data_5ADB # _model_server_result.job_id X8_EA1LH9tVpBqagD7nBvQ _model_server_result.datetime_utc '2024-11-27 19:22:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5adb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":760}' # _entry.id 5ADB # _exptl.entry_id 5ADB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ADB _cell.length_a 51.65 _cell.length_b 111.01 _cell.length_c 165.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ADB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 1717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 1717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 G ZN ZN . A ZN 1717 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 G ZN ZN . A ZN 1717 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 5ADB _atom_sites.fract_transf_matrix[1][1] 0.019361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B H4B . E 4 XEB A 1 800 800 XEB XEB . F 5 ACT A 1 860 860 ACT ACT . G 6 ZN A 1 1717 1717 ZN ZN . H 2 HEM B 1 750 750 HEM HEM . I 3 H4B B 1 760 760 H4B H4B . J 4 XEB B 1 800 800 XEB XEB . K 5 ACT B 1 860 860 ACT ACT . L 7 HOH A 1 2001 2001 HOH HOH . L 7 HOH A 2 2002 2002 HOH HOH . L 7 HOH A 3 2003 2003 HOH HOH . L 7 HOH A 4 2004 2004 HOH HOH . L 7 HOH A 5 2005 2005 HOH HOH . L 7 HOH A 6 2006 2006 HOH HOH . L 7 HOH A 7 2007 2007 HOH HOH . L 7 HOH A 8 2008 2008 HOH HOH . L 7 HOH A 9 2009 2009 HOH HOH . L 7 HOH A 10 2010 2010 HOH HOH . L 7 HOH A 11 2011 2011 HOH HOH . L 7 HOH A 12 2012 2012 HOH HOH . L 7 HOH A 13 2013 2013 HOH HOH . L 7 HOH A 14 2014 2014 HOH HOH . L 7 HOH A 15 2015 2015 HOH HOH . L 7 HOH A 16 2016 2016 HOH HOH . L 7 HOH A 17 2017 2017 HOH HOH . L 7 HOH A 18 2018 2018 HOH HOH . L 7 HOH A 19 2019 2019 HOH HOH . L 7 HOH A 20 2020 2020 HOH HOH . L 7 HOH A 21 2021 2021 HOH HOH . L 7 HOH A 22 2022 2022 HOH HOH . L 7 HOH A 23 2023 2023 HOH HOH . L 7 HOH A 24 2024 2024 HOH HOH . L 7 HOH A 25 2025 2025 HOH HOH . L 7 HOH A 26 2026 2026 HOH HOH . L 7 HOH A 27 2027 2027 HOH HOH . L 7 HOH A 28 2028 2028 HOH HOH . L 7 HOH A 29 2029 2029 HOH HOH . L 7 HOH A 30 2030 2030 HOH HOH . L 7 HOH A 31 2031 2031 HOH HOH . L 7 HOH A 32 2032 2032 HOH HOH . L 7 HOH A 33 2033 2033 HOH HOH . L 7 HOH A 34 2034 2034 HOH HOH . L 7 HOH A 35 2035 2035 HOH HOH . L 7 HOH A 36 2036 2036 HOH HOH . L 7 HOH A 37 2037 2037 HOH HOH . L 7 HOH A 38 2038 2038 HOH HOH . L 7 HOH A 39 2039 2039 HOH HOH . L 7 HOH A 40 2040 2040 HOH HOH . L 7 HOH A 41 2041 2041 HOH HOH . L 7 HOH A 42 2042 2042 HOH HOH . L 7 HOH A 43 2043 2043 HOH HOH . L 7 HOH A 44 2044 2044 HOH HOH . L 7 HOH A 45 2045 2045 HOH HOH . L 7 HOH A 46 2046 2046 HOH HOH . L 7 HOH A 47 2047 2047 HOH HOH . L 7 HOH A 48 2048 2048 HOH HOH . L 7 HOH A 49 2049 2049 HOH HOH . L 7 HOH A 50 2050 2050 HOH HOH . L 7 HOH A 51 2051 2051 HOH HOH . L 7 HOH A 52 2052 2052 HOH HOH . L 7 HOH A 53 2053 2053 HOH HOH . L 7 HOH A 54 2054 2054 HOH HOH . L 7 HOH A 55 2055 2055 HOH HOH . L 7 HOH A 56 2056 2056 HOH HOH . L 7 HOH A 57 2057 2057 HOH HOH . L 7 HOH A 58 2058 2058 HOH HOH . L 7 HOH A 59 2059 2059 HOH HOH . L 7 HOH A 60 2060 2060 HOH HOH . L 7 HOH A 61 2061 2061 HOH HOH . L 7 HOH A 62 2062 2062 HOH HOH . L 7 HOH A 63 2063 2063 HOH HOH . L 7 HOH A 64 2064 2064 HOH HOH . L 7 HOH A 65 2065 2065 HOH HOH . L 7 HOH A 66 2066 2066 HOH HOH . L 7 HOH A 67 2067 2067 HOH HOH . L 7 HOH A 68 2068 2068 HOH HOH . L 7 HOH A 69 2069 2069 HOH HOH . L 7 HOH A 70 2070 2070 HOH HOH . L 7 HOH A 71 2071 2071 HOH HOH . L 7 HOH A 72 2072 2072 HOH HOH . L 7 HOH A 73 2073 2073 HOH HOH . L 7 HOH A 74 2074 2074 HOH HOH . L 7 HOH A 75 2075 2075 HOH HOH . L 7 HOH A 76 2076 2076 HOH HOH . L 7 HOH A 77 2077 2077 HOH HOH . L 7 HOH A 78 2078 2078 HOH HOH . L 7 HOH A 79 2079 2079 HOH HOH . L 7 HOH A 80 2080 2080 HOH HOH . L 7 HOH A 81 2081 2081 HOH HOH . L 7 HOH A 82 2082 2082 HOH HOH . L 7 HOH A 83 2083 2083 HOH HOH . L 7 HOH A 84 2084 2084 HOH HOH . L 7 HOH A 85 2085 2085 HOH HOH . L 7 HOH A 86 2086 2086 HOH HOH . L 7 HOH A 87 2087 2087 HOH HOH . L 7 HOH A 88 2088 2088 HOH HOH . L 7 HOH A 89 2089 2089 HOH HOH . L 7 HOH A 90 2090 2090 HOH HOH . L 7 HOH A 91 2091 2091 HOH HOH . L 7 HOH A 92 2092 2092 HOH HOH . L 7 HOH A 93 2093 2093 HOH HOH . L 7 HOH A 94 2094 2094 HOH HOH . L 7 HOH A 95 2095 2095 HOH HOH . L 7 HOH A 96 2096 2096 HOH HOH . L 7 HOH A 97 2097 2097 HOH HOH . L 7 HOH A 98 2098 2098 HOH HOH . L 7 HOH A 99 2099 2099 HOH HOH . L 7 HOH A 100 2100 2100 HOH HOH . M 7 HOH B 1 2001 2001 HOH HOH . M 7 HOH B 2 2002 2002 HOH HOH . M 7 HOH B 3 2003 2003 HOH HOH . M 7 HOH B 4 2004 2004 HOH HOH . M 7 HOH B 5 2005 2005 HOH HOH . M 7 HOH B 6 2006 2006 HOH HOH . M 7 HOH B 7 2007 2007 HOH HOH . M 7 HOH B 8 2008 2008 HOH HOH . M 7 HOH B 9 2009 2009 HOH HOH . M 7 HOH B 10 2010 2010 HOH HOH . M 7 HOH B 11 2011 2011 HOH HOH . M 7 HOH B 12 2012 2012 HOH HOH . M 7 HOH B 13 2013 2013 HOH HOH . M 7 HOH B 14 2014 2014 HOH HOH . M 7 HOH B 15 2015 2015 HOH HOH . M 7 HOH B 16 2016 2016 HOH HOH . M 7 HOH B 17 2017 2017 HOH HOH . M 7 HOH B 18 2018 2018 HOH HOH . M 7 HOH B 19 2019 2019 HOH HOH . M 7 HOH B 20 2020 2020 HOH HOH . M 7 HOH B 21 2021 2021 HOH HOH . M 7 HOH B 22 2022 2022 HOH HOH . M 7 HOH B 23 2023 2023 HOH HOH . M 7 HOH B 24 2024 2024 HOH HOH . M 7 HOH B 25 2025 2025 HOH HOH . M 7 HOH B 26 2026 2026 HOH HOH . M 7 HOH B 27 2027 2027 HOH HOH . M 7 HOH B 28 2028 2028 HOH HOH . M 7 HOH B 29 2029 2029 HOH HOH . M 7 HOH B 30 2030 2030 HOH HOH . M 7 HOH B 31 2031 2031 HOH HOH . M 7 HOH B 32 2032 2032 HOH HOH . M 7 HOH B 33 2033 2033 HOH HOH . M 7 HOH B 34 2034 2034 HOH HOH . M 7 HOH B 35 2035 2035 HOH HOH . M 7 HOH B 36 2036 2036 HOH HOH . M 7 HOH B 37 2037 2037 HOH HOH . M 7 HOH B 38 2038 2038 HOH HOH . M 7 HOH B 39 2039 2039 HOH HOH . M 7 HOH B 40 2040 2040 HOH HOH . M 7 HOH B 41 2041 2041 HOH HOH . M 7 HOH B 42 2042 2042 HOH HOH . M 7 HOH B 43 2043 2043 HOH HOH . M 7 HOH B 44 2044 2044 HOH HOH . M 7 HOH B 45 2045 2045 HOH HOH . M 7 HOH B 46 2046 2046 HOH HOH . M 7 HOH B 47 2047 2047 HOH HOH . M 7 HOH B 48 2048 2048 HOH HOH . M 7 HOH B 49 2049 2049 HOH HOH . M 7 HOH B 50 2050 2050 HOH HOH . M 7 HOH B 51 2051 2051 HOH HOH . M 7 HOH B 52 2052 2052 HOH HOH . M 7 HOH B 53 2053 2053 HOH HOH . M 7 HOH B 54 2054 2054 HOH HOH . M 7 HOH B 55 2055 2055 HOH HOH . M 7 HOH B 56 2056 2056 HOH HOH . M 7 HOH B 57 2057 2057 HOH HOH . M 7 HOH B 58 2058 2058 HOH HOH . M 7 HOH B 59 2059 2059 HOH HOH . M 7 HOH B 60 2060 2060 HOH HOH . M 7 HOH B 61 2061 2061 HOH HOH . M 7 HOH B 62 2062 2062 HOH HOH . M 7 HOH B 63 2063 2063 HOH HOH . M 7 HOH B 64 2064 2064 HOH HOH . M 7 HOH B 65 2065 2065 HOH HOH . M 7 HOH B 66 2066 2066 HOH HOH . M 7 HOH B 67 2067 2067 HOH HOH . M 7 HOH B 68 2068 2068 HOH HOH . M 7 HOH B 69 2069 2069 HOH HOH . M 7 HOH B 70 2070 2070 HOH HOH . M 7 HOH B 71 2071 2071 HOH HOH . M 7 HOH B 72 2072 2072 HOH HOH . M 7 HOH B 73 2073 2073 HOH HOH . M 7 HOH B 74 2074 2074 HOH HOH . M 7 HOH B 75 2075 2075 HOH HOH . M 7 HOH B 76 2076 2076 HOH HOH . M 7 HOH B 77 2077 2077 HOH HOH . M 7 HOH B 78 2078 2078 HOH HOH . M 7 HOH B 79 2079 2079 HOH HOH . M 7 HOH B 80 2080 2080 HOH HOH . M 7 HOH B 81 2081 2081 HOH HOH . M 7 HOH B 82 2082 2082 HOH HOH . M 7 HOH B 83 2083 2083 HOH HOH . M 7 HOH B 84 2084 2084 HOH HOH . M 7 HOH B 85 2085 2085 HOH HOH . M 7 HOH B 86 2086 2086 HOH HOH . M 7 HOH B 87 2087 2087 HOH HOH . M 7 HOH B 88 2088 2088 HOH HOH . M 7 HOH B 89 2089 2089 HOH HOH . M 7 HOH B 90 2090 2090 HOH HOH . M 7 HOH B 91 2091 2091 HOH HOH . M 7 HOH B 92 2092 2092 HOH HOH . M 7 HOH B 93 2093 2093 HOH HOH . M 7 HOH B 94 2094 2094 HOH HOH . M 7 HOH B 95 2095 2095 HOH HOH . M 7 HOH B 96 2096 2096 HOH HOH . M 7 HOH B 97 2097 2097 HOH HOH . M 7 HOH B 98 2098 2098 HOH HOH . M 7 HOH B 99 2099 2099 HOH HOH . M 7 HOH B 100 2100 2100 HOH HOH . M 7 HOH B 101 2101 2101 HOH HOH . M 7 HOH B 102 2102 2102 HOH HOH . M 7 HOH B 103 2103 2103 HOH HOH . M 7 HOH B 104 2104 2104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . I 3 14.538 3.288 48.638 1 49.65 ? N1 H4B 760 B 1 HETATM 2 C C2 H4B . . . I 3 14.639 2.801 49.904 1 49.95 ? C2 H4B 760 B 1 HETATM 3 N N2 H4B . . . I 3 13.639 2.038 50.407 1 42.62 ? N2 H4B 760 B 1 HETATM 4 N N3 H4B . . . I 3 15.726 3.074 50.664 1 51.38 ? N3 H4B 760 B 1 HETATM 5 C C4 H4B . . . I 3 16.731 3.834 50.167 1 55.28 ? C4 H4B 760 B 1 HETATM 6 O O4 H4B . . . I 3 17.735 4.082 50.875 1 59.5 ? O4 H4B 760 B 1 HETATM 7 C C4A H4B . . . I 3 16.638 4.348 48.877 1 45.45 ? C4A H4B 760 B 1 HETATM 8 C C8A H4B . . . I 3 15.521 4.055 48.112 1 33.63 ? C8A H4B 760 B 1 HETATM 9 N N5 H4B . . . I 3 17.618 5.123 48.347 1 43.16 ? N5 H4B 760 B 1 HETATM 10 N N8 H4B . . . I 3 15.408 4.541 46.847 1 35.55 ? N8 H4B 760 B 1 HETATM 11 C C6 H4B . . . I 3 17.248 6.04 47.277 1 34.29 ? C6 H4B 760 B 1 HETATM 12 C C7 H4B . . . I 3 16.501 5.274 46.193 1 33.52 ? C7 H4B 760 B 1 HETATM 13 C C9 H4B . . . I 3 18.454 6.765 46.701 1 46.21 ? C9 H4B 760 B 1 HETATM 14 O O9 H4B . . . I 3 19.444 5.794 46.332 1 54.52 ? O9 H4B 760 B 1 HETATM 15 C C10 H4B . . . I 3 18.021 7.612 45.5 1 53.58 ? C10 H4B 760 B 1 HETATM 16 C C11 H4B . . . I 3 19.187 8.358 44.845 1 39.35 ? C11 H4B 760 B 1 HETATM 17 O O10 H4B . . . I 3 17.013 8.546 45.921 1 56.67 ? O10 H4B 760 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #