data_5AF4 # _model_server_result.job_id k5SV_rSyZALQV1LihgsuYA _model_server_result.datetime_utc '2024-11-25 14:10:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5af4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1076}' # _entry.id 5AF4 # _exptl.entry_id 5AF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AF4 _cell.length_a 113.075 _cell.length_b 113.075 _cell.length_c 103.899 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,X,Y 1 1 G,H,DA,EA 2 1 E,F,V,W,BA,CA 3 1 C,D,N,O,P,Q,R,S,T,U,Z,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5AF4 _atom_sites.fract_transf_matrix[1][1] 0.008844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL A 1 1077 1077 GOL GOL . J 3 SO4 A 1 1078 1078 SO4 SO4 . K 2 GOL B 1 1076 1076 GOL GOL . L 2 GOL B 1 1077 1077 GOL GOL . M 3 SO4 B 1 1078 1078 SO4 SO4 . N 3 SO4 C 1 1077 1077 SO4 SO4 . O 3 SO4 C 1 1078 1078 SO4 SO4 . P 3 SO4 C 1 1079 1079 SO4 SO4 . Q 2 GOL D 1 1076 1076 GOL GOL . R 2 GOL D 1 1077 1077 GOL GOL . S 2 GOL D 1 1078 1078 GOL GOL . T 2 GOL D 1 1079 1079 GOL GOL . U 3 SO4 D 1 1080 1080 SO4 SO4 . V 2 GOL E 1 1077 1077 GOL GOL . W 2 GOL F 1 1075 1075 GOL GOL . X 4 HOH A 1 2001 2001 HOH HOH . X 4 HOH A 2 2002 2002 HOH HOH . X 4 HOH A 3 2003 2003 HOH HOH . X 4 HOH A 4 2004 2004 HOH HOH . X 4 HOH A 5 2005 2005 HOH HOH . X 4 HOH A 6 2006 2006 HOH HOH . X 4 HOH A 7 2007 2007 HOH HOH . X 4 HOH A 8 2008 2008 HOH HOH . X 4 HOH A 9 2009 2009 HOH HOH . X 4 HOH A 10 2010 2010 HOH HOH . X 4 HOH A 11 2011 2011 HOH HOH . X 4 HOH A 12 2012 2012 HOH HOH . X 4 HOH A 13 2013 2013 HOH HOH . X 4 HOH A 14 2014 2014 HOH HOH . X 4 HOH A 15 2015 2015 HOH HOH . X 4 HOH A 16 2016 2016 HOH HOH . X 4 HOH A 17 2017 2017 HOH HOH . X 4 HOH A 18 2018 2018 HOH HOH . X 4 HOH A 19 2019 2019 HOH HOH . X 4 HOH A 20 2020 2020 HOH HOH . X 4 HOH A 21 2021 2021 HOH HOH . X 4 HOH A 22 2022 2022 HOH HOH . X 4 HOH A 23 2023 2023 HOH HOH . X 4 HOH A 24 2024 2024 HOH HOH . X 4 HOH A 25 2025 2025 HOH HOH . X 4 HOH A 26 2026 2026 HOH HOH . X 4 HOH A 27 2027 2027 HOH HOH . X 4 HOH A 28 2028 2028 HOH HOH . X 4 HOH A 29 2029 2029 HOH HOH . X 4 HOH A 30 2030 2030 HOH HOH . X 4 HOH A 31 2031 2031 HOH HOH . X 4 HOH A 32 2032 2032 HOH HOH . X 4 HOH A 33 2033 2033 HOH HOH . X 4 HOH A 34 2034 2034 HOH HOH . X 4 HOH A 35 2035 2035 HOH HOH . X 4 HOH A 36 2036 2036 HOH HOH . X 4 HOH A 37 2037 2037 HOH HOH . X 4 HOH A 38 2038 2038 HOH HOH . X 4 HOH A 39 2039 2039 HOH HOH . X 4 HOH A 40 2040 2040 HOH HOH . X 4 HOH A 41 2041 2041 HOH HOH . Y 4 HOH B 1 2001 2001 HOH HOH . Y 4 HOH B 2 2002 2002 HOH HOH . Y 4 HOH B 3 2003 2003 HOH HOH . Y 4 HOH B 4 2004 2004 HOH HOH . Y 4 HOH B 5 2005 2005 HOH HOH . Y 4 HOH B 6 2006 2006 HOH HOH . Y 4 HOH B 7 2007 2007 HOH HOH . Y 4 HOH B 8 2008 2008 HOH HOH . Y 4 HOH B 9 2009 2009 HOH HOH . Y 4 HOH B 10 2010 2010 HOH HOH . Y 4 HOH B 11 2011 2011 HOH HOH . Y 4 HOH B 12 2012 2012 HOH HOH . Y 4 HOH B 13 2013 2013 HOH HOH . Y 4 HOH B 14 2014 2014 HOH HOH . Y 4 HOH B 15 2015 2015 HOH HOH . Y 4 HOH B 16 2016 2016 HOH HOH . Y 4 HOH B 17 2017 2017 HOH HOH . Y 4 HOH B 18 2018 2018 HOH HOH . Y 4 HOH B 19 2019 2019 HOH HOH . Y 4 HOH B 20 2020 2020 HOH HOH . Z 4 HOH C 1 2001 2001 HOH HOH . Z 4 HOH C 2 2002 2002 HOH HOH . Z 4 HOH C 3 2003 2003 HOH HOH . Z 4 HOH C 4 2004 2004 HOH HOH . Z 4 HOH C 5 2005 2005 HOH HOH . Z 4 HOH C 6 2006 2006 HOH HOH . Z 4 HOH C 7 2007 2007 HOH HOH . Z 4 HOH C 8 2008 2008 HOH HOH . Z 4 HOH C 9 2009 2009 HOH HOH . Z 4 HOH C 10 2010 2010 HOH HOH . Z 4 HOH C 11 2011 2011 HOH HOH . Z 4 HOH C 12 2012 2012 HOH HOH . Z 4 HOH C 13 2013 2013 HOH HOH . Z 4 HOH C 14 2014 2014 HOH HOH . Z 4 HOH C 15 2015 2015 HOH HOH . Z 4 HOH C 16 2016 2016 HOH HOH . Z 4 HOH C 17 2017 2017 HOH HOH . Z 4 HOH C 18 2018 2018 HOH HOH . Z 4 HOH C 19 2019 2019 HOH HOH . Z 4 HOH C 20 2020 2020 HOH HOH . Z 4 HOH C 21 2021 2021 HOH HOH . AA 4 HOH D 1 2001 2001 HOH HOH . AA 4 HOH D 2 2002 2002 HOH HOH . AA 4 HOH D 3 2003 2003 HOH HOH . AA 4 HOH D 4 2004 2004 HOH HOH . AA 4 HOH D 5 2005 2005 HOH HOH . AA 4 HOH D 6 2006 2006 HOH HOH . AA 4 HOH D 7 2007 2007 HOH HOH . AA 4 HOH D 8 2008 2008 HOH HOH . AA 4 HOH D 9 2009 2009 HOH HOH . AA 4 HOH D 10 2010 2010 HOH HOH . AA 4 HOH D 11 2011 2011 HOH HOH . AA 4 HOH D 12 2012 2012 HOH HOH . AA 4 HOH D 13 2013 2013 HOH HOH . AA 4 HOH D 14 2014 2014 HOH HOH . AA 4 HOH D 15 2015 2015 HOH HOH . AA 4 HOH D 16 2016 2016 HOH HOH . AA 4 HOH D 17 2017 2017 HOH HOH . AA 4 HOH D 18 2018 2018 HOH HOH . AA 4 HOH D 19 2019 2019 HOH HOH . AA 4 HOH D 20 2020 2020 HOH HOH . AA 4 HOH D 21 2021 2021 HOH HOH . AA 4 HOH D 22 2022 2022 HOH HOH . AA 4 HOH D 23 2023 2023 HOH HOH . AA 4 HOH D 24 2024 2024 HOH HOH . AA 4 HOH D 25 2025 2025 HOH HOH . BA 4 HOH E 1 2001 2001 HOH HOH . BA 4 HOH E 2 2002 2002 HOH HOH . BA 4 HOH E 3 2003 2003 HOH HOH . BA 4 HOH E 4 2004 2004 HOH HOH . BA 4 HOH E 5 2005 2005 HOH HOH . BA 4 HOH E 6 2006 2006 HOH HOH . BA 4 HOH E 7 2007 2007 HOH HOH . CA 4 HOH F 1 2001 2001 HOH HOH . CA 4 HOH F 2 2002 2002 HOH HOH . CA 4 HOH F 3 2003 2003 HOH HOH . CA 4 HOH F 4 2004 2004 HOH HOH . CA 4 HOH F 5 2005 2005 HOH HOH . CA 4 HOH F 6 2006 2006 HOH HOH . CA 4 HOH F 7 2007 2007 HOH HOH . CA 4 HOH F 8 2008 2008 HOH HOH . DA 4 HOH G 1 2001 2001 HOH HOH . DA 4 HOH G 2 2002 2002 HOH HOH . DA 4 HOH G 3 2003 2003 HOH HOH . EA 4 HOH H 1 2001 2001 HOH HOH . EA 4 HOH H 2 2002 2002 HOH HOH . EA 4 HOH H 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 2 75.046 142.197 2.577 1 57.67 ? C1 GOL 1076 B 1 HETATM 2 O O1 GOL . . . K 2 75.441 142.154 3.929 1 65.5 ? O1 GOL 1076 B 1 HETATM 3 C C2 GOL . . . K 2 73.55 141.928 2.478 1 49.4 ? C2 GOL 1076 B 1 HETATM 4 O O2 GOL . . . K 2 73.264 140.632 2.959 1 54.62 ? O2 GOL 1076 B 1 HETATM 5 C C3 GOL . . . K 2 73.099 142.052 1.029 1 37.4 ? C3 GOL 1076 B 1 HETATM 6 O O3 GOL . . . K 2 71.973 141.225 0.81 1 46.01 ? O3 GOL 1076 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #