data_5ACB
#
_model_server_result.job_id            Y3zDYDMQY71w0YICpEsiPA 
_model_server_result.datetime_utc      '2025-01-09 23:55:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5acb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2000}' 
#
_entry.id    5ACB 
#
_exptl.entry_id    5ACB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              560.09 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.81 
_cell.angle_gamma         90 
_cell.entry_id            5ACB 
_cell.length_a            49.78 
_cell.length_b            148.69 
_cell.length_c            91.58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ACB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,C,E 1 1 
A,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C TYR 180 C TYR 892 1_555 C N TPO 181 C TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 C C TPO 181 C TPO 893 1_555 C N ASN 182 C ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 C SG CYS 327 C CYS 1039 1_555 E CBL 5I1 . C 5I1 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.637 ? 
covale ? covale4 D C TYR 180 D TYR 892 1_555 D N TPO 181 D TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 D C TPO 181 D TPO 893 1_555 D N ASN 182 D ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale6 D SG CYS 327 D CYS 1039 1_555 F CBL 5I1 . D 5I1 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
#
_chem_comp.formula           'C30 H34 Cl N7 O2' 
_chem_comp.formula_weight    560.09 
_chem_comp.id                5I1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 5I1 doub 1 n y 
N1 C6 5I1 sing 2 n y 
C2 N3 5I1 sing 3 n y 
C2 NBB 5I1 sing 4 n n 
N3 C4 5I1 doub 5 n y 
C4 C5 5I1 sing 6 n y 
C4 CAI 5I1 sing 7 n n 
C5 CL5 5I1 sing 8 n n 
C5 C6 5I1 doub 9 n y 
CAB NAD 5I1 sing 10 n n 
CAB CBH 5I1 sing 11 n n 
NAD CAH 5I1 sing 12 n n 
NAD CBG 5I1 sing 13 n n 
OAE CAH 5I1 doub 14 n n 
CAG NAR 5I1 sing 15 n n 
CAH CAM 5I1 sing 16 n n 
CAI CAV 5I1 sing 17 n y 
CAI CBE 5I1 doub 18 n y 
CAJ CAK 5I1 doub 19 n y 
CAJ CAO 5I1 sing 20 n y 
CAJ NBI 5I1 sing 21 n n 
CAK CAL 5I1 sing 22 n y 
CAL CAM 5I1 doub 23 n y 
CAM CAN 5I1 sing 24 n y 
CAN CAO 5I1 doub 25 n y 
CAP OAU 5I1 doub 26 n n 
CAP NBI 5I1 sing 27 n n 
CAP CBJ 5I1 sing 28 n n 
NAR CBM 5I1 sing 29 n n 
NAR CBN 5I1 sing 30 n n 
CAT CBA 5I1 sing 31 n n 
CAT CBH 5I1 sing 32 n n 
CAV CAW 5I1 doub 33 n y 
CAV CBD 5I1 sing 34 n y 
CAW CAX 5I1 sing 35 n y 
CAW NBK 5I1 sing 36 n y 
CAX CAY 5I1 doub 37 n y 
CAY CAZ 5I1 sing 38 n y 
CAZ CBD 5I1 doub 39 n y 
CBA CBG 5I1 sing 40 n n 
NBB CBH 5I1 sing 41 n n 
CBE NBK 5I1 sing 42 n y 
CBJ CBL 5I1 sing 43 n n 
CBL CBM 5I1 sing 44 n n 
C6 H6 5I1 sing 45 n n 
CAB HAB 5I1 sing 46 n n 
CAB HABA 5I1 sing 47 n n 
CAG HAG 5I1 sing 48 n n 
CAG HAGA 5I1 sing 49 n n 
CAG HAGB 5I1 sing 50 n n 
CAK HAK 5I1 sing 51 n n 
CAL HAL 5I1 sing 52 n n 
CAN HAN 5I1 sing 53 n n 
CAO HAO 5I1 sing 54 n n 
CAT HAT 5I1 sing 55 n n 
CAT HATA 5I1 sing 56 n n 
CAX HAX 5I1 sing 57 n n 
CAY HAY 5I1 sing 58 n n 
CAZ HAZ 5I1 sing 59 n n 
CBA HBA 5I1 sing 60 n n 
CBA HBAA 5I1 sing 61 n n 
NBB HNBB 5I1 sing 62 n n 
CBD HBD 5I1 sing 63 n n 
CBE HBE 5I1 sing 64 n n 
CBG HBG 5I1 sing 65 n n 
CBG HBGA 5I1 sing 66 n n 
CBH HBH 5I1 sing 67 n n 
NBI HNBI 5I1 sing 68 n n 
CBJ HBJ 5I1 sing 69 n n 
CBJ HBJA 5I1 sing 70 n n 
NBK HNBK 5I1 sing 71 n n 
CBL HBL 5I1 sing 72 n n 
CBL HBLA 5I1 sing 73 n n 
CBM HBM 5I1 sing 74 n n 
CBM HBMA 5I1 sing 75 n n 
CBN HBN 5I1 sing 76 n n 
CBN HBNA 5I1 sing 77 n n 
CBN HBNB 5I1 sing 78 n n 
#
_atom_sites.entry_id                     5ACB 
_atom_sites.fract_transf_matrix[1][1]    0.020088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001338 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010944 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5I1 C 1 2000 2000 5I1 5I1 . 
F 3 5I1 D 1 2000 2000 5I1 5I1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 5I1 . . . F 3 -13.154 41.623 79.053 1 71.81 ? N1 5I1 2000 D 1 
HETATM 2 C C2 5I1 . . . F 3 -11.811 41.582 79.077 1 74.77 ? C2 5I1 2000 D 1 
HETATM 3 N N3 5I1 . . . F 3 -11.159 40.435 79.403 1 74.76 ? N3 5I1 2000 D 1 
HETATM 4 C C4 5I1 . . . F 3 -11.786 39.266 79.708 1 75.96 ? C4 5I1 2000 D 1 
HETATM 5 C C5 5I1 . . . F 3 -13.203 39.296 79.694 1 75.98 ? C5 5I1 2000 D 1 
HETATM 6 CL CL5 5I1 . . . F 3 -14.236 37.974 80.047 1 89.09 ? CL5 5I1 2000 D 1 
HETATM 7 C C6 5I1 . . . F 3 -13.869 40.471 79.365 1 73.71 ? C6 5I1 2000 D 1 
HETATM 8 C CAB 5I1 . . . F 3 -9.162 44.059 78.352 1 77.04 ? CAB 5I1 2000 D 1 
HETATM 9 N NAD 5I1 . . . F 3 -7.759 44.217 78.817 1 77.16 ? NAD 5I1 2000 D 1 
HETATM 10 O OAE 5I1 . . . F 3 -6.932 44.35 76.688 1 76.52 ? OAE 5I1 2000 D 1 
HETATM 11 C CAG 5I1 . . . F 3 2.706 42.549 84.08 1 112.2 ? CAG 5I1 2000 D 1 
HETATM 12 C CAH 5I1 . . . F 3 -6.757 44.391 77.906 1 80.9 ? CAH 5I1 2000 D 1 
HETATM 13 C CAI 5I1 . . . F 3 -11.044 38.17 80.037 1 75.53 ? CAI 5I1 2000 D 1 
HETATM 14 C CAJ 5I1 . . . F 3 -2.832 44.511 79.427 1 97.53 ? CAJ 5I1 2000 D 1 
HETATM 15 C CAK 5I1 . . . F 3 -3.619 45.681 79.442 1 97.4 ? CAK 5I1 2000 D 1 
HETATM 16 C CAL 5I1 . . . F 3 -4.92 45.667 78.921 1 93.58 ? CAL 5I1 2000 D 1 
HETATM 17 C CAM 5I1 . . . F 3 -5.453 44.486 78.392 1 88.03 ? CAM 5I1 2000 D 1 
HETATM 18 C CAN 5I1 . . . F 3 -4.689 43.321 78.409 1 89.39 ? CAN 5I1 2000 D 1 
HETATM 19 C CAO 5I1 . . . F 3 -3.397 43.336 78.919 1 92.18 ? CAO 5I1 2000 D 1 
HETATM 20 C CAP 5I1 . . . F 3 -0.64 45.374 79.937 1 103.6 ? CAP 5I1 2000 D 1 
HETATM 21 N NAR 5I1 . . . F 3 2.259 43.879 83.673 1 112.6 ? NAR 5I1 2000 D 1 
HETATM 22 C CAT 5I1 . . . F 3 -9.806 43.488 80.586 1 76.63 ? CAT 5I1 2000 D 1 
HETATM 23 O OAU 5I1 . . . F 3 -0.76 46.515 79.482 1 103.7 ? OAU 5I1 2000 D 1 
HETATM 24 C CAV 5I1 . . . F 3 -9.8 37.854 79.614 1 76.37 ? CAV 5I1 2000 D 1 
HETATM 25 C CAW 5I1 . . . F 3 -9.46 36.695 80.218 1 77.15 ? CAW 5I1 2000 D 1 
HETATM 26 C CAX 5I1 . . . F 3 -8.283 36.091 80.01 1 77.21 ? CAX 5I1 2000 D 1 
HETATM 27 C CAY 5I1 . . . F 3 -7.348 36.649 79.146 1 77.9 ? CAY 5I1 2000 D 1 
HETATM 28 C CAZ 5I1 . . . F 3 -7.68 37.84 78.512 1 78.36 ? CAZ 5I1 2000 D 1 
HETATM 29 C CBA 5I1 . . . F 3 -8.407 43.498 81.137 1 75.87 ? CBA 5I1 2000 D 1 
HETATM 30 N NBB 5I1 . . . F 3 -11.16 42.706 78.765 1 76.23 ? NBB 5I1 2000 D 1 
HETATM 31 C CBD 5I1 . . . F 3 -8.925 38.427 78.766 1 76.91 ? CBD 5I1 2000 D 1 
HETATM 32 C CBE 5I1 . . . F 3 -11.427 37.22 80.899 1 76 ? CBE 5I1 2000 D 1 
HETATM 33 C CBG 5I1 . . . F 3 -7.434 44.306 80.305 1 76.76 ? CBG 5I1 2000 D 1 
HETATM 34 C CBH 5I1 . . . F 3 -9.784 42.978 79.189 1 76.55 ? CBH 5I1 2000 D 1 
HETATM 35 N NBI 5I1 . . . F 3 -1.579 44.389 79.92 1 100.61 ? NBI 5I1 2000 D 1 
HETATM 36 C CBJ 5I1 . . . F 3 0.694 44.938 80.598 1 107.19 ? CBJ 5I1 2000 D 1 
HETATM 37 N NBK 5I1 . . . F 3 -10.463 36.321 80.996 1 77.07 ? NBK 5I1 2000 D 1 
HETATM 38 C CBL 5I1 . . . F 3 0.431 44.813 82.113 1 108.39 ? CBL 5I1 2000 D 1 
HETATM 39 C CBM 5I1 . . . F 3 1.171 43.566 82.687 1 111.31 ? CBM 5I1 2000 D 1 
HETATM 40 C CBN 5I1 . . . F 3 3.234 44.675 82.907 1 113.3 ? CBN 5I1 2000 D 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           40 
#