data_5AGJ # _model_server_result.job_id ju-L61BAqQ9izdt8G0nB4g _model_server_result.datetime_utc '2024-12-02 22:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5agj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1817}' # _entry.id 5AGJ # _exptl.entry_id 5AGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYL DIHYDROGEN PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AGJ _cell.length_a 42.95 _cell.length_b 59.26 _cell.length_c 97.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 B F N5 O8 P -1' _chem_comp.formula_weight 480.129 _chem_comp.id ANZ _chem_comp.mon_nstd_flag . _chem_comp.name "[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CB CG ANZ sing 13 n n CG CD1 ANZ sing 14 n y CG CD2 ANZ doub 15 n y CD1 CE1 ANZ doub 16 n y CD2 CE2 ANZ sing 17 n y CE1 CZ ANZ sing 18 n y CE2 CZ ANZ doub 19 n y P O1P ANZ sing 20 n n P O2P ANZ sing 21 n n P O3P ANZ doub 22 n n N9 C8 ANZ sing 23 n y C8 N7 ANZ doub 24 n y N7 C5 ANZ sing 25 n y C5 C6 ANZ doub 26 n y C6 N6 ANZ sing 27 n n C6 N1 ANZ sing 28 n y N1 C2 ANZ doub 29 n y C2 N3 ANZ sing 30 n y N9 C4 ANZ sing 31 n y C5 C4 ANZ sing 32 n y N3 C4 ANZ doub 33 n y P O5' ANZ sing 34 n n O5' C5' ANZ sing 35 n n C5' C4' ANZ sing 36 n n C4' O4' ANZ sing 37 n n C4' C3' ANZ sing 38 n n C3' O3' ANZ sing 39 n n C3' C2' ANZ sing 40 n n C2' O2' ANZ sing 41 n n N9 C1' ANZ sing 42 n n O4' C1' ANZ sing 43 n n C2' C1' ANZ sing 44 n n CE1 F ANZ sing 45 n n CB O1 ANZ sing 46 n n CD2 B ANZ sing 47 n n O3' B ANZ sing 48 n n O2' B ANZ sing 49 n n O1 B ANZ sing 50 n n CB HBC1 ANZ sing 51 n n CB HBC2 ANZ sing 52 n n CD1 HD1 ANZ sing 53 n n CE2 HE2 ANZ sing 54 n n CZ HZ ANZ sing 55 n n O1P H1P ANZ sing 56 n n O2P H2P ANZ sing 57 n n C8 H8 ANZ sing 58 n n C1' H1' ANZ sing 59 n n N6 H6N1 ANZ sing 60 n n N6 H6N2 ANZ sing 61 n n C2 H2 ANZ sing 62 n n C5' "H5'1" ANZ sing 63 n n C5' "H5'2" ANZ sing 64 n n C4' H4' ANZ sing 65 n n C3' H3' ANZ sing 66 n n C2' H2' ANZ sing 67 n n # _atom_sites.entry_id 5AGJ _atom_sites.fract_transf_matrix[1][1] 0.023283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANZ A 1 1817 1817 ANZ ANZ . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . C 3 HOH A 140 2140 2140 HOH HOH . C 3 HOH A 141 2141 2141 HOH HOH . C 3 HOH A 142 2142 2142 HOH HOH . C 3 HOH A 143 2143 2143 HOH HOH . C 3 HOH A 144 2144 2144 HOH HOH . C 3 HOH A 145 2145 2145 HOH HOH . C 3 HOH A 146 2146 2146 HOH HOH . C 3 HOH A 147 2147 2147 HOH HOH . C 3 HOH A 148 2148 2148 HOH HOH . C 3 HOH A 149 2149 2149 HOH HOH . C 3 HOH A 150 2150 2150 HOH HOH . C 3 HOH A 151 2151 2151 HOH HOH . C 3 HOH A 152 2152 2152 HOH HOH . C 3 HOH A 153 2153 2153 HOH HOH . C 3 HOH A 154 2154 2154 HOH HOH . C 3 HOH A 155 2155 2155 HOH HOH . C 3 HOH A 156 2156 2156 HOH HOH . C 3 HOH A 157 2157 2157 HOH HOH . C 3 HOH A 158 2158 2158 HOH HOH . C 3 HOH A 159 2159 2159 HOH HOH . C 3 HOH A 160 2160 2160 HOH HOH . C 3 HOH A 161 2161 2161 HOH HOH . C 3 HOH A 162 2162 2162 HOH HOH . C 3 HOH A 163 2163 2163 HOH HOH . C 3 HOH A 164 2164 2164 HOH HOH . C 3 HOH A 165 2165 2165 HOH HOH . C 3 HOH A 166 2166 2166 HOH HOH . C 3 HOH A 167 2167 2167 HOH HOH . C 3 HOH A 168 2168 2168 HOH HOH . C 3 HOH A 169 2169 2169 HOH HOH . C 3 HOH A 170 2170 2170 HOH HOH . C 3 HOH A 171 2171 2171 HOH HOH . C 3 HOH A 172 2172 2172 HOH HOH . C 3 HOH A 173 2173 2173 HOH HOH . C 3 HOH A 174 2174 2174 HOH HOH . C 3 HOH A 175 2175 2175 HOH HOH . C 3 HOH A 176 2176 2176 HOH HOH . C 3 HOH A 177 2177 2177 HOH HOH . C 3 HOH A 178 2178 2178 HOH HOH . C 3 HOH A 179 2179 2179 HOH HOH . C 3 HOH A 180 2180 2180 HOH HOH . C 3 HOH A 181 2181 2181 HOH HOH . C 3 HOH A 182 2182 2182 HOH HOH . C 3 HOH A 183 2183 2183 HOH HOH . C 3 HOH A 184 2184 2184 HOH HOH . C 3 HOH A 185 2185 2185 HOH HOH . C 3 HOH A 186 2186 2186 HOH HOH . C 3 HOH A 187 2187 2187 HOH HOH . C 3 HOH A 188 2188 2188 HOH HOH . C 3 HOH A 189 2189 2189 HOH HOH . C 3 HOH A 190 2190 2190 HOH HOH . C 3 HOH A 191 2191 2191 HOH HOH . C 3 HOH A 192 2192 2192 HOH HOH . C 3 HOH A 193 2193 2193 HOH HOH . C 3 HOH A 194 2194 2194 HOH HOH . C 3 HOH A 195 2195 2195 HOH HOH . C 3 HOH A 196 2196 2196 HOH HOH . C 3 HOH A 197 2197 2197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB ANZ . . . B 2 26.501 58.879 9.972 1 12.18 ? CB ANZ 1817 A 1 HETATM 2 C CG ANZ . . . B 2 25.527 59.995 9.671 1 12.47 ? CG ANZ 1817 A 1 HETATM 3 C CD1 ANZ . . . B 2 25.139 60.518 8.443 1 12.47 ? CD1 ANZ 1817 A 1 HETATM 4 C CD2 ANZ . . . B 2 24.974 60.504 10.916 1 12.36 ? CD2 ANZ 1817 A 1 HETATM 5 C CE1 ANZ . . . B 2 24.205 61.553 8.415 1 13.25 ? CE1 ANZ 1817 A 1 HETATM 6 C CE2 ANZ . . . B 2 24.03 61.546 10.872 1 12.93 ? CE2 ANZ 1817 A 1 HETATM 7 C CZ ANZ . . . B 2 23.655 62.073 9.613 1 12.74 ? CZ ANZ 1817 A 1 HETATM 8 P P ANZ . . . B 2 21.391 61.754 17.311 1 19.27 ? P ANZ 1817 A 1 HETATM 9 O O1P ANZ . . . B 2 21.558 60.568 18.234 1 18.81 ? O1P ANZ 1817 A 1 HETATM 10 O O2P ANZ . . . B 2 20.203 61.66 16.393 1 18.2 ? O2P ANZ 1817 A 1 HETATM 11 O O3P ANZ . . . B 2 21.645 63.099 17.972 1 19.76 ? O3P ANZ 1817 A 1 HETATM 12 N N9 ANZ . . . B 2 27.15 60.576 16.551 1 13.89 ? N9 ANZ 1817 A 1 HETATM 13 C C8 ANZ . . . B 2 27.152 59.299 16.988 1 13.95 ? C8 ANZ 1817 A 1 HETATM 14 N N7 ANZ . . . B 2 27.829 59.205 18.153 1 14.21 ? N7 ANZ 1817 A 1 HETATM 15 C C5 ANZ . . . B 2 28.259 60.452 18.461 1 13.79 ? C5 ANZ 1817 A 1 HETATM 16 C C6 ANZ . . . B 2 29.027 61.043 19.563 1 13.85 ? C6 ANZ 1817 A 1 HETATM 17 N N6 ANZ . . . B 2 29.478 60.251 20.569 1 13.77 ? N6 ANZ 1817 A 1 HETATM 18 N N1 ANZ . . . B 2 29.264 62.37 19.534 1 13.69 ? N1 ANZ 1817 A 1 HETATM 19 C C2 ANZ . . . B 2 28.812 63.143 18.528 1 14.15 ? C2 ANZ 1817 A 1 HETATM 20 N N3 ANZ . . . B 2 28.094 62.668 17.497 1 13.62 ? N3 ANZ 1817 A 1 HETATM 21 C C4 ANZ . . . B 2 27.799 61.347 17.421 1 13.69 ? C4 ANZ 1817 A 1 HETATM 22 O O5' ANZ . . . B 2 22.714 61.636 16.383 1 18.77 ? O5' ANZ 1817 A 1 HETATM 23 C C5' ANZ . . . B 2 23.085 60.383 15.781 1 16.4 ? C5' ANZ 1817 A 1 HETATM 24 C C4' ANZ . . . B 2 24.25 60.671 14.847 1 14.85 ? C4' ANZ 1817 A 1 HETATM 25 O O4' ANZ . . . B 2 25.183 61.468 15.587 1 14.53 ? O4' ANZ 1817 A 1 HETATM 26 C C3' ANZ . . . B 2 24.992 59.441 14.343 1 13.9 ? C3' ANZ 1817 A 1 HETATM 27 O O3' ANZ . . . B 2 24.662 59.085 13.007 1 13.06 ? O3' ANZ 1817 A 1 HETATM 28 C C2' ANZ . . . B 2 26.407 59.944 14.28 1 13.76 ? C2' ANZ 1817 A 1 HETATM 29 O O2' ANZ . . . B 2 26.522 60.388 12.944 1 13.2 ? O2' ANZ 1817 A 1 HETATM 30 C C1' ANZ . . . B 2 26.511 61.07 15.307 1 14.03 ? C1' ANZ 1817 A 1 HETATM 31 F F ANZ . . . B 2 23.842 62.04 7.211 1 13.48 ? F ANZ 1817 A 1 HETATM 32 O O1 ANZ . . . B 2 26.354 58.718 11.401 1 12.17 ? O1 ANZ 1817 A 1 HETATM 33 B B ANZ . . . B 2 25.567 59.741 12.122 1 12.85 ? B ANZ 1817 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #