data_5ADT # _model_server_result.job_id ntljkwdLWqVFXqQgyo0fjA _model_server_result.datetime_utc '2024-12-24 19:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5adt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2116}' # _entry.id 5ADT # _exptl.entry_id 5ADT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.944 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-chloranyl-4-[[4-(4-methoxyphenyl)oxan-4-yl]methylcarbamoyl]phenyl]-2-methyl-1,3-oxazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ADT _cell.length_a 66.33 _cell.length_b 66.33 _cell.length_c 120.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ADT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 F ZN ZN . A ZN 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 F ZN ZN . A ZN 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 F ZN ZN . A ZN 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 F ZN ZN . A ZN 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C25 H26 Cl N3 O5' _chem_comp.formula_weight 483.944 _chem_comp.id 1TC _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-chloranyl-4-[[4-(4-methoxyphenyl)oxan-4-yl]methylcarbamoyl]phenyl]-2-methyl-1,3-oxazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAZ CAY 1TC sing 1 n n CAY OBA 1TC sing 2 n y CAY NAX 1TC doub 3 n y OBA CAV 1TC sing 4 n y NAX CAW 1TC sing 5 n y CAW CAV 1TC doub 6 n y CAV CAT 1TC sing 7 n n CAT OAU 1TC doub 8 n n CAT NAS 1TC sing 9 n n NAS CAR 1TC sing 10 n n CAR CAQ 1TC sing 11 n y CAR CBB 1TC doub 12 n y CAQ CAO 1TC doub 13 n y CAO CLA 1TC sing 14 n n CAO CAN 1TC sing 15 n y CBB CBC 1TC sing 16 n y CBC CAN 1TC doub 17 n y CAN CAL 1TC sing 18 n n CAL OAM 1TC doub 19 n n CAL NAK 1TC sing 20 n n NAK CAJ 1TC sing 21 n n CAJ CAI 1TC sing 22 n n CAI CBD 1TC sing 23 n n CAI CBH 1TC sing 24 n n CAI CAF 1TC sing 25 n n CBD CBE 1TC sing 26 n n CBE OBF 1TC sing 27 n n OBF CBG 1TC sing 28 n n CBG CBH 1TC sing 29 n n CAF CAE 1TC sing 30 n y CAF CAG 1TC doub 31 n y CAE CAD 1TC doub 32 n y CAD CAC 1TC sing 33 n y CAC OAB 1TC sing 34 n n CAC CAH 1TC doub 35 n y OAB CAA 1TC sing 36 n n CAH CAG 1TC sing 37 n y CAZ HAZ1 1TC sing 38 n n CAZ HAZ2 1TC sing 39 n n CAZ HAZ3 1TC sing 40 n n CAW HAW 1TC sing 41 n n NAS HAS 1TC sing 42 n n CAQ HAQ 1TC sing 43 n n CBB HBB 1TC sing 44 n n CBC HBC 1TC sing 45 n n NAK HAK 1TC sing 46 n n CAJ HAJ1 1TC sing 47 n n CAJ HAJ2 1TC sing 48 n n CBD HBD1 1TC sing 49 n n CBD HBD2 1TC sing 50 n n CBH HBH1 1TC sing 51 n n CBH HBH2 1TC sing 52 n n CBE HBE1 1TC sing 53 n n CBE HBE2 1TC sing 54 n n CBG HBG1 1TC sing 55 n n CBG HBG2 1TC sing 56 n n CAE HAE 1TC sing 57 n n CAG HAG 1TC sing 58 n n CAD HAD 1TC sing 59 n n CAH HAH 1TC sing 60 n n CAA HAA1 1TC sing 61 n n CAA HAA2 1TC sing 62 n n CAA HAA3 1TC sing 63 n n # _atom_sites.entry_id 5ADT _atom_sites.fract_transf_matrix[1][1] 0.015076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BCT A 1 2114 2114 BCT BCT . D 4 SO4 A 1 2115 2115 SO4 SO4 . E 5 1TC A 1 2116 2116 1TC 1TC . F 6 ZN A 1 2117 2117 ZN ZN . G 4 SO4 B 1 2162 2162 SO4 SO4 . H 7 HOH A 1 3001 3001 HOH HOH . H 7 HOH A 2 3002 3002 HOH HOH . H 7 HOH A 3 3003 3003 HOH HOH . H 7 HOH A 4 3004 3004 HOH HOH . H 7 HOH A 5 3005 3005 HOH HOH . H 7 HOH A 6 3006 3006 HOH HOH . H 7 HOH A 7 3007 3007 HOH HOH . H 7 HOH A 8 3008 3008 HOH HOH . H 7 HOH A 9 3009 3009 HOH HOH . H 7 HOH A 10 3010 3010 HOH HOH . H 7 HOH A 11 3011 3011 HOH HOH . H 7 HOH A 12 3012 3012 HOH HOH . H 7 HOH A 13 3013 3013 HOH HOH . H 7 HOH A 14 3014 3014 HOH HOH . H 7 HOH A 15 3015 3015 HOH HOH . H 7 HOH A 16 3016 3016 HOH HOH . H 7 HOH A 17 3017 3017 HOH HOH . H 7 HOH A 18 3018 3018 HOH HOH . H 7 HOH A 19 3019 3019 HOH HOH . H 7 HOH A 20 3020 3020 HOH HOH . H 7 HOH A 21 3021 3021 HOH HOH . H 7 HOH A 22 3022 3022 HOH HOH . H 7 HOH A 23 3023 3023 HOH HOH . H 7 HOH A 24 3024 3024 HOH HOH . H 7 HOH A 25 3025 3025 HOH HOH . H 7 HOH A 26 3026 3026 HOH HOH . H 7 HOH A 27 3027 3027 HOH HOH . H 7 HOH A 28 3028 3028 HOH HOH . H 7 HOH A 29 3029 3029 HOH HOH . H 7 HOH A 30 3030 3030 HOH HOH . H 7 HOH A 31 3031 3031 HOH HOH . H 7 HOH A 32 3032 3032 HOH HOH . H 7 HOH A 33 3033 3033 HOH HOH . H 7 HOH A 34 3034 3034 HOH HOH . H 7 HOH A 35 3035 3035 HOH HOH . H 7 HOH A 36 3036 3036 HOH HOH . H 7 HOH A 37 3037 3037 HOH HOH . H 7 HOH A 38 3038 3038 HOH HOH . H 7 HOH A 39 3039 3039 HOH HOH . H 7 HOH A 40 3040 3040 HOH HOH . H 7 HOH A 41 3041 3041 HOH HOH . H 7 HOH A 42 3042 3042 HOH HOH . H 7 HOH A 43 3043 3043 HOH HOH . H 7 HOH A 44 3044 3044 HOH HOH . H 7 HOH A 45 3045 3045 HOH HOH . H 7 HOH A 46 3046 3046 HOH HOH . H 7 HOH A 47 3047 3047 HOH HOH . H 7 HOH A 48 3048 3048 HOH HOH . H 7 HOH A 49 3049 3049 HOH HOH . H 7 HOH A 50 3050 3050 HOH HOH . H 7 HOH A 51 3051 3051 HOH HOH . H 7 HOH A 52 3052 3052 HOH HOH . H 7 HOH A 53 3053 3053 HOH HOH . H 7 HOH A 54 3054 3054 HOH HOH . H 7 HOH A 55 3055 3055 HOH HOH . H 7 HOH A 56 3056 3056 HOH HOH . H 7 HOH A 57 3057 3057 HOH HOH . H 7 HOH A 58 3058 3058 HOH HOH . H 7 HOH A 59 3059 3059 HOH HOH . H 7 HOH A 60 3060 3060 HOH HOH . H 7 HOH A 61 3061 3061 HOH HOH . H 7 HOH A 62 3062 3062 HOH HOH . H 7 HOH A 63 3063 3063 HOH HOH . H 7 HOH A 64 3064 3064 HOH HOH . H 7 HOH A 65 3065 3065 HOH HOH . H 7 HOH A 66 3066 3066 HOH HOH . H 7 HOH A 67 3067 3067 HOH HOH . H 7 HOH A 68 3068 3068 HOH HOH . H 7 HOH A 69 3069 3069 HOH HOH . H 7 HOH A 70 3070 3070 HOH HOH . H 7 HOH A 71 3071 3071 HOH HOH . H 7 HOH A 72 3072 3072 HOH HOH . H 7 HOH A 73 3073 3073 HOH HOH . H 7 HOH A 74 3074 3074 HOH HOH . H 7 HOH A 75 3075 3075 HOH HOH . H 7 HOH A 76 3076 3076 HOH HOH . H 7 HOH A 77 3077 3077 HOH HOH . H 7 HOH A 78 3078 3078 HOH HOH . H 7 HOH A 79 3079 3079 HOH HOH . H 7 HOH A 80 3080 3080 HOH HOH . H 7 HOH A 81 3081 3081 HOH HOH . H 7 HOH A 82 3082 3082 HOH HOH . H 7 HOH A 83 3083 3083 HOH HOH . H 7 HOH A 84 3084 3084 HOH HOH . H 7 HOH A 85 3085 3085 HOH HOH . H 7 HOH A 86 3086 3086 HOH HOH . H 7 HOH A 87 3087 3087 HOH HOH . H 7 HOH A 88 3088 3088 HOH HOH . H 7 HOH A 89 3089 3089 HOH HOH . H 7 HOH A 90 3090 3090 HOH HOH . H 7 HOH A 91 3091 3091 HOH HOH . H 7 HOH A 92 3092 3092 HOH HOH . H 7 HOH A 93 3093 3093 HOH HOH . H 7 HOH A 94 3094 3094 HOH HOH . H 7 HOH A 95 3095 3095 HOH HOH . H 7 HOH A 96 3096 3096 HOH HOH . H 7 HOH A 97 3097 3097 HOH HOH . H 7 HOH A 98 3098 3098 HOH HOH . H 7 HOH A 99 3099 3099 HOH HOH . H 7 HOH A 100 3100 3100 HOH HOH . H 7 HOH A 101 3101 3101 HOH HOH . H 7 HOH A 102 3102 3102 HOH HOH . H 7 HOH A 103 3103 3103 HOH HOH . H 7 HOH A 104 3104 3104 HOH HOH . H 7 HOH A 105 3105 3105 HOH HOH . H 7 HOH A 106 3106 3106 HOH HOH . H 7 HOH A 107 3107 3107 HOH HOH . H 7 HOH A 108 3108 3108 HOH HOH . H 7 HOH A 109 3109 3109 HOH HOH . I 7 HOH B 1 3001 3001 HOH HOH . I 7 HOH B 2 3002 3002 HOH HOH . I 7 HOH B 3 3003 3003 HOH HOH . I 7 HOH B 4 3004 3004 HOH HOH . I 7 HOH B 5 3005 3005 HOH HOH . I 7 HOH B 6 3006 3006 HOH HOH . I 7 HOH B 7 3007 3007 HOH HOH . I 7 HOH B 8 3008 3008 HOH HOH . I 7 HOH B 9 3009 3009 HOH HOH . I 7 HOH B 10 3010 3010 HOH HOH . I 7 HOH B 11 3011 3011 HOH HOH . I 7 HOH B 12 3012 3012 HOH HOH . I 7 HOH B 13 3013 3013 HOH HOH . I 7 HOH B 14 3014 3014 HOH HOH . I 7 HOH B 15 3015 3015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAZ 1TC . . . E 5 4.82 -4.663 26.648 1 51.99 ? CAZ 1TC 2116 A 1 HETATM 2 C CAY 1TC . . . E 5 4.298 -4.136 25.29 1 47.51 ? CAY 1TC 2116 A 1 HETATM 3 O OBA 1TC . . . E 5 4.881 -3.144 24.617 1 46.09 ? OBA 1TC 2116 A 1 HETATM 4 N NAX 1TC . . . E 5 3.23 -4.58 24.633 1 44.63 ? NAX 1TC 2116 A 1 HETATM 5 C CAW 1TC . . . E 5 3.134 -3.827 23.521 1 43.82 ? CAW 1TC 2116 A 1 HETATM 6 C CAV 1TC . . . E 5 4.146 -2.957 23.491 1 41.79 ? CAV 1TC 2116 A 1 HETATM 7 C CAT 1TC . . . E 5 4.426 -2.022 22.548 1 39.1 ? CAT 1TC 2116 A 1 HETATM 8 O OAU 1TC . . . E 5 3.699 -1.847 21.568 1 39.13 ? OAU 1TC 2116 A 1 HETATM 9 N NAS 1TC . . . E 5 5.465 -1.251 22.88 1 36.99 ? NAS 1TC 2116 A 1 HETATM 10 C CAR 1TC . . . E 5 6.03 -0.304 22.128 1 39.47 ? CAR 1TC 2116 A 1 HETATM 11 C CAQ 1TC . . . E 5 6.755 0.706 22.746 1 42.93 ? CAQ 1TC 2116 A 1 HETATM 12 C CAO 1TC . . . E 5 7.431 1.705 22.027 1 48.32 ? CAO 1TC 2116 A 1 HETATM 13 CL CLA 1TC . . . E 5 8.313 3.027 22.974 1 75.9 ? CLA 1TC 2116 A 1 HETATM 14 C CBB 1TC . . . E 5 6.027 -0.322 20.762 1 38.79 ? CBB 1TC 2116 A 1 HETATM 15 C CBC 1TC . . . E 5 6.699 0.662 20.04 1 39.47 ? CBC 1TC 2116 A 1 HETATM 16 C CAN 1TC . . . E 5 7.41 1.706 20.62 1 42.86 ? CAN 1TC 2116 A 1 HETATM 17 C CAL 1TC . . . E 5 8.093 2.617 19.75 1 39.04 ? CAL 1TC 2116 A 1 HETATM 18 O OAM 1TC . . . E 5 7.928 2.603 18.527 1 34.53 ? OAM 1TC 2116 A 1 HETATM 19 N NAK 1TC . . . E 5 9.148 3.289 20.233 1 37.89 ? NAK 1TC 2116 A 1 HETATM 20 C CAJ 1TC . . . E 5 9.985 4.071 19.35 1 40.12 ? CAJ 1TC 2116 A 1 HETATM 21 C CAI 1TC . . . E 5 10.833 5.123 20.11 1 40.73 ? CAI 1TC 2116 A 1 HETATM 22 C CBD 1TC . . . E 5 9.857 6.105 20.779 1 42.96 ? CBD 1TC 2116 A 1 HETATM 23 C CBE 1TC . . . E 5 10.219 7.541 20.423 1 44.33 ? CBE 1TC 2116 A 1 HETATM 24 O OBF 1TC . . . E 5 11.643 7.772 20.464 1 47.2 ? OBF 1TC 2116 A 1 HETATM 25 C CBG 1TC . . . E 5 12.275 7.173 19.341 1 42.33 ? CBG 1TC 2116 A 1 HETATM 26 C CBH 1TC . . . E 5 11.645 5.793 18.995 1 38.79 ? CBH 1TC 2116 A 1 HETATM 27 C CAF 1TC . . . E 5 11.661 4.378 21.095 1 39.92 ? CAF 1TC 2116 A 1 HETATM 28 C CAE 1TC . . . E 5 11.449 4.385 22.507 1 40.13 ? CAE 1TC 2116 A 1 HETATM 29 C CAD 1TC . . . E 5 12.219 3.648 23.422 1 37.59 ? CAD 1TC 2116 A 1 HETATM 30 C CAC 1TC . . . E 5 13.265 2.835 22.934 1 37.7 ? CAC 1TC 2116 A 1 HETATM 31 O OAB 1TC . . . E 5 14.119 2.087 23.697 1 34.58 ? OAB 1TC 2116 A 1 HETATM 32 C CAA 1TC . . . E 5 13.976 2.085 25.163 1 36.03 ? CAA 1TC 2116 A 1 HETATM 33 C CAH 1TC . . . E 5 13.485 2.827 21.559 1 38.39 ? CAH 1TC 2116 A 1 HETATM 34 C CAG 1TC . . . E 5 12.715 3.558 20.666 1 39.07 ? CAG 1TC 2116 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 162 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #