data_5AHF # _model_server_result.job_id 5dZixy2pcEmH9g0WVRJsvg _model_server_result.datetime_utc '2024-11-25 11:48:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ahf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1245}' # _entry.id 5AHF # _exptl.entry_id 5AHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AHF _cell.length_a 86.698 _cell.length_b 86.698 _cell.length_c 121.861 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H25 N5 O15 P2' _chem_comp.formula_weight 577.331 _chem_comp.id GUO _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[(E)-[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]amino]methylideneamino]imidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P1 GUO doub 142 n n O3P P1 GUO sing 143 n n P1 O5P GUO sing 144 n n P1 O4P GUO sing 145 n n O5P C6 GUO sing 146 n n C6 C9 GUO sing 147 n n C6 H6 GUO sing 148 n n C6 H6A GUO sing 149 n n C12 C9 GUO sing 150 n n O11 C9 GUO sing 151 n n C9 H9 GUO sing 152 n n C20 O11 GUO sing 153 n n C16 C12 GUO sing 154 n n C12 O14 GUO sing 155 n n C12 H12 GUO sing 156 n n O14 HO14 GUO sing 157 n n O18 C16 GUO sing 158 n n C16 C20 GUO sing 159 n n C16 H16 GUO sing 160 n n O18 HO18 GUO sing 161 n n N22 C20 GUO sing 162 n n C20 H20 GUO sing 163 n n N22 C24 GUO sing 164 n n N22 HN22 GUO sing 165 n n C24 N26 GUO doub 166 n n C24 H24 GUO sing 167 n n N26 C27 GUO sing 168 n n C28 C27 GUO doub 169 n y C27 N37 GUO sing 170 n y C29 C28 GUO sing 171 n n C28 N34 GUO sing 172 n y N31 C29 GUO sing 173 n n C29 O30 GUO doub 174 n n N31 HN31 GUO sing 175 n n N31 HN3A GUO sing 176 n n N34 C35 GUO doub 177 n y C35 N37 GUO sing 178 n y C35 H35 GUO sing 179 n n N37 C38 GUO sing 180 n n O40 C38 GUO sing 181 n n C38 C41 GUO sing 182 n n C38 H38 GUO sing 183 n n O3P HO3P GUO sing 184 n n O40 C49 GUO sing 185 n n C45 C41 GUO sing 186 n n C41 O43 GUO sing 187 n n C41 H41 GUO sing 188 n n O43 HO43 GUO sing 189 n n C49 C45 GUO sing 190 n n C45 O47 GUO sing 191 n n C45 H45 GUO sing 192 n n O47 HO47 GUO sing 193 n n C51 C49 GUO sing 194 n n C49 H49 GUO sing 195 n n O4P HO4P GUO sing 196 n n C51 O54 GUO sing 197 n n C51 H51 GUO sing 198 n n C51 H51A GUO sing 199 n n P55 O54 GUO sing 200 n n O56 P55 GUO doub 201 n n O58 P55 GUO sing 202 n n P55 O57 GUO sing 203 n n O57 HO57 GUO sing 204 n n O58 HO58 GUO sing 205 n n # _atom_sites.entry_id 5AHF _atom_sites.fract_transf_matrix[1][1] 0.011534 _atom_sites.fract_transf_matrix[1][2] 0.006659 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GUO A 1 1245 1245 GUO GUO . C 3 GOL A 1 1246 1246 GOL GOL . D 3 GOL A 1 1247 1247 GOL GOL . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 GUO . . . B 2 9.686 34.548 0.337 1 59.59 ? P1 GUO 1245 A 1 HETATM 2 C C6 GUO . . . B 2 7.414 33.335 0.839 1 63.17 ? C6 GUO 1245 A 1 HETATM 3 C C9 GUO . . . B 2 6.804 31.935 0.935 1 63.31 ? C9 GUO 1245 A 1 HETATM 4 O O11 GUO . . . B 2 5.373 32.016 0.742 1 68.54 ? O11 GUO 1245 A 1 HETATM 5 C C12 GUO . . . B 2 7.31 31.076 -0.204 1 63.04 ? C12 GUO 1245 A 1 HETATM 6 O O14 GUO . . . B 2 7.032 29.695 0.061 1 64.89 ? O14 GUO 1245 A 1 HETATM 7 C C16 GUO . . . B 2 6.44 31.57 -1.321 1 68.29 ? C16 GUO 1245 A 1 HETATM 8 O O18 GUO . . . B 2 6.434 30.638 -2.41 1 62.36 ? O18 GUO 1245 A 1 HETATM 9 C C20 GUO . . . B 2 5.111 31.559 -0.598 1 55.83 ? C20 GUO 1245 A 1 HETATM 10 N N22 GUO . . . B 2 4.146 32.391 -1.243 1 63.68 ? N22 GUO 1245 A 1 HETATM 11 C C24 GUO . . . B 2 2.844 32.097 -1.19 1 58.22 ? C24 GUO 1245 A 1 HETATM 12 N N26 GUO . . . B 2 2.421 31.118 -0.488 1 55.38 ? N26 GUO 1245 A 1 HETATM 13 C C27 GUO . . . B 2 1.093 30.781 -0.467 1 59.66 ? C27 GUO 1245 A 1 HETATM 14 C C28 GUO . . . B 2 -0.021 31.51 -0.52 1 65.13 ? C28 GUO 1245 A 1 HETATM 15 C C29 GUO . . . B 2 -0.139 32.973 -0.6 1 61.79 ? C29 GUO 1245 A 1 HETATM 16 O O2P GUO . . . B 2 9.596 35.527 1.518 1 66.96 ? O2P GUO 1245 A 1 HETATM 17 O O30 GUO . . . B 2 0.804 33.708 -0.451 1 66.14 ? O30 GUO 1245 A 1 HETATM 18 N N31 GUO . . . B 2 -1.357 33.463 -0.797 1 54.75 ? N31 GUO 1245 A 1 HETATM 19 N N34 GUO . . . B 2 -1.115 30.663 -0.476 1 57.68 ? N34 GUO 1245 A 1 HETATM 20 C C35 GUO . . . B 2 -0.595 29.446 -0.403 1 60.14 ? C35 GUO 1245 A 1 HETATM 21 N N37 GUO . . . B 2 0.732 29.504 -0.401 1 59.79 ? N37 GUO 1245 A 1 HETATM 22 C C38 GUO . . . B 2 1.656 28.365 -0.323 1 47.04 ? C38 GUO 1245 A 1 HETATM 23 O O3P GUO . . . B 2 9.149 35.263 -0.914 1 49.48 ? O3P GUO 1245 A 1 HETATM 24 O O40 GUO . . . B 2 1.293 27.371 -1.283 1 50.04 ? O40 GUO 1245 A 1 HETATM 25 C C41 GUO . . . B 2 1.544 27.714 1.029 1 55.22 ? C41 GUO 1245 A 1 HETATM 26 O O43 GUO . . . B 2 2.419 28.358 1.965 1 53.88 ? O43 GUO 1245 A 1 HETATM 27 C C45 GUO . . . B 2 2.019 26.319 0.746 1 52.22 ? C45 GUO 1245 A 1 HETATM 28 O O47 GUO . . . B 2 3.44 26.256 0.901 1 49.88 ? O47 GUO 1245 A 1 HETATM 29 C C49 GUO . . . B 2 1.638 26.086 -0.715 1 44.52 ? C49 GUO 1245 A 1 HETATM 30 O O4P GUO . . . B 2 11.166 34.215 0.106 1 43.33 ? O4P GUO 1245 A 1 HETATM 31 C C51 GUO . . . B 2 0.424 25.156 -0.794 1 42.6 ? C51 GUO 1245 A 1 HETATM 32 O O54 GUO . . . B 2 -0.656 25.686 -0.02 1 43.18 ? O54 GUO 1245 A 1 HETATM 33 P P55 GUO . . . B 2 -2.16 25.204 -0.306 1 41.86 ? P55 GUO 1245 A 1 HETATM 34 O O56 GUO . . . B 2 -3.02 25.287 0.961 1 41.13 ? O56 GUO 1245 A 1 HETATM 35 O O57 GUO . . . B 2 -2.188 23.752 -0.801 1 38.78 ? O57 GUO 1245 A 1 HETATM 36 O O58 GUO . . . B 2 -2.821 26.08 -1.38 1 43.69 ? O58 GUO 1245 A 1 HETATM 37 O O5P GUO . . . B 2 8.824 33.231 0.644 1 64.68 ? O5P GUO 1245 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #