data_5AG4 # _model_server_result.job_id magIa01tTh0ZfR47kRgYGQ _model_server_result.datetime_utc '2024-10-27 14:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ag4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1423}' # _entry.id 5AG4 # _exptl.entry_id 5AG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.768 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-3-(3-chlorophenyl)-2-(pyridin-2-yl)-1,3-thiazolidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.48 _cell.angle_gamma 90 _cell.entry_id 5AG4 _cell.length_a 48.71 _cell.length_b 90.884 _cell.length_c 53.867 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H11 Cl N2 O S' _chem_comp.formula_weight 290.768 _chem_comp.id N8N _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-3-(3-chlorophenyl)-2-(pyridin-2-yl)-1,3-thiazolidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAO N8N sing 364 n y CAJ CAP N8N doub 365 n y CAO CL N8N sing 366 n n CAO CAG N8N doub 367 n y CAG CAE N8N sing 368 n y CAE CAH N8N doub 369 n y CAH CAP N8N sing 370 n y CAP NAS N8N sing 371 n n NAS CAN N8N sing 372 n n NAS CAR N8N sing 373 n n CAN OAA N8N doub 374 n n CAN CAK N8N sing 375 n n CAK SAM N8N sing 376 n n SAM CAR N8N sing 377 n n CAR CAQ N8N sing 378 n n CAQ CAI N8N sing 379 n y CAQ NAL N8N doub 380 n y CAI CAD N8N doub 381 n y CAD CAC N8N sing 382 n y CAC CAF N8N doub 383 n y CAF NAL N8N sing 384 n y CAJ HAJ N8N sing 385 n n CAG HAG N8N sing 386 n n CAE HAE N8N sing 387 n n CAH HAH N8N sing 388 n n CAR HAR N8N sing 389 n n CAK HAK1 N8N sing 390 n n CAK HAK2 N8N sing 391 n n CAI HAI N8N sing 392 n n CAD HAD N8N sing 393 n n CAC HAC N8N sing 394 n n CAF HAF N8N sing 395 n n # _atom_sites.entry_id 5AG4 _atom_sites.fract_transf_matrix[1][1] 0.02053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008918 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYA A 1 1422 1422 MYA MYA . C 3 N8N A 1 1423 1423 N8N N8N . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ N8N . A . C 3 25.754 5.8 14.543 0.5 35.14 ? CAJ N8N 1423 A 1 HETATM 2 C CAJ N8N . B . C 3 27.678 7.355 14.177 0.5 39.17 ? CAJ N8N 1423 A 1 HETATM 3 C CAO N8N . A . C 3 25.795 5.749 13.146 0.5 34.34 ? CAO N8N 1423 A 1 HETATM 4 C CAO N8N . B . C 3 27.513 7.237 12.791 0.5 39.71 ? CAO N8N 1423 A 1 HETATM 5 CL CL N8N . A . C 3 24.623 4.795 12.298 0.5 36.06 ? CL N8N 1423 A 1 HETATM 6 CL CL N8N . B . C 3 28.731 7.841 11.708 0.5 41.75 ? CL N8N 1423 A 1 HETATM 7 C CAG N8N . A . C 3 26.78 6.447 12.446 0.5 35.64 ? CAG N8N 1423 A 1 HETATM 8 C CAG N8N . B . C 3 26.369 6.606 12.288 0.5 37.91 ? CAG N8N 1423 A 1 HETATM 9 C CAE N8N . A . C 3 27.717 7.216 13.15 0.5 37.27 ? CAE N8N 1423 A 1 HETATM 10 C CAE N8N . B . C 3 25.387 6.118 13.157 0.5 34.37 ? CAE N8N 1423 A 1 HETATM 11 C CAH N8N . A . C 3 27.678 7.25 14.549 0.5 36.05 ? CAH N8N 1423 A 1 HETATM 12 C CAH N8N . B . C 3 25.553 6.246 14.542 0.5 36.82 ? CAH N8N 1423 A 1 HETATM 13 C CAP N8N . A . C 3 26.665 6.577 15.251 0.5 37.47 ? CAP N8N 1423 A 1 HETATM 14 C CAP N8N . B . C 3 26.69 6.878 15.054 0.5 39.07 ? CAP N8N 1423 A 1 HETATM 15 N NAS N8N . A . C 3 26.657 6.575 16.595 0.5 38.71 ? NAS N8N 1423 A 1 HETATM 16 N NAS N8N . B . C 3 26.869 6.992 16.378 0.5 40.93 ? NAS N8N 1423 A 1 HETATM 17 C CAN N8N . A . C 3 25.59 6.718 17.416 0.5 40.93 ? CAN N8N 1423 A 1 HETATM 18 C CAN N8N . B . C 3 26.001 7.636 17.167 0.5 41.37 ? CAN N8N 1423 A 1 HETATM 19 O OAA N8N . A . C 3 24.456 7.016 17.035 0.5 43.01 ? OAA N8N 1423 A 1 HETATM 20 O OAA N8N . B . C 3 24.958 8.119 16.737 0.5 45.3 ? OAA N8N 1423 A 1 HETATM 21 C CAK N8N . A . C 3 25.878 6.547 18.932 0.5 41.19 ? CAK N8N 1423 A 1 HETATM 22 C CAK N8N . B . C 3 26.327 7.692 18.675 0.5 43.11 ? CAK N8N 1423 A 1 HETATM 23 S SAM N8N . A . C 3 27.705 6.477 19.016 0.5 39.97 ? SAM N8N 1423 A 1 HETATM 24 S SAM N8N . B . C 3 27.887 6.772 18.822 0.5 41.51 ? SAM N8N 1423 A 1 HETATM 25 C CAR N8N . A . C 3 27.937 6.15 17.231 0.5 37.42 ? CAR N8N 1423 A 1 HETATM 26 C CAR N8N . B . C 3 28.102 6.424 17.035 0.5 40.43 ? CAR N8N 1423 A 1 HETATM 27 C CAQ N8N . A . C 3 28.162 4.671 16.881 0.5 36.4 ? CAQ N8N 1423 A 1 HETATM 28 C CAQ N8N . B . C 3 28.224 4.922 16.754 0.5 39.05 ? CAQ N8N 1423 A 1 HETATM 29 C CAI N8N . A . C 3 29.123 4.366 15.931 0.5 36.33 ? CAI N8N 1423 A 1 HETATM 30 C CAI N8N . B . C 3 29.192 4.492 15.859 0.5 39.89 ? CAI N8N 1423 A 1 HETATM 31 C CAD N8N . A . C 3 29.347 3.045 15.549 0.5 37.09 ? CAD N8N 1423 A 1 HETATM 32 C CAD N8N . B . C 3 29.318 3.14 15.556 0.5 40.37 ? CAD N8N 1423 A 1 HETATM 33 C CAC N8N . A . C 3 28.584 2.064 16.181 0.5 38.21 ? CAC N8N 1423 A 1 HETATM 34 C CAC N8N . B . C 3 28.458 2.256 16.205 0.5 41.39 ? CAC N8N 1423 A 1 HETATM 35 C CAF N8N . A . C 3 27.635 2.419 17.136 0.5 36.22 ? CAF N8N 1423 A 1 HETATM 36 C CAF N8N . B . C 3 27.514 2.735 17.108 0.5 39.8 ? CAF N8N 1423 A 1 HETATM 37 N NAL N8N . A . C 3 27.432 3.683 17.461 0.5 36.1 ? NAL N8N 1423 A 1 HETATM 38 N NAL N8N . B . C 3 27.406 4.027 17.356 0.5 40.61 ? NAL N8N 1423 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #