 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
#
_chem_comp.formula           'C30 H34 Cl N7 O2' 
_chem_comp.formula_weight    560.09 
_chem_comp.id                5I1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5ACB 
_atom_sites.fract_transf_matrix[1][1]    0.020088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001338 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010944 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5I1 C 1 2000 2000 5I1 5I1 . 
F 3 5I1 D 1 2000 2000 5I1 5I1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 5I1 . . . E 3 -1.514 -13.998 41.142 1 68.27 ? N1 5I1 2000 C 1 
HETATM 2 C C2 5I1 . . . E 3 -0.989 -14.703 40.136 1 68.97 ? C2 5I1 2000 C 1 
HETATM 3 N N3 5I1 . . . E 3 -0.326 -14.071 39.139 1 69.82 ? N3 5I1 2000 C 1 
HETATM 4 C C4 5I1 . . . E 3 -0.133 -12.736 39.071 1 72.02 ? C4 5I1 2000 C 1 
HETATM 5 C C5 5I1 . . . E 3 -0.681 -11.972 40.121 1 72.7 ? C5 5I1 2000 C 1 
HETATM 6 CL CL5 5I1 . . . E 3 -0.583 -10.257 40.266 1 87.48 ? CL5 5I1 2000 C 1 
HETATM 7 C C6 5I1 . . . E 3 -1.365 -12.614 41.145 1 71.02 ? C6 5I1 2000 C 1 
HETATM 8 C CAB 5I1 . . . E 3 -0.779 -18.375 39.321 1 74.54 ? CAB 5I1 2000 C 1 
HETATM 9 N NAD 5I1 . . . E 3 -0.764 -19.172 38.053 1 78.48 ? NAD 5I1 2000 C 1 
HETATM 10 O OAE 5I1 . . . E 3 -0.029 -20.765 36.645 1 86.81 ? OAE 5I1 2000 C 1 
HETATM 11 C CAG 5I1 . . . E 3 5.398 -28.048 44.558 1 119.56 ? CAG 5I1 2000 C 1 
HETATM 12 C CAH 5I1 . . . E 3 0.066 -20.196 37.732 1 85.24 ? CAH 5I1 2000 C 1 
HETATM 13 C CAI 5I1 . . . E 3 0.54 -12.214 38.013 1 72.59 ? CAI 5I1 2000 C 1 
HETATM 14 C CAJ 5I1 . . . E 3 2.913 -22.061 40.167 1 104.1 ? CAJ 5I1 2000 C 1 
HETATM 15 C CAK 5I1 . . . E 3 1.563 -22.013 40.567 1 101.02 ? CAK 5I1 2000 C 1 
HETATM 16 C CAL 5I1 . . . E 3 0.611 -21.373 39.773 1 94.9 ? CAL 5I1 2000 C 1 
HETATM 17 C CAM 5I1 . . . E 3 0.998 -20.782 38.574 1 90.63 ? CAM 5I1 2000 C 1 
HETATM 18 C CAN 5I1 . . . E 3 2.321 -20.886 38.139 1 93.93 ? CAN 5I1 2000 C 1 
HETATM 19 C CAO 5I1 . . . E 3 3.273 -21.52 38.931 1 99.28 ? CAO 5I1 2000 C 1 
HETATM 20 C CAP 5I1 . . . E 3 3.946 -22.821 42.191 1 114.86 ? CAP 5I1 2000 C 1 
HETATM 21 N NAR 5I1 . . . E 3 5.576 -26.672 44.047 1 120.52 ? NAR 5I1 2000 C 1 
HETATM 22 C CAT 5I1 . . . E 3 -1.871 -16.568 37.913 1 75.02 ? CAT 5I1 2000 C 1 
HETATM 23 O OAU 5I1 . . . E 3 3.29 -22.171 43.011 1 110.81 ? OAU 5I1 2000 C 1 
HETATM 24 C CAV 5I1 . . . E 3 1.546 -12.781 37.316 1 72.66 ? CAV 5I1 2000 C 1 
HETATM 25 C CAW 5I1 . . . E 3 1.889 -11.908 36.344 1 73.58 ? CAW 5I1 2000 C 1 
HETATM 26 C CAX 5I1 . . . E 3 2.872 -12.154 35.466 1 73.36 ? CAX 5I1 2000 C 1 
HETATM 27 C CAY 5I1 . . . E 3 3.584 -13.347 35.529 1 71.88 ? CAY 5I1 2000 C 1 
HETATM 28 C CAZ 5I1 . . . E 3 3.242 -14.258 36.522 1 72.95 ? CAZ 5I1 2000 C 1 
HETATM 29 C CBA 5I1 . . . E 3 -1.526 -17.323 36.66 1 76.57 ? CBA 5I1 2000 C 1 
HETATM 30 N NBB 5I1 . . . E 3 -1.137 -16.033 40.145 1 71.07 ? NBB 5I1 2000 C 1 
HETATM 31 C CBD 5I1 . . . E 3 2.208 -13.95 37.414 1 72.31 ? CBD 5I1 2000 C 1 
HETATM 32 C CBE 5I1 . . . E 3 0.273 -11.031 37.449 1 73.45 ? CBE 5I1 2000 C 1 
HETATM 33 C CBG 5I1 . . . E 3 -1.733 -18.735 37.012 1 78.1 ? CBG 5I1 2000 C 1 
HETATM 34 C CBH 5I1 . . . E 3 -0.823 -16.86 38.975 1 72.65 ? CBH 5I1 2000 C 1 
HETATM 35 N NBI 5I1 . . . E 3 3.857 -22.727 40.843 1 110.63 ? NBI 5I1 2000 C 1 
HETATM 36 C CBJ 5I1 . . . E 3 5.017 -23.848 42.651 1 118.14 ? CBJ 5I1 2000 C 1 
HETATM 37 N NBK 5I1 . . . E 3 1.105 -10.846 36.439 1 73.93 ? NBK 5I1 2000 C 1 
HETATM 38 C CBL 5I1 . . . E 3 4.473 -25.234 42.184 1 121.57 ? CBL 5I1 2000 C 1 
HETATM 39 C CBM 5I1 . . . E 3 4.331 -26.267 43.334 1 119.77 ? CBM 5I1 2000 C 1 
HETATM 40 C CBN 5I1 . . . E 3 5.932 -25.762 45.165 1 120.19 ? CBN 5I1 2000 C 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#