data_5AFU
#
_model_server_result.job_id            NKJ1Q8ytsDEG0rBIdBR2Lw 
_model_server_result.datetime_utc      '2024-10-14 05:26:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5afu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":401}' 
#
_entry.id    5AFU 
#
_exptl.entry_id    5AFU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          24 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AFU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    33-meric 
_pdbx_struct_assembly.oligomeric_count      33 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      24 
_struct_asym.id                             OA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     5AFU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
HA 23 ADP A 1 800 800 ADP ADP . 
IA 23 ADP B 1 800 800 ADP ADP . 
JA 23 ADP C 1 800 800 ADP ADP . 
KA 23 ADP D 1 800 800 ADP ADP . 
LA 23 ADP E 1 800 800 ADP ADP . 
MA 23 ADP F 1 800 800 ADP ADP . 
NA 23 ADP G 1 800 800 ADP ADP . 
OA 24 ATP H 1 401 401 ATP ATP . 
PA 23 ADP I 1 800 800 ADP ADP . 
QA 23 ADP J 1 800 800 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . OA 24 68.181 -6.294 -44.052 1 65.86 ? PG ATP 401 H 1 
HETATM 2 O O1G ATP . . . OA 24 66.909 -7.053 -44.341 1 64.25 ? O1G ATP 401 H 1 
HETATM 3 O O2G ATP . . . OA 24 69.119 -7.001 -43.103 1 65.25 -1 O2G ATP 401 H 1 
HETATM 4 O O3G ATP . . . OA 24 67.98 -4.826 -43.755 1 62.73 ? O3G ATP 401 H 1 
HETATM 5 P PB ATP . . . OA 24 70.525 -5.991 -45.601 1 60.98 ? PB ATP 401 H 1 
HETATM 6 O O1B ATP . . . OA 24 70.838 -5.65 -47.039 1 59.2 -1 O1B ATP 401 H 1 
HETATM 7 O O2B ATP . . . OA 24 70.916 -5.02 -44.514 1 61.06 ? O2B ATP 401 H 1 
HETATM 8 O O3B ATP . . . OA 24 68.949 -6.301 -45.47 1 63.74 ? O3B ATP 401 H 1 
HETATM 9 P PA ATP . . . OA 24 72.599 -7.565 -44.526 1 56.33 ? PA ATP 401 H 1 
HETATM 10 O O1A ATP . . . OA 24 73.198 -8.905 -44.882 1 56.64 -1 O1A ATP 401 H 1 
HETATM 11 O O2A ATP . . . OA 24 72.382 -7.198 -43.078 1 56.23 ? O2A ATP 401 H 1 
HETATM 12 O O3A ATP . . . OA 24 71.184 -7.427 -45.284 1 58.02 ? O3A ATP 401 H 1 
HETATM 13 O O5' ATP . . . OA 24 73.497 -6.414 -45.207 1 55.63 ? O5' ATP 401 H 1 
HETATM 14 C C5' ATP . . . OA 24 74.919 -6.392 -45.075 1 55.65 ? C5' ATP 401 H 1 
HETATM 15 C C4' ATP . . . OA 24 75.371 -5.024 -44.556 1 56.21 ? C4' ATP 401 H 1 
HETATM 16 O O4' ATP . . . OA 24 75.883 -5.146 -43.223 1 56.59 ? O4' ATP 401 H 1 
HETATM 17 C C3' ATP . . . OA 24 76.463 -4.362 -45.397 1 57.31 ? C3' ATP 401 H 1 
HETATM 18 O O3' ATP . . . OA 24 75.931 -3.273 -46.163 1 57.64 ? O3' ATP 401 H 1 
HETATM 19 C C2' ATP . . . OA 24 77.526 -3.907 -44.408 1 57.21 ? C2' ATP 401 H 1 
HETATM 20 O O2' ATP . . . OA 24 77.474 -2.494 -44.167 1 56.8 ? O2' ATP 401 H 1 
HETATM 21 C C1' ATP . . . OA 24 77.23 -4.675 -43.127 1 56.63 ? C1' ATP 401 H 1 
HETATM 22 N N9 ATP . . . OA 24 78.149 -5.834 -42.979 1 55.02 ? N9 ATP 401 H 1 
HETATM 23 C C8 ATP . . . OA 24 78.219 -6.887 -43.818 1 54.43 ? C8 ATP 401 H 1 
HETATM 24 N N7 ATP . . . OA 24 79.157 -7.777 -43.404 1 54.49 ? N7 ATP 401 H 1 
HETATM 25 C C5 ATP . . . OA 24 79.706 -7.298 -42.275 1 54.77 ? C5 ATP 401 H 1 
HETATM 26 C C6 ATP . . . OA 24 80.759 -7.739 -41.323 1 56.36 ? C6 ATP 401 H 1 
HETATM 27 N N6 ATP . . . OA 24 81.421 -8.907 -41.506 1 57.21 ? N6 ATP 401 H 1 
HETATM 28 N N1 ATP . . . OA 24 81.031 -6.935 -40.264 1 56.67 ? N1 ATP 401 H 1 
HETATM 29 C C2 ATP . . . OA 24 80.38 -5.766 -40.063 1 55.94 ? C2 ATP 401 H 1 
HETATM 30 N N3 ATP . . . OA 24 79.415 -5.308 -40.893 1 54.84 ? N3 ATP 401 H 1 
HETATM 31 C C4 ATP . . . OA 24 79.038 -6.012 -41.996 1 54.51 ? C4 ATP 401 H 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    90 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#