data_5ADV # _model_server_result.job_id JvsrKgNQv5_3m3QrTh4ujw _model_server_result.datetime_utc '2024-11-24 15:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5adv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1312}' # _entry.id 5ADV # _exptl.entry_id 5ADV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.197 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.09 _cell.angle_beta 76.9 _cell.angle_gamma 79.21 _cell.entry_id 5ADV _cell.length_a 58.07 _cell.length_b 63.09 _cell.length_c 67.16 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ADV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,O 1 1 C,L,M,N,Q 2 1 B,H,I,J,K,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 204 A HIS 227 1_555 D FE FE . A FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc2 A OH TYR 265 A TYR 288 1_555 D FE FE . A FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc3 D FE FE . A FE 1311 1_555 E O4 DBS . A DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 D FE FE . A FE 1311 1_555 E O1 DBS . A DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 D FE FE . A FE 1311 1_555 F O4 DBS . A DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 D FE FE . A FE 1311 1_555 F O1 DBS . A DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 B NE2 HIS 204 B HIS 227 1_555 J FE FE . B FE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc8 B OH TYR 265 B TYR 288 1_555 J FE FE . B FE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc9 J FE FE . B FE 1312 1_555 K O36 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc10 J FE FE . B FE 1312 1_555 K O37 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc11 J FE FE . B FE 1312 1_555 K O8 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc12 J FE FE . B FE 1312 1_555 K O7 EHS . B EHS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc13 C NE2 HIS 204 C HIS 227 1_555 L FE FE . C FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc14 C OH TYR 265 C TYR 288 1_555 L FE FE . C FE 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc15 L FE FE . C FE 1311 1_555 M O4 DBS . C DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc16 L FE FE . C FE 1311 1_555 M O1 DBS . C DBS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc17 L FE FE . C FE 1311 1_555 N O1 DBS . C DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc18 L FE FE . C FE 1311 1_555 N O4 DBS . C DBS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? # _chem_comp.formula 'C10 H11 N O6' _chem_comp.formula_weight 241.197 _chem_comp.id DBS _chem_comp.mon_nstd_flag n _chem_comp.name '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 2,3,-DIHYDROXYBENZOYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 DBS sing 70 n n O4 HO4 DBS sing 71 n n C4 C7 DBS doub 72 n y C4 C1 DBS sing 73 n y C7 C10 DBS sing 74 n y C7 HC7 DBS sing 75 n n C1 O1 DBS sing 76 n n C1 C16 DBS doub 77 n y O1 HO1 DBS sing 78 n n C16 C13 DBS sing 79 n y C16 C19 DBS sing 80 n n C13 C10 DBS doub 81 n y C13 HC13 DBS sing 82 n n C10 HC10 DBS sing 83 n n C19 O7 DBS doub 84 n n C19 N1 DBS sing 85 n n N1 C22 DBS sing 86 n n N1 HN1 DBS sing 87 n n C22 C28 DBS sing 88 n n C22 C25 DBS sing 89 n n C22 HC22 DBS sing 90 n n C28 O13 DBS sing 91 n n C28 H281 DBS sing 92 n n C28 H282 DBS sing 93 n n O13 HO13 DBS sing 94 n n C25 O10 DBS doub 95 n n C25 O15 DBS sing 96 n n O15 HO15 DBS sing 97 n n # _atom_sites.entry_id 5ADV _atom_sites.fract_transf_matrix[1][1] 0.017221 _atom_sites.fract_transf_matrix[1][2] -0.003282 _atom_sites.fract_transf_matrix[1][3] -0.003753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016136 _atom_sites.fract_transf_matrix[2][3] -0.001318 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 1311 1311 FE FE . E 3 DBS A 1 1312 1312 DBS DBS . F 3 DBS A 1 1313 1313 DBS DBS . G 4 DMS A 1 1314 1314 DMS DMS . H 4 DMS B 1 1310 1310 DMS DMS . I 4 DMS B 1 1311 1311 DMS DMS . J 2 FE B 1 1312 1312 FE FE . K 5 EHS B 1 1313 1313 EHS EHS . L 2 FE C 1 1311 1311 FE FE . M 3 DBS C 1 1312 1312 DBS DBS . N 3 DBS C 1 1313 1313 DBS DBS . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . O 6 HOH A 41 2041 2041 HOH HOH . O 6 HOH A 42 2042 2042 HOH HOH . O 6 HOH A 43 2043 2043 HOH HOH . O 6 HOH A 44 2044 2044 HOH HOH . O 6 HOH A 45 2045 2045 HOH HOH . O 6 HOH A 46 2046 2046 HOH HOH . O 6 HOH A 47 2047 2047 HOH HOH . O 6 HOH A 48 2048 2048 HOH HOH . O 6 HOH A 49 2049 2049 HOH HOH . O 6 HOH A 50 2050 2050 HOH HOH . O 6 HOH A 51 2051 2051 HOH HOH . O 6 HOH A 52 2052 2052 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . P 6 HOH B 9 2009 2009 HOH HOH . P 6 HOH B 10 2010 2010 HOH HOH . P 6 HOH B 11 2011 2011 HOH HOH . P 6 HOH B 12 2012 2012 HOH HOH . P 6 HOH B 13 2013 2013 HOH HOH . P 6 HOH B 14 2014 2014 HOH HOH . P 6 HOH B 15 2015 2015 HOH HOH . P 6 HOH B 16 2016 2016 HOH HOH . P 6 HOH B 17 2017 2017 HOH HOH . P 6 HOH B 18 2018 2018 HOH HOH . P 6 HOH B 19 2019 2019 HOH HOH . P 6 HOH B 20 2020 2020 HOH HOH . P 6 HOH B 21 2021 2021 HOH HOH . P 6 HOH B 22 2022 2022 HOH HOH . P 6 HOH B 23 2023 2023 HOH HOH . P 6 HOH B 24 2024 2024 HOH HOH . P 6 HOH B 25 2025 2025 HOH HOH . P 6 HOH B 26 2026 2026 HOH HOH . P 6 HOH B 27 2027 2027 HOH HOH . P 6 HOH B 28 2028 2028 HOH HOH . P 6 HOH B 29 2029 2029 HOH HOH . P 6 HOH B 30 2030 2030 HOH HOH . P 6 HOH B 31 2031 2031 HOH HOH . P 6 HOH B 32 2032 2032 HOH HOH . P 6 HOH B 33 2033 2033 HOH HOH . P 6 HOH B 34 2034 2034 HOH HOH . P 6 HOH B 35 2035 2035 HOH HOH . P 6 HOH B 36 2036 2036 HOH HOH . P 6 HOH B 37 2037 2037 HOH HOH . P 6 HOH B 38 2038 2038 HOH HOH . P 6 HOH B 39 2039 2039 HOH HOH . P 6 HOH B 40 2040 2040 HOH HOH . P 6 HOH B 41 2041 2041 HOH HOH . P 6 HOH B 42 2042 2042 HOH HOH . Q 6 HOH C 1 2001 2001 HOH HOH . Q 6 HOH C 2 2002 2002 HOH HOH . Q 6 HOH C 3 2003 2003 HOH HOH . Q 6 HOH C 4 2004 2004 HOH HOH . Q 6 HOH C 5 2005 2005 HOH HOH . Q 6 HOH C 6 2006 2006 HOH HOH . Q 6 HOH C 7 2007 2007 HOH HOH . Q 6 HOH C 8 2008 2008 HOH HOH . Q 6 HOH C 9 2009 2009 HOH HOH . Q 6 HOH C 10 2010 2010 HOH HOH . Q 6 HOH C 11 2011 2011 HOH HOH . Q 6 HOH C 12 2012 2012 HOH HOH . Q 6 HOH C 13 2013 2013 HOH HOH . Q 6 HOH C 14 2014 2014 HOH HOH . Q 6 HOH C 15 2015 2015 HOH HOH . Q 6 HOH C 16 2016 2016 HOH HOH . Q 6 HOH C 17 2017 2017 HOH HOH . Q 6 HOH C 18 2018 2018 HOH HOH . Q 6 HOH C 19 2019 2019 HOH HOH . Q 6 HOH C 20 2020 2020 HOH HOH . Q 6 HOH C 21 2021 2021 HOH HOH . Q 6 HOH C 22 2022 2022 HOH HOH . Q 6 HOH C 23 2023 2023 HOH HOH . Q 6 HOH C 24 2024 2024 HOH HOH . Q 6 HOH C 25 2025 2025 HOH HOH . Q 6 HOH C 26 2026 2026 HOH HOH . Q 6 HOH C 27 2027 2027 HOH HOH . Q 6 HOH C 28 2028 2028 HOH HOH . Q 6 HOH C 29 2029 2029 HOH HOH . Q 6 HOH C 30 2030 2030 HOH HOH . Q 6 HOH C 31 2031 2031 HOH HOH . Q 6 HOH C 32 2032 2032 HOH HOH . Q 6 HOH C 33 2033 2033 HOH HOH . Q 6 HOH C 34 2034 2034 HOH HOH . Q 6 HOH C 35 2035 2035 HOH HOH . Q 6 HOH C 36 2036 2036 HOH HOH . Q 6 HOH C 37 2037 2037 HOH HOH . Q 6 HOH C 38 2038 2038 HOH HOH . Q 6 HOH C 39 2039 2039 HOH HOH . Q 6 HOH C 40 2040 2040 HOH HOH . Q 6 HOH C 41 2041 2041 HOH HOH . Q 6 HOH C 42 2042 2042 HOH HOH . Q 6 HOH C 43 2043 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 DBS . . . M 3 32.18 26.042 8.943 1 45.53 ? O4 DBS 1312 C 1 HETATM 2 C C4 DBS . . . M 3 32.799 24.968 8.375 1 48.45 ? C4 DBS 1312 C 1 HETATM 3 C C7 DBS . . . M 3 33.083 23.841 9.168 1 51.85 ? C7 DBS 1312 C 1 HETATM 4 C C1 DBS . . . M 3 33.119 24.995 7.021 1 48.89 ? C1 DBS 1312 C 1 HETATM 5 O O1 DBS . . . M 3 32.818 26.131 6.276 1 39.69 ? O1 DBS 1312 C 1 HETATM 6 C C16 DBS . . . M 3 33.754 23.852 6.478 1 52.25 ? C16 DBS 1312 C 1 HETATM 7 C C13 DBS . . . M 3 34.034 22.73 7.274 1 51.35 ? C13 DBS 1312 C 1 HETATM 8 C C10 DBS . . . M 3 33.701 22.729 8.623 1 50.18 ? C10 DBS 1312 C 1 HETATM 9 C C19 DBS . . . M 3 34.102 23.826 5.022 1 57.35 ? C19 DBS 1312 C 1 HETATM 10 O O7 DBS . . . M 3 34.039 24.889 4.419 1 60.53 ? O7 DBS 1312 C 1 HETATM 11 N N1 DBS . . . M 3 34.41 22.667 4.411 1 66.92 ? N1 DBS 1312 C 1 HETATM 12 C C22 DBS . . . M 3 34.743 22.56 2.983 1 75.67 ? C22 DBS 1312 C 1 HETATM 13 C C28 DBS . . . M 3 33.582 22.922 2.019 1 77.67 ? C28 DBS 1312 C 1 HETATM 14 O O13 DBS . . . M 3 32.649 21.842 1.811 1 73.7 ? O13 DBS 1312 C 1 HETATM 15 C C25 DBS . . . M 3 35.996 23.367 2.722 1 76.91 ? C25 DBS 1312 C 1 HETATM 16 O O10 DBS . . . M 3 37.059 22.899 3.174 1 82.25 ? O10 DBS 1312 C 1 HETATM 17 O O15 DBS . . . M 3 35.955 24.466 2.114 1 74.61 ? O15 DBS 1312 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #