data_5AGE # _model_server_result.job_id RnNNbNorIpsbqjpS0-Rx5g _model_server_result.datetime_utc '2024-10-27 14:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5age # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1422}' # _entry.id 5AGE # _exptl.entry_id 5AGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.511 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(5-methyl-1,2-oxazol-3-yl)methyl]-7-[4-(1-methylpiperidin-4-yl)butyl]-2H-1,4-benzoxazin-3(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.78 _cell.angle_gamma 90 _cell.entry_id 5AGE _cell.length_a 48.024 _cell.length_b 90.165 _cell.length_c 52.966 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H31 N3 O3' _chem_comp.formula_weight 397.511 _chem_comp.id M9M _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(5-methyl-1,2-oxazol-3-yl)methyl]-7-[4-(1-methylpiperidin-4-yl)butyl]-2H-1,4-benzoxazin-3(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAN M9M sing 218 n n CAL CBA M9M sing 219 n n CAN NBB M9M sing 220 n n NBB CAB M9M sing 221 n n NBB CAO M9M sing 222 n n CAO CAM M9M sing 223 n n CAM CBA M9M sing 224 n n CBA CAK M9M sing 225 n n CAK CAI M9M sing 226 n n CAI CAH M9M sing 227 n n CAH CAJ M9M sing 228 n n CAJ CAW M9M sing 229 n n CAW CAG M9M sing 230 n y CAW CAD M9M doub 231 n y CAG CAY M9M doub 232 n y CAD CAE M9M sing 233 n y CAE CAZ M9M doub 234 n y CAZ CAY M9M sing 235 n y CAZ NBC M9M sing 236 n n CAY OAS M9M sing 237 n n OAS CAP M9M sing 238 n n CAP CAU M9M sing 239 n n CAU OAC M9M doub 240 n n CAU NBC M9M sing 241 n n NBC CAQ M9M sing 242 n n CAQ CAX M9M sing 243 n n CAX CAF M9M sing 244 n y CAX NAR M9M doub 245 n y CAF CAV M9M doub 246 n y CAV CAA M9M sing 247 n n CAV OAT M9M sing 248 n y OAT NAR M9M sing 249 n y CAL HAL1 M9M sing 250 n n CAL HAL2 M9M sing 251 n n CAN HAN1 M9M sing 252 n n CAN HAN2 M9M sing 253 n n CBA HBA M9M sing 254 n n CAB HAB1 M9M sing 255 n n CAB HAB2 M9M sing 256 n n CAB HAB3 M9M sing 257 n n CAO HAO1 M9M sing 258 n n CAO HAO2 M9M sing 259 n n CAM HAM1 M9M sing 260 n n CAM HAM2 M9M sing 261 n n CAK HAK1 M9M sing 262 n n CAK HAK2 M9M sing 263 n n CAI HAI1 M9M sing 264 n n CAI HAI2 M9M sing 265 n n CAH HAH1 M9M sing 266 n n CAH HAH2 M9M sing 267 n n CAJ HAJ1 M9M sing 268 n n CAJ HAJ2 M9M sing 269 n n CAG HAG M9M sing 270 n n CAD HAD M9M sing 271 n n CAE HAE M9M sing 272 n n CAP HAP1 M9M sing 273 n n CAP HAP2 M9M sing 274 n n CAQ HAQ1 M9M sing 275 n n CAQ HAQ2 M9M sing 276 n n CAF HAF M9M sing 277 n n CAA HAA1 M9M sing 278 n n CAA HAA2 M9M sing 279 n n CAA HAA3 M9M sing 280 n n # _atom_sites.entry_id 5AGE _atom_sites.fract_transf_matrix[1][1] 0.020823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009175 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M9M A 1 1422 1422 M9M M9M . C 3 MYA A 1 1423 1423 MYA MYA . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . D 4 HOH A 160 2160 2160 HOH HOH . D 4 HOH A 161 2161 2161 HOH HOH . D 4 HOH A 162 2162 2162 HOH HOH . D 4 HOH A 163 2163 2163 HOH HOH . D 4 HOH A 164 2164 2164 HOH HOH . D 4 HOH A 165 2165 2165 HOH HOH . D 4 HOH A 166 2166 2166 HOH HOH . D 4 HOH A 167 2167 2167 HOH HOH . D 4 HOH A 168 2168 2168 HOH HOH . D 4 HOH A 169 2169 2169 HOH HOH . D 4 HOH A 170 2170 2170 HOH HOH . D 4 HOH A 171 2171 2171 HOH HOH . D 4 HOH A 172 2172 2172 HOH HOH . D 4 HOH A 173 2173 2173 HOH HOH . D 4 HOH A 174 2174 2174 HOH HOH . D 4 HOH A 175 2175 2175 HOH HOH . D 4 HOH A 176 2176 2176 HOH HOH . D 4 HOH A 177 2177 2177 HOH HOH . D 4 HOH A 178 2178 2178 HOH HOH . D 4 HOH A 179 2179 2179 HOH HOH . D 4 HOH A 180 2180 2180 HOH HOH . D 4 HOH A 181 2181 2181 HOH HOH . D 4 HOH A 182 2182 2182 HOH HOH . D 4 HOH A 183 2183 2183 HOH HOH . D 4 HOH A 184 2184 2184 HOH HOH . D 4 HOH A 185 2185 2185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL M9M . . . B 2 24.617 -1.25 8.192 1 33.87 ? CAL M9M 1422 A 1 HETATM 2 C CAN M9M . . . B 2 23.613 -2.226 8.783 1 35.85 ? CAN M9M 1422 A 1 HETATM 3 N NBB M9M . . . B 2 22.307 -1.55 9.03 1 33.79 ? NBB M9M 1422 A 1 HETATM 4 C CAB M9M . . . B 2 21.427 -1.586 7.863 1 32.61 ? CAB M9M 1422 A 1 HETATM 5 C CAO M9M . . . B 2 22.369 -0.262 9.816 1 34.69 ? CAO M9M 1422 A 1 HETATM 6 C CAM M9M . . . B 2 23.658 0.584 9.585 1 30.19 ? CAM M9M 1422 A 1 HETATM 7 C CBA M9M . . . B 2 24.885 -0.335 9.342 1 33.62 ? CBA M9M 1422 A 1 HETATM 8 C CAK M9M . . . B 2 26.137 0.387 9.052 1 29.93 ? CAK M9M 1422 A 1 HETATM 9 C CAI M9M . . . B 2 26.251 1.763 9.769 1 30.36 ? CAI M9M 1422 A 1 HETATM 10 C CAH M9M . . . B 2 27.718 2.227 9.744 1 32.96 ? CAH M9M 1422 A 1 HETATM 11 C CAJ M9M . . . B 2 27.778 3.709 10.197 1 33.14 ? CAJ M9M 1422 A 1 HETATM 12 C CAW M9M . . . B 2 27.46 3.793 11.723 1 32.65 ? CAW M9M 1422 A 1 HETATM 13 C CAG M9M . . . B 2 28.25 3.076 12.616 1 32.04 ? CAG M9M 1422 A 1 HETATM 14 C CAD M9M . . . B 2 26.395 4.584 12.199 1 30.69 ? CAD M9M 1422 A 1 HETATM 15 C CAE M9M . . . B 2 26.127 4.655 13.559 1 29.22 ? CAE M9M 1422 A 1 HETATM 16 C CAZ M9M . . . B 2 26.937 3.928 14.471 1 32.43 ? CAZ M9M 1422 A 1 HETATM 17 C CAY M9M . . . B 2 27.992 3.143 13.991 1 31.43 ? CAY M9M 1422 A 1 HETATM 18 O OAS M9M . . . B 2 28.738 2.381 14.887 1 33.91 ? OAS M9M 1422 A 1 HETATM 19 C CAP M9M . . . B 2 27.944 1.848 15.987 1 27.01 ? CAP M9M 1422 A 1 HETATM 20 C CAU M9M . . . B 2 27.193 2.848 16.646 1 28.87 ? CAU M9M 1422 A 1 HETATM 21 O OAC M9M . . . B 2 27.025 2.84 17.868 1 26.7 ? OAC M9M 1422 A 1 HETATM 22 N NBC M9M . . . B 2 26.702 3.919 15.882 1 28.17 ? NBC M9M 1422 A 1 HETATM 23 C CAQ M9M . . . B 2 25.961 5.022 16.531 1 34.69 ? CAQ M9M 1422 A 1 HETATM 24 C CAX M9M . . . B 2 26.791 6.247 16.257 1 38.3 ? CAX M9M 1422 A 1 HETATM 25 C CAF M9M . . . B 2 28.106 6.322 16.539 1 41.99 ? CAF M9M 1422 A 1 HETATM 26 C CAV M9M . . . B 2 28.57 7.523 16.179 1 45.42 ? CAV M9M 1422 A 1 HETATM 27 C CAA M9M . . . B 2 30.037 8.01 16.338 1 46.23 ? CAA M9M 1422 A 1 HETATM 28 O OAT M9M . . . B 2 27.537 8.234 15.659 1 44.74 ? OAT M9M 1422 A 1 HETATM 29 N NAR M9M . . . B 2 26.378 7.382 15.699 1 41.44 ? NAR M9M 1422 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #