data_5ADV
#
_model_server_result.job_id            3uIV9Wq3GKV-OU9HcAaU2Q 
_model_server_result.datetime_utc      '2024-11-06 16:29:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5adv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1310}' 
#
_entry.id    5ADV 
#
_exptl.entry_id    5ADV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         83.09 
_cell.angle_beta          76.9 
_cell.angle_gamma         79.21 
_cell.entry_id            5ADV 
_cell.length_a            58.07 
_cell.length_b            63.09 
_cell.length_c            67.16 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ADV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,O 1 1 
C,L,M,N,Q 2 1 
B,H,I,J,K,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 204 A HIS 227 1_555 D FE FE . A FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc2 A OH TYR 265 A TYR 288 1_555 D FE FE . A FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? 
metalc ? metalc3 D FE FE . A FE 1311 1_555 E O4 DBS . A DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc4 D FE FE . A FE 1311 1_555 E O1 DBS . A DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc5 D FE FE . A FE 1311 1_555 F O4 DBS . A DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc6 D FE FE . A FE 1311 1_555 F O1 DBS . A DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc7 B NE2 HIS 204 B HIS 227 1_555 J FE FE . B FE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc8 B OH TYR 265 B TYR 288 1_555 J FE FE . B FE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc9 J FE FE . B FE 1312 1_555 K O36 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc10 J FE FE . B FE 1312 1_555 K O37 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc11 J FE FE . B FE 1312 1_555 K O8 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc12 J FE FE . B FE 1312 1_555 K O7 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc13 C NE2 HIS 204 C HIS 227 1_555 L FE FE . C FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc14 C OH TYR 265 C TYR 288 1_555 L FE FE . C FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc15 L FE FE . C FE 1311 1_555 M O4 DBS . C DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc16 L FE FE . C FE 1311 1_555 M O1 DBS . C DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc17 L FE FE . C FE 1311 1_555 N O1 DBS . C DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc18 L FE FE . C FE 1311 1_555 N O4 DBS . C DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 98 n n 
S C1 DMS sing 99 n n 
S C2 DMS sing 100 n n 
C1 H11 DMS sing 101 n n 
C1 H12 DMS sing 102 n n 
C1 H13 DMS sing 103 n n 
C2 H21 DMS sing 104 n n 
C2 H22 DMS sing 105 n n 
C2 H23 DMS sing 106 n n 
#
_atom_sites.entry_id                     5ADV 
_atom_sites.fract_transf_matrix[1][1]    0.017221 
_atom_sites.fract_transf_matrix[1][2]    -0.003282 
_atom_sites.fract_transf_matrix[1][3]    -0.003753 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016136 
_atom_sites.fract_transf_matrix[2][3]    -0.001318 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FE A 1 1311 1311 FE FE . 
E 3 DBS A 1 1312 1312 DBS DBS . 
F 3 DBS A 1 1313 1313 DBS DBS . 
G 4 DMS A 1 1314 1314 DMS DMS . 
H 4 DMS B 1 1310 1310 DMS DMS . 
I 4 DMS B 1 1311 1311 DMS DMS . 
J 2 FE B 1 1312 1312 FE FE . 
K 5 EHS B 1 1313 1313 EHS EHS . 
L 2 FE C 1 1311 1311 FE FE . 
M 3 DBS C 1 1312 1312 DBS DBS . 
N 3 DBS C 1 1313 1313 DBS DBS . 
O 6 HOH A 1 2001 2001 HOH HOH . 
O 6 HOH A 2 2002 2002 HOH HOH . 
O 6 HOH A 3 2003 2003 HOH HOH . 
O 6 HOH A 4 2004 2004 HOH HOH . 
O 6 HOH A 5 2005 2005 HOH HOH . 
O 6 HOH A 6 2006 2006 HOH HOH . 
O 6 HOH A 7 2007 2007 HOH HOH . 
O 6 HOH A 8 2008 2008 HOH HOH . 
O 6 HOH A 9 2009 2009 HOH HOH . 
O 6 HOH A 10 2010 2010 HOH HOH . 
O 6 HOH A 11 2011 2011 HOH HOH . 
O 6 HOH A 12 2012 2012 HOH HOH . 
O 6 HOH A 13 2013 2013 HOH HOH . 
O 6 HOH A 14 2014 2014 HOH HOH . 
O 6 HOH A 15 2015 2015 HOH HOH . 
O 6 HOH A 16 2016 2016 HOH HOH . 
O 6 HOH A 17 2017 2017 HOH HOH . 
O 6 HOH A 18 2018 2018 HOH HOH . 
O 6 HOH A 19 2019 2019 HOH HOH . 
O 6 HOH A 20 2020 2020 HOH HOH . 
O 6 HOH A 21 2021 2021 HOH HOH . 
O 6 HOH A 22 2022 2022 HOH HOH . 
O 6 HOH A 23 2023 2023 HOH HOH . 
O 6 HOH A 24 2024 2024 HOH HOH . 
O 6 HOH A 25 2025 2025 HOH HOH . 
O 6 HOH A 26 2026 2026 HOH HOH . 
O 6 HOH A 27 2027 2027 HOH HOH . 
O 6 HOH A 28 2028 2028 HOH HOH . 
O 6 HOH A 29 2029 2029 HOH HOH . 
O 6 HOH A 30 2030 2030 HOH HOH . 
O 6 HOH A 31 2031 2031 HOH HOH . 
O 6 HOH A 32 2032 2032 HOH HOH . 
O 6 HOH A 33 2033 2033 HOH HOH . 
O 6 HOH A 34 2034 2034 HOH HOH . 
O 6 HOH A 35 2035 2035 HOH HOH . 
O 6 HOH A 36 2036 2036 HOH HOH . 
O 6 HOH A 37 2037 2037 HOH HOH . 
O 6 HOH A 38 2038 2038 HOH HOH . 
O 6 HOH A 39 2039 2039 HOH HOH . 
O 6 HOH A 40 2040 2040 HOH HOH . 
O 6 HOH A 41 2041 2041 HOH HOH . 
O 6 HOH A 42 2042 2042 HOH HOH . 
O 6 HOH A 43 2043 2043 HOH HOH . 
O 6 HOH A 44 2044 2044 HOH HOH . 
O 6 HOH A 45 2045 2045 HOH HOH . 
O 6 HOH A 46 2046 2046 HOH HOH . 
O 6 HOH A 47 2047 2047 HOH HOH . 
O 6 HOH A 48 2048 2048 HOH HOH . 
O 6 HOH A 49 2049 2049 HOH HOH . 
O 6 HOH A 50 2050 2050 HOH HOH . 
O 6 HOH A 51 2051 2051 HOH HOH . 
O 6 HOH A 52 2052 2052 HOH HOH . 
P 6 HOH B 1 2001 2001 HOH HOH . 
P 6 HOH B 2 2002 2002 HOH HOH . 
P 6 HOH B 3 2003 2003 HOH HOH . 
P 6 HOH B 4 2004 2004 HOH HOH . 
P 6 HOH B 5 2005 2005 HOH HOH . 
P 6 HOH B 6 2006 2006 HOH HOH . 
P 6 HOH B 7 2007 2007 HOH HOH . 
P 6 HOH B 8 2008 2008 HOH HOH . 
P 6 HOH B 9 2009 2009 HOH HOH . 
P 6 HOH B 10 2010 2010 HOH HOH . 
P 6 HOH B 11 2011 2011 HOH HOH . 
P 6 HOH B 12 2012 2012 HOH HOH . 
P 6 HOH B 13 2013 2013 HOH HOH . 
P 6 HOH B 14 2014 2014 HOH HOH . 
P 6 HOH B 15 2015 2015 HOH HOH . 
P 6 HOH B 16 2016 2016 HOH HOH . 
P 6 HOH B 17 2017 2017 HOH HOH . 
P 6 HOH B 18 2018 2018 HOH HOH . 
P 6 HOH B 19 2019 2019 HOH HOH . 
P 6 HOH B 20 2020 2020 HOH HOH . 
P 6 HOH B 21 2021 2021 HOH HOH . 
P 6 HOH B 22 2022 2022 HOH HOH . 
P 6 HOH B 23 2023 2023 HOH HOH . 
P 6 HOH B 24 2024 2024 HOH HOH . 
P 6 HOH B 25 2025 2025 HOH HOH . 
P 6 HOH B 26 2026 2026 HOH HOH . 
P 6 HOH B 27 2027 2027 HOH HOH . 
P 6 HOH B 28 2028 2028 HOH HOH . 
P 6 HOH B 29 2029 2029 HOH HOH . 
P 6 HOH B 30 2030 2030 HOH HOH . 
P 6 HOH B 31 2031 2031 HOH HOH . 
P 6 HOH B 32 2032 2032 HOH HOH . 
P 6 HOH B 33 2033 2033 HOH HOH . 
P 6 HOH B 34 2034 2034 HOH HOH . 
P 6 HOH B 35 2035 2035 HOH HOH . 
P 6 HOH B 36 2036 2036 HOH HOH . 
P 6 HOH B 37 2037 2037 HOH HOH . 
P 6 HOH B 38 2038 2038 HOH HOH . 
P 6 HOH B 39 2039 2039 HOH HOH . 
P 6 HOH B 40 2040 2040 HOH HOH . 
P 6 HOH B 41 2041 2041 HOH HOH . 
P 6 HOH B 42 2042 2042 HOH HOH . 
Q 6 HOH C 1 2001 2001 HOH HOH . 
Q 6 HOH C 2 2002 2002 HOH HOH . 
Q 6 HOH C 3 2003 2003 HOH HOH . 
Q 6 HOH C 4 2004 2004 HOH HOH . 
Q 6 HOH C 5 2005 2005 HOH HOH . 
Q 6 HOH C 6 2006 2006 HOH HOH . 
Q 6 HOH C 7 2007 2007 HOH HOH . 
Q 6 HOH C 8 2008 2008 HOH HOH . 
Q 6 HOH C 9 2009 2009 HOH HOH . 
Q 6 HOH C 10 2010 2010 HOH HOH . 
Q 6 HOH C 11 2011 2011 HOH HOH . 
Q 6 HOH C 12 2012 2012 HOH HOH . 
Q 6 HOH C 13 2013 2013 HOH HOH . 
Q 6 HOH C 14 2014 2014 HOH HOH . 
Q 6 HOH C 15 2015 2015 HOH HOH . 
Q 6 HOH C 16 2016 2016 HOH HOH . 
Q 6 HOH C 17 2017 2017 HOH HOH . 
Q 6 HOH C 18 2018 2018 HOH HOH . 
Q 6 HOH C 19 2019 2019 HOH HOH . 
Q 6 HOH C 20 2020 2020 HOH HOH . 
Q 6 HOH C 21 2021 2021 HOH HOH . 
Q 6 HOH C 22 2022 2022 HOH HOH . 
Q 6 HOH C 23 2023 2023 HOH HOH . 
Q 6 HOH C 24 2024 2024 HOH HOH . 
Q 6 HOH C 25 2025 2025 HOH HOH . 
Q 6 HOH C 26 2026 2026 HOH HOH . 
Q 6 HOH C 27 2027 2027 HOH HOH . 
Q 6 HOH C 28 2028 2028 HOH HOH . 
Q 6 HOH C 29 2029 2029 HOH HOH . 
Q 6 HOH C 30 2030 2030 HOH HOH . 
Q 6 HOH C 31 2031 2031 HOH HOH . 
Q 6 HOH C 32 2032 2032 HOH HOH . 
Q 6 HOH C 33 2033 2033 HOH HOH . 
Q 6 HOH C 34 2034 2034 HOH HOH . 
Q 6 HOH C 35 2035 2035 HOH HOH . 
Q 6 HOH C 36 2036 2036 HOH HOH . 
Q 6 HOH C 37 2037 2037 HOH HOH . 
Q 6 HOH C 38 2038 2038 HOH HOH . 
Q 6 HOH C 39 2039 2039 HOH HOH . 
Q 6 HOH C 40 2040 2040 HOH HOH . 
Q 6 HOH C 41 2041 2041 HOH HOH . 
Q 6 HOH C 42 2042 2042 HOH HOH . 
Q 6 HOH C 43 2043 2043 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 4 -0.084 -3.156 2.713 1 58.61 ? S DMS 1310 B 1 
HETATM 2 O O DMS . . . H 4 1.284 -3.624 3.08 1 45.97 ? O DMS 1310 B 1 
HETATM 3 C C1 DMS . . . H 4 -0.144 -2.214 1.283 1 44.84 ? C1 DMS 1310 B 1 
HETATM 4 C C2 DMS . . . H 4 -0.793 -2.147 3.938 1 50.19 ? C2 DMS 1310 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#